Jurnal AgroBiogen
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Pemuliaan Kentang Produk Rekayasa Genetik Tahan terhadap Penyakit Busuk Daun (Phytophthora infestans) dan Aman Pangan di Indonesia
Get PDFPemanfaatan tanaman kentang produk rekayasa genetik (PRG) dalam pemuliaan tanaman melalui persilangan dengan Atlantic dan Granola telah menghasilkan enam galur PRG hasil silangan yang terseleksi. Sebelum komersialisasi, kentang PRG harus dikaji keamanan pangan dan lingkungannya. Penulisan bertujuan memberikan informasi mengenai tanaman kentang PRG di Indonesia yang tahan terhadap penyakit busuk daun Phytophthora infestans dan telah dinyatakan aman untuk di-konsumsi oleh manusia. Analisis stabilitas menunjukkan bahwa gen RB stabil terintegrasi selama empat generasi klonal ber-urutan dalam genom tanaman kentang PRG dengan satu sisipan gen. Hasil studi komposisi dan nutrisi, glikoalkaloid total, dan anti nutrisi pada kentang PRG Katahdin SP951 dan galur-galur silangannya bersifat sepadan dengan Katahdin non-PRG. Studi toksisitas menunjukkan bahwa pemberian pakan suspensi umbi kentang dan suspensi tepung kentang Katahdin SP951 dan galur-galur silangan tidak berdampak terhadap mortalitas, bobot badan, dan tanda-tanda klinis pada mencit. Protein RB tidak memiliki homologi yang tinggi dengan protein toksin sehingga tidak bersifat toksik. Studi alergenisitas dengan Simulated Gastric Fluid dan Simulated Intestinal Fluid menunjukkan bahwa protein umbi kentang Katahdin SP951 dan galur-galur silangan terdegradasi kurang dari 5 menit inkubasi setelah perlakuan enzim pepsin atau tripsin. Protein RB tidak mempunyai sekuen asam amino yang homolog dengan protein alergen, sehingga tidak berpotensi menimbulkan alergi. Kentang Katahdin SP951 telah dinyatakan aman untuk dikonsumsi melalui Keputusan Kepala Badan Pengawas Obat dan Makanan tahun 2016. Tanaman kentang PRG tahan P. infestans yang dapat mengurangi 50% aplikasi fungisida, dan telah mendapat sertifikat aman pangan dan aman lingkungan diharapkan dapat menjadi pilihan untuk dimanfaatkan petani
Genetic Diversity Analysis Using Resistance Gene Analog-Based Markers to Support Morphological Characterization of Shallots
Get PDFShallot (Allium cepa var. aggregatum) is one of the most important vegetable crops grown in Indonesia. The limited knowledge available on the genetic diversity and the threat of plant disease have been major problems to maintain high shallot production in Indonesia. Development of molecular markers linked to disease resistance is required for molecular breeding activity in this crop. This study aimed to assess the genetic diversity at conserved domain of resistance gene analog (RGA) in a set of 36 Indonesian shallot genotypes to complement morphological characterization. Twelve morphological and fifteen molecular markers traits were investigated in an attempt to characterize and to discriminate the Indonesian shallots genotypes. Characterization at orphological level indicated that phenotypic variance was highest for total bulb weight (TWB, cv = 99.39%) and the least for the plant height (PH, cv = 28.16%). The correlation analysis between traits showed that TWB and number of bulb (NB), TWB and bulb weight per plant (WB), NB and WB, and WB and PH were positively correlated. Molecular analysis revealed a total of 1,512 alleles with an average of 1.946 alleles per locus. The Polymorphism Information Content (PIC) values ranged from 0.253 to 0.676 and six out of 15 RGA markers were highly informative with PIC values ≥0.50. Based on cluster analysis, the 36 Indonesian shallot genotypes were clearly discriminated into six major groups. These results revealed that the RGA-based markers could support the morphological characterization in evaluating the genetic diversity of shallots.
Kultur Antera untuk Percepatan Perakitan Varietas Padi di Indonesia
Get PDFRice is a staplefood crop in Indonesia, while the need is increasing due tohigh rice consumption as well as population increase. Theproblems can be solved through increase of national riceproduction. Productivity of lowland and upland should beincreased intensively and other potential dry area outsideJava and Bali Islands should be considered for extending thearea of production. Recently, high yielding variety such assemi dwarf variety, hybrid rice, and new plant type of ricewere being developed by Indonesian breeders. However,new method is needed to complement conventionalbreeding method in order to accelerate rice breeding.Anther culture is one of in vitro culture techniques that canbe used to accelerate the obtainment of pure lines throughdoubled-haploids (DHs) regenerated at first generation ofculture for less than one year. Thus, application of antherculture in conventional breeding will increase the efficiencyof selection process as well as reducing the cost for labour,land and breeder’s time. The obtainment of green plantletsderived from anther culture of indica rice subspecies hasbeen improved by the addition of 1 mM putrescine intoinduction and regeneration media. Recently, several uplandrice lines tolerant to abiotic stresses (i.e. low light intensityand aluminum toxicity) and biotic stresses (i.e. leaf andneck blast), several lowland rice/paddy lines tolerant tobiotic stresses (i.e. bacterial leaf blight and blast), andseveral hybrid parental lines (i.e. male sterile, maintainerand restorer) were obtained in 2-3 years from several ricebreeding program involving anther culture. However,potential use anther culture to provide unique geneticmaterial for mapping populations for use in functionalgenomics and molecular breeding has not been explored.The results indicated that anther culture is a feasibletechnology that can be used for accelerating rice breedingprogram in Indonesia
Karakterisasi Kemiripan Genetik Koleksi Inbrida Jagung Berdasarkan Marka Mikrosatelit
Get PDFInformation on genetic relationships among available crop germplasm such as maize inbred lines, has important implications to breeding programs. A set of 26 maize inbreds togeher with six standard lines from CIMMYT (CML51, CML292, CML202, CML206, CML236, dan CML396), was characterized using 26 SSR markers, which were coverage of the maize genomes. The objective of this study was to analyze genetic diversities among the Indonesian maize inbred collections. Polymorphism Information Content (PIC) value and the observed genetic distance indicated the existence of large variabilities among the inbreds. Cluster analysis based on 27% of the Jaccard’s similarity coefficient placed the inbreds into three groups. Genetic distances among all the possible pairs without the standard maize lines varied from 0.32 (KSX360F2-5-1-3-1v vs KSX2601F2-5-1-1-v) to 0.88 (PT963298-1-B-B-Bv vs Mr13). Cluster and Principal Coordinate Analysis of the genetic distances, revealed a clear differentiation of the inbred lines into groups according to their source populations. This clustering were consistent with those of the known pedigree records of the inbreds based on their morphological characters. These results support the use of morphological traits in the production of maize hybrids. The SSR markers proved to be effective to characterize, identify, and demonstrate genetic similarities among the maize inbred lines
ULASAN Masalah Pencoklatan pada Kultur Jaringan
Get PDFSeveraltropical plant species contain high concentrations of phenoliccompounds, which become oxidised when their cellsare wounded or when the plant parts become senescences.In tissue culture, the phenolic compounds usually leach intothe medium from the cut surfaces of explants. The phenoliccompounds caused the culture medium turns to dark brownin colour due to oxidation. This is detrimental to the culture,because it causes the isolated tissue fails to grow. Thebrowning of tissue culture and the medium can often beprevented by one of the several different approaches, suchas by removing the phenolic compounds produced, modifyingthe redox potential, inactivating phenolase enzymes,reducing phenolase activity and substrate availability, as wellas pre-treatments by soaking and preconditioning on a basalmedium
Indirect Organogenesis and Somatic Embryogenesis of Pineapple Induced by Dichlorophenoxy Acetic Acid
Get PDFThis research aimed to study the effect of 2,4-D,AdS, and basal media to the regeneration of pineapplethrough indirect organogenesis and somatic embryogenesis,and to study the complete event of somatic embryogenesis.Callus formation was induced by 21, 41, and 62 μM 2,4-Dwith addition of 9 μM TDZ. The non embryogenic calli weretransferred onto 4.65 μM Kn containing medium.Embryogenic callus formation was induced on MS or Bacbasal media consisted of N-organic compounds withaddition of AdS (0, 0.05 and 0.1 μM). The embryogenic calliwere regenerated on modified MS medium with addition of0.9 μM IBA, 1.1 μM BA, 0.09 μM GA3 or MS mediumsupplemented with 0.018 mM BA. The result proved that thesingle auxin of 2,4-D was not enough to induce embryogeniccells. Therefore the non embryogenic calli were regeneratedthrough organogenesis. The 21 μM 2,4-D yielded high level ofcallus formation (80%), higher fresh weight (0.2 g/explant)and higher number of shoot (25 shoots/explant in twomonths). Embryogenic calli were produced on N-organiccompounds enriched media. The regeneration mediumsignificantly affected the level of browning, where the MSmedium with addition of 0.018 mM BA yielded lower level ofbrowning. There was an interaction of embryogenic callusinduction medium and regeneration medium to the numberof mature somatic embryos. The embryogenic callusinduction on MS medium enriched with N-organiccompounds and 0.05 μM AdS followed by the regenerationof somatic embryos on MS medium with addition of 0.018mM BA was the best treatment which yielded 17 maturesomatic embryos/explant
Kultur Apeks untuk Penyediaan Bibit Unggul Tebu Varietas PS864 dan PS881
Get PDFIn vitro culturetechniques have become alternative to help overcome theproblems those are often encountered in the provision ofseeds through conventional means. Micropropagationthrough apex culture in sugarcane has several advantages,such as the produced plants have higher genetic stability,high multiplication rate, and more healthy seeds (especiallyvirus-free)., The aims of the the research were to produceseeds of two varieties of sugarcane, namely PS864 andPS881, through apex culture. Laboratory-scale research wasconducted at the Indonesian Center for AgriculturalBiotechnology and Genetic Resources Research andDevelopment (ICABIOGRAD), Bogor, while sowing seedsnursery was done in the Experimental Station of Gowa,South Sulawesi Assessment Institute for AgriculturalTechnology. The experiments consisted of initiation andregeneration of apexes, shoots multiplication, rootinginduction, and acclimatization of plantlets. Research resultsshowed the initiation and regeneration of PS864 and PS881through apex culture could be done on MS basic mediumcontaining 0.5 mg/l BAP. Shoot proliferation of both varietiesincreased in the second subculture. Addition of 1 mg/l BAPinto medium in the second subculture resulted in higheraverage number of shoots than that of 5 mg/l BAP, both forPS864 and PS881. Addition of 1 mg/l and 5 mg/l kinetinshowed no significant differences for shoot numberscompared to that of PS864 in medium containing 1 mg/lBAP. The average number of PS881 shoots in multiplicationmedia containing 5 mg/l kinetin was higher than that of 1mg/l kinetin. Increased concentrations of NAA and IBA from0.1 mg/l to 0.5 mg/l in the MS medium were correlated to theincreased number of roots in PS864 shoots. Meanwhile, onlyincreased concentration of NAA that affected rooting percentageof PS881. Acclimatization showed the percentage ofthe plantlets grown in polybags was higher than that directlygrown in planting bed. The primary seeds (G0) produced inthese experiments were ready to be reproduced again toobtain further stages
Development and Characterization of F2 Population for Molecular Mapping of Aluminum-Toxicity Tolerant QTL in Soybean
Get PDFKeracunan aluminium merupakan salah satukendala utama dalam budidaya kedelai pada lahan masam.Pembentukan populasi F2 merupakan langkah awal yangmenentukan keberhasilan program pemuliaan tanaman. Tujuanpenelitian ini untuk membentuk dan mengkarakterisasipopulasi F2 hasil persilangan tetua toleran dan tetua pekakeracunan Al. Pembentukan populasi dilakukan menggunakanbantuan marka SSR. Dengan marka SSR populasi dapatdibentuk dengan cepat, akurat, dan efisien. Skrining genotipakedelai pada tanah masam kahat hara menghasilkan duagenotipa toleran dan dua peka. Empat persilangan tunggaldibuat untuk mendapatkan benih F1. Tanaman F1 dan F2 diidentifikasimenggunakam marka SSR Satt_070. Dua populasi(B3462 X B3293 dan B3462 X B3442) dipilih berdasarkansuperiotas fenotipa pada lahan masam dan karakteristik molekulerpasangan tetua. Karakterisasi kedua populasi di lapangmenunjukkan transgresiveness luas untuk karakter reproduksiseperti jumlah polong dan berat 100 biji. Ini mengindikasikanbahwa karakter penting lain selain karakter ketahananterhadap keracunan Al potensial untuk dipetakandari populasi ini. Metoda pembentukan populasi ini akan sangatbermanfaat bagi pemulia tanaman khususnya pemuliakedelai untuk meningkatkan efisiensi program pemuliaanketahanan terhadap keracunan Al
Pencarian Alel untuk Identifikasi Gen Ketahanan Penyakit Hawar Daun Bakteri, Xa7 pada Plasma Nutfah Padi Lokal Indonesia
Get PDFAllele Mining of Bacterial Blight Resistance Gene, Xa7 onIndonesian Local Rice Germplasm. Dwinita W. Utami,Endang M. Septiningsih, Trini S. Kadir, Fatimah, and SitiYuriyah. The abundance of novel genetic variation existingin germplasm collections is the foundation for varietyimprovement in plant breeding program. Nevertheless,studies on Indonesian genetic diversity rice germplasmusing molecular markers are still poorly. Recent advances inutilizing of simple sequence repeat (SSR) in QTL mappingand whole rice genome sequences were positive support ongenetic diversity of rice germplasm research. Based on theseadvance technology, we developed the research to discovernew alleles at important gene loci that can be used for riceimprovement. This approach is recognized as allele miningtechnology. On this study the target genes for allele miningresearch is the resistance gene for bacterial leaf blightpathogen, Xa7. This point was introduced by identify thegenetic diversity of 96 accessions Indonesian local ricegermplasm. The Xa7 allele mining was done by SNP (singlenucleotide polymorphism) designing primers based on DNAsequence around the gene target. The significant LD mapwas detected by association mapping between phenotypeand SNP genotyping data of the selected germplasm whichhaving superior performance on BLB resistance andrepresenting on genetic diversity clustering. The resultsshown that Xa7 allele variation were found in Parekaligolara(Indica, 15141), and Gajah Mada (Indica, 5856), whichresistant to BLB races IV and VIII on generative stage andfield condition. The significant Xa7-SNP8 and Xa7-SNP11markers were associating with the LD map position of Xa7gene on 28, 05-28,1Mb of chromosome 6 in rice genome
Pengaruh Iradiasi Sinar Gama terhadap Pertumbuhan dan Regenerasi Kalus Padi Varietas Ciherang dan Inpari 13
Get PDFEffect of gamma irradiation on rice callus dependson the irradiation dose used. Irradiation dose is one of thefactors that affect the genetic changes in the cells of plants.High doses can result in tissue death, meanwhile low doseswill result in abnormal changes in plant phenotype. The levelof sensitivity of a plant tissue against gamma irradiation isdifferent. This study aimed to evaluate the growth andregeneration of callus in various irradiation doses of gammaray. The plant materials used were mature embryos of ricevar. Ciherang and Inpari 13. This study used a completelyrandomized design with gamma irradiation treatment atdoses of 10, 20, 30, 40, 50, 60, 70, 80, 90, and 100 Gy. Eachtreatment consisted of 10 replicates with 5 embryogenic calliper bottle. The results showed that the increasing doses ofgamma irradiation increased the percentage of dead callus,inhibited callus growth, and its ability to regenerate. Thehigh percentages of callus of Ciherang and Inpari 13 thatformed green spots and adventitious shoots were mostlyobtained from controls. The percentages decreased atirradiation doses of 10, 20, 30, and 40 Gy. Moreover, the calliof Ciherang and Inpari 13 were not able to form adventitiousshoots at irradiation doses higher than 40 Gy and 30 Gy,respectively