Spanish Journal of Agricultural Research
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A comparative analysis of genetic diversity in Portuguese grape germplasm from ampelographic collections fit for quality wine production
No full textGrapevine cultivars diversity is vast and full of synonyms and homonyms. Up to few decades ago characterization of grapevine was based on morphological characters. In the last decades, molecular markers were developed and have been used as tools to study genetic diversity in a range of different plant species. Fifty-six Portuguese accessions representative of ‘Vinhos Verdes’ and ‘Douro’ Controlled Designations of Origin (DOC) were analysed through DNA fingerprints generated by Random Amplified Polymorphic DNA (RAPD) and Inter Simple Sequence Repeat (ISSR). The study aimed to compare the effectiveness of RAPD and ISSR molecular techniques in the detection of synonyms, homonyms and misnames. RAPD and ISSR analysis enabled the detection of 36 different band patterns, reducing in about 36% the initial material. Several accessions grown under different names, between and within collections, were confirmed as the same genotype, namely Gouveio/Verdelho, Sousão Douro/Vinhão and Arinto Oeste/Pedernã. Similarly, some homonyms/misnames were also identified, namely within Azal Tinto and Rabigato accessions. RAPD and ISSR markers revealed to be adequate molecular techniques for grapevine varieties fingerprinting with advantages over other molecular procedures, contributing for a good management of grapevine collections
Effects of a tannin-rich legume (Onobrychis viciifolia) on in vitro ruminal biohydrogenation and fermentation
No full textThere is still controversy surrounding the ability of tannins to modulate the ruminal biohydrogenation (BH) of fatty acids (FA) and improve the lipid profile of milk or meat without conferring a negative response in the digestive utilization of the diet. Based on this, an in vitro trial using batch cultures of rumen microorganisms was performed to compare the effects of two legume hays with similar chemical composition but different tannin content, alfalfa and sainfoin (Onobrychis viciifolia), on the BH of dietary unsaturated FA and on the ruminal fermentation. The first incubation substrate, alfalfa, was practically free of tannins, while the second, sainfoin, contained 3.5% (expressed as tannic acid equivalents). Both hays were enriched with sunflower oil as a source of unsaturated FA. Most results of the lipid composition analysis (e.g., greater concentrations of 18:2n-6, cis-9 18:1 or total polyunsaturated FA in sainfoin incubations) showed the ability of this tannin-containing legume to inhibit the BH process. However, no significant differences were detected in the accumulation of cis-9 trans-11 conjugated linoleic acid, and variations in trans-11 18:1 and trans-11 cis-15 18:2 did not follow a regular pattern. Regarding the rumen fermentation, gas production, ammonia concentration and volatile FA production were lower in the incubations with sainfoin (‒17, ‒23 and ‒11%, respectively). Thus, although this legume was able to modify the ruminal BH, which might result in improvements in the meat or milk lipid profile, the present results were not as promising as expected or as obtained before with other nutritional strategies
Effects of rhizobacteria on the respiration and growth of Cerasus sachalinensis Kom. seedlings
No full textIn this study, we investigated the influence of rhizosphere microorganisms on seed germination and root metabolism in Cerasus sachalinensis Kom. We inoculated C. sachalinensis plants with suspensions of dominant bacterial strains isolated from their rhizosphere. Four bacterial strains each with significant growth-promoting or growth-inhibiting effects were screened from the efficient root-colonizing microorganisms. The number of actinomycetes increased and that of fungi decreased significantly in the seedling rhizospheres after rhizobacteria treatment. The growth-promoting bacteria slightly affected the respiration rates and respiratory pathway enzymes, but significantly improved root viability, root carbohydrate concentration and seedling growth. Bacillus cereus, Staphylococcus sp. and Pseudomonas fluorescens were identified as the growth-promoting rhizobacteria; one strain could not be identified. After inoculation with the growth-inhibiting bacteria, the number of fungal colonies in the seedling rhizospheres increased and root viability and respiration rate as well as starch and sucrose accumulation in the roots significantly decreased. The glycolysis, pentose phosphate and alternative oxidase pathways became the major pathways of respiratory metabolism after inoculation with the growth-inhibiting bacteria. The height, leaf number, growth and dry weight of the seedlings decreased significantly in plants inoculated with the growth-inhibiting bacteria. Inoculation of C. sachalinensis rhizosphere with growth-promoting and growth-inhibiting bacteria affected the soil environmental factors such as microbial group composition, nutrient concentration and seedling biomass
Effects of nitrogen and phosphorus fertilizer on crop yields in a field pea-spring wheat-potato rotation system with calcareous soil in semi-arid environments
No full textThe object of the present study was to investigate the yield-affecting mechanisms influenced by N and P applications in rainfed areas with calcareous soil. The experimental treatments were as follows: NF (no fertilizer), N (nitrogen), P (phosphorus), and NP (nitrogen plus phosphorus) in a field pea-spring wheat-potato cropping system. This study was conducted over six years (2003-2008) on China’s semi-arid Loess Plateau. The fertilizer treatments were found to decrease the soil water content more than the NF treatment in each of the growing seasons. The annual average yields of the field pea crops during the entire experimental period were 635, 677, 858, and 1117 kg/ha for the NF, N, P, and NP treatments, respectively. The annual average yields were 673, 547, 966, and 1056 kg/ha for the spring wheat crops for the NF, N, P, and NP treatments, respectively. Also, the annual average yields were 1476, 2120, 1480, and 2424 kg/ha for the potato crops for the NF, N, P, and NP treatments, respectively. In the second cycle of the three-year rotation, the pea and spring wheat yields in the P treatment were 1.2 and 2.8 times higher than that in the N treatment, respectively. Meanwhile, the potato crop yield in the N treatment was 3.1 times higher than that in the P treatment. In conclusion, the P fertilizer was found to increase the yields of the field pea and wheat crops, and the N fertilizer increased the potato crop yield in rainfed areas with calcareous soil
Development of a remote sensing-based rice yield forecasting model
No full textThis study aimed to develop a remote sensing-based method for forecasting rice yield by considering vegetation greenness conditions during initial and peak greenness stages of the crop; and implemented for “boro” rice in Bangladeshi context. In this research, we used Moderate Resolution Imaging Spectroradiometer (MODIS)-derived two 16-day composite of normalized difference vegetation index (NDVI) images at 250 m spatial resolution acquired during the initial (January 1 to January 16) and peak greenness (March 23/24 to April 6/7 depending on leap year) stages in conjunction with secondary datasets (i.e., boro suitability map, and ground-based information) during 2007-2012 period. The method consisted of two components: (i) developing a model for delineating area under rice cultivation before harvesting; and (ii) forecasting rice yield as a function of NDVI. Our results demonstrated strong agreements between the model (i.e., MODIS-based) and ground-based area estimates during 2010-2012 period, i.e., coefficient of determination (R2); root mean square error (RMSE); and relative error (RE) in between 0.93 to 0.95; 30,519 to 37,451 ha; and ±10% respectively at the 23 district-levels. We also found good agreements between forecasted (i.e., MODIS-based) and ground-based yields during 2010-2012 period (R2 between 0.76 and 0.86; RMSE between 0.21 and 0.29 Mton/ha, and RE between -5.45% and 6.65%) at the 23 district-levels. We believe that our developments of forecasting the boro rice yield would be useful for the decision makers in addressing food security in Bangladesh
Effect of chestnuts level in the formulation of the commercial feed on carcass characteristics and meat quality of Celta pig breed
No full textThe effect of including chestnuts in the formulation of the feed on carcass characteristics and meat quality from 24 castrated males Celta pigs was studied. The inclusion of 15% of chestnut (CH15) improved (p<0.01) the carcass (118 vs. about 104 kg) and live weights (149 vs. 133-139 kg). Killing out percentage was also better for chestnuts groups than for control group. With regards the morphometric parameters, there were no statistically significant (p>0.05) differences except for the carcass length and ham length, for which the CH15 group proved to be the group with the longest sizes. The diet did not affect the physicochemical properties (colour parameters, water holding capacity and shear force) of longissimus dorsi muscle. The composition of some fatty acids of the longissimus dorsi muscle was affected by diet. The total saturated (35-38%) and total polyunsaturated fatty acids (8-10%) did not present differences. However, the increase of chestnut in the diet increased (p<0.05) the monounsaturated fatty acids in intramuscular fat (57% in CH25 vs. 53% in control and CH15). Within monounsaturated fatty acids, the C18:1n9 was the most influenced by the diet. The expression of the enzyme that synthesizes C18:1n9 depend on the composition of the diet. Therefore, the lower content of protein and the higher amounts of C18:1n9 and C18:2n6 in the chestnut could be explaining the greater content of C18:1n9 in muscle of chestnut-fed animals. The main conclusion is that including chestnuts in the diet would allow reduce production costs with no effect or even improving carcass measurements and meat quality
Genetic relationships between interspecific lines derived from Oryza glaberrima and Oryza sativa crosses using microsatellites and agro-morphological markers
No full textNew Rice(s) for Africa (NERICA) are high yielding rice varieties mostly cultivated in Sub-Saharan Africa and developed by the Africa Rice Center. This study is aimed at investigating the proportion of introgression of parental genomic contribution of 60 lowland NERICA varieties and establishment of molecular profiling. Agro-morphological data from 17 characteristics was recorded and significant (p<0.05) to high significant (p<0.0001) differences were obtained with leaf length and width, plant height at maturity, days to heading, maturity, primary and secondary branching of panicles, and grain width and grain thickness. A total of 114 microsatellite polymorphic markers covering 2183.13 cM of the rice genome showed the proportions of alleles introgressed from the donor parent (Oryza glaberrima) into 52 lowland NERICA lines (TOG5681 and IR64) as follows: 11% for BC2, 6.07% for BC3, and 7.55% for BC4. The introgression proportions for the eight remaining lowland NERICA lines derived from other crosses ranged from 5.5 to 11.3%. The proportion recorded with the recurrent parent was 83.99%. The highest introgression proportions of the O. glaberrima allele for all 60 lowland NERICA lines were found on chromosomes 2, 6 and 12 (TOG5681/IR64) and on chromosome 3 with NERIC-L-29 (TOG5681/IR1529-680-3-2). Multivariate analyses performed using an association of agro-morphological and molecular data revealed two major groups according to the distribution of the lowland NERICAs including the lowland NERICAs released were found in cluster 1 of the dendrogram. Genetic and genomic studies, QTL identification and analysis using agro-morphologically significant traits revealed should be used to develop mega-varieties adapted in rice growth conditions in Sub-Saharan Africa
Search for potential vectors of ‘Candidatus Liberibacter solanacearum’: population dynamics in host crops
No full text‘Candidatus Liberibacter solanacearum’ has recently been reported to be associated with vegetative disorders and economic losses in carrot and celery crops in Spain. The bacterium is a carrot seedborne pathogen and it is transmitted by psyllid vector species. From 2011 to 2014 seasonal and occasional surveys in carrot, celery and potato plots were performed. The sticky plant method was used to monitor the arthropods that visited the plants. The collected arthropods were classified into Aphididae and Cicadellidae, and the superfamily Psylloidea was identified to the species level. The superfamily Psylloidea represented 35.45% of the total arthropods captured on celery in Villena and 99.1% on carrot in Tenerife (Canary Islands). The maximum flight of psyllid species was in summer, both in mainland Spain and the Canary Islands, reaching a peak of 570 specimens in August in Villena and 6,063 in July in Tenerife. The main identified psyllid species were as follows: Bactericera trigonica Hodkinson, B. tremblayi Wagner and B. nigricornis Förster. B. trigonica represented more than 99% of the psyllids captured in the Canary Islands and 75% and 38% in 2011 and 2012 in Villena, respectively. In addition, Trioza urticae Linnaeus, Bactericera sp., Ctenarytaina sp., Cacopsylla sp., Trioza sp. and Psylla sp. were captured. ‘Ca. L. solanacearum’ targets were detected by squash real-time PCR in 19.5% of the psyllids belonging to the different Bactericera species. This paper reports at least three new psyllid species that carry the bacterium and can be considered as potential vectors
Fungal trunk pathogens associated with wood decay of pistachio trees in Iran
No full textOver the growing seasons of 2011–2013, various pistachio (Pistacia vera L.) cv. Fandoghi, and wild pistachio (P. atlantica Desf. subsp. mutica) trees were inspected in Iran to determine the aetiology of trunk diseases with specific reference to species of Phaeoacremonium and Botryosphaeriaceae spp. Samples were collected from branches of trees exhibiting yellowing, defoliation, canker and dieback, as well as wood discoloration in cross sections. Fungal trunk pathogens were identified using morphological and cultural characteristics as well as comparisons of DNA sequence data of the ITS and TEF-1α (for Botryosphaeriaceae species) and β-tubulin gene (for Phaeoacremonium species) regions. Phaeoacremonium parasiticum was the dominant species followed by Phaeoacremonium aleophilum, Botryosphaeria dothidea, Neofusicoccum parvum, Phaeoacremonium cinereum, Phaeoacremonium viticola and Dothiorella viticola. Pathogenicity tests were undertaken to determine the role of these species on pistachio under field conditions. Neofusicoccum parvum and Pm. aleophilum caused the longest and smallest lesions respectively. This study represents the first report on the occurrence and pathogenicity of Phaeoacremonium species on P. vera cv. Fandoghi. This also represents the first report of Pleurostomophora sp. on pistachio and Pm. parasiticum and D. viticola on wild pistachio