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Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (<i>Scophthalmus maximus</i>)
Get PDFUnraveling adaptive genetic variation represents, in addition to the estimate of population demographic parameters, a cornerstone for the management of aquatic natural living resources, which, in turn, represent the raw material for breeding programs. The turbot (Scophthalmus maximus) is a marine flatfish of high commercial value living on the European continental shelf. While wild populations are declining, aquaculture is flourishing in southern Europe. We evaluated the genetic structure of turbot throughout its natural distribution range (672 individuals; 20 populations) by analyzing allele frequency data from 755 single nucleotide polymorphism discovered and genotyped by double‐digest RAD sequencing. The species was structured into four main regions: Baltic Sea, Atlantic Ocean, Adriatic Sea, and Black Sea, with subtle differentiation apparent at the distribution margins of the Atlantic region. Genetic diversity and effective population size estimates were highest in the Atlantic populations, the area of greatest occurrence, while turbot from other regions showed lower levels, reflecting geographical isolation and reduced abundance. Divergent selection was detected within and between the Atlantic Ocean and Baltic Sea regions, and also when comparing these two regions with the Black Sea. Evidence of parallel evolution was detected between the two low salinity regions, the Baltic and Black seas. Correlation between genetic and environmental variation indicated that temperature and salinity were probably the main environmental drivers of selection. Mining around the four genomic regions consistently inferred to be under selection identified candidate genes related to osmoregulation, growth, and resistance to diseases. The new insights are useful for the management of turbot fisheries and aquaculture by providing the baseline for evaluating the consequences of turbot releases from restocking and farming
Supercritical CO<sub>2</sub> extraction of <i>Nannochloropsis</i> sp.: a lipidomic study on the influence of pretreatment on yield and composition
Get PDFAlgal lipids have gained wide interest in various applications ranging from biofuels to nutraceuticals. Given their complex nature composed of different lipid classes, a deep knowledge between extraction conditions and lipid characteristics is essential. In this paper, we investigated the influence of different pretreatments on lipid extraction with supercritical CO2 by a lipidomic approach. Pretreatment was found to double the total extraction yield, thereby reaching 23.1 wt.% comparable to the 26.9 wt.% obtained with chloroform/methanol. An increase in acylglycerides was concurrently observed, together with a nearly doubling of free fatty acids indicative of partial hydrolysis. Moreover, an alteration in the distribution of glyco- and phospholipids was noted, especially promoting digalactosyldiglycerides and phosphatidylcholine as compared to monogalactosyldiglycerides and phosphatidylglycerol. At optimized conditions, supercritical CO2 extraction provided a lipid extract richer in neutral lipids and poorer in phospholipids as compared to chloroform/methanol, though with a very similar fatty acid distribution within each lipid class
The genus <i>Charcotia</i> Chevreux, 1906 in the Southern Ocean, with the description of a new species (Crustacea, Amphipoda, Lysianassoidea)
Get PDFIt is demonstrated here that Charcotia Chevreux, 1906 (Amphipoda) has priority over Charcotia Vayssière, 1906 (Gastropoda), and that Waldeckia Chevreux, 1906 has to be treated as an invalid objective junior synonym of Charcotia Chevreux, 1906. An analysis of a part of the mitochondrial COI gene of Charcotia indicates that Charcotia obesa sensu lato, consists of two genetically distant clades that fulfil the criteria of genetic species. Each genetic clade corresponds to a different morphotype. The first one has a low triangular protrusion on the dorsal border of urosomite 1, a strong tooth on epimeron 3, and the posterodistal corner of the basis of pereiopod 7 is regularly rounded. It agrees with the original description of Charcotia obesa Chevreux, 1906. The second one has a protrusion of urosomite 1 prolongated by a sharp and usually long denticle, a small tooth on epimeron 3, and the posterodistal corner of the basis of pereiopod 7 is bluntly angular. The second form is treated herein as a new species, Charcotia amundseni sp. nov., which is described in detail. While the bathymetric distribution of the two Antarctic Charcotia species overlaps (0–300 m for C. obesa and 7–1200 m for C. amundseni sp. nov.), C. obesa largely predominates at depths of less than 150 m, while Charcotia amundseni sp. nov. predominates at greater depths. Both species are widely distributed and presumably circum-Antarctic
A critical revision of the fossil record, stratigraphy and diversity of the Neogene seal genus <i>Monotherium</i> (Carnivora, Phocidae)
Get PDFHistorically, Monotherium had been one of the few genera of extinct Phocidae (true seals) that served as a wastebin taxon. Consequently, it did neither aid in understanding phylogenetic relationships of extinct Phocidae, nor in understanding seal diversity in deep time. This urged the reassessment of the genus. Before our review, Monotherium included five different species: Monotherium aberratum, Monotherium affine, and Monotherium delognii from Belgium; Monotherium gaudini from Italy; and Monotherium? wymani from the east coast USA. In this work we redescribe the fossil record of the genus, retaining the type species M. delognii. Monotherium aberratum and M. affine are reassigned to the new phocine genus Frisiphoca. Monotherium gaudini is renamed and considered a stem-monachine (Noriphoca gaudini). The holotype of the monachine M.? wymani requires further study pending the discovery of new fossil material that could be attributed to the same taxon. Reinvestigating the stratigraphic context reveals that N. gaudini most likely represents one of the two oldest named phocid seals, or even the oldest, dated to the late Oligocene–earliest Miocene. Our results allow questioning the widespread idea that Phocidae originated in the western Atlantic and better appreciate their palaeobiogeography during the late Oligocene–Miocene interval in the North Atlantic realm
Species replacement dominates megabenthos beta diversity in a remote seamount setting
Get PDFSeamounts are proposed to be hotspots of deep-sea biodiversity, a pattern potentially arising from increased productivity in a heterogeneous landscape leading to either high species co-existence or species turnover (beta diversity). However, studies on individual seamounts remain rare, hindering our understanding of the underlying causes of local changes in beta diversity. Here, we investigated processes behind beta diversity using ROV video, coupled with oceanographic and quantitative terrain parameters, over a depth gradient in Annan Seamount, Equatorial Atlantic. By applying recently developed beta diversity analyses, we identified ecologically unique sites and distinguished between two beta diversity processes: species replacement and changes in species richness. The total beta diversity was high with an index of 0.92 out of 1 and was dominated by species replacement (68%). Species replacement was affected by depth-related variables, including temperature and water mass in addition to the aspect and local elevation of the seabed. In contrast, changes in species richness component were affected only by the water mass. Water mass, along with substrate also affected differences in species abundance. This study identified, for the first time on seamount megabenthos, the different beta diversity components and drivers, which can contribute towards understanding and protecting regional deep-sea biodiversity
