Nature Precedings
Not a member yet
3446 research outputs found
Sort by
Inter-Tunneling Mechanism of Colliding Population Waves
Get PDFHere we show a new interaction mechanism of colliding population waves. It provides a stable coexistence of two similar but different species competing for the same limiting resource during their asexual propagation in a limited homogeneous environment under constant conditions. The revealed mechanism opens new opportunities in conservation biology
AntEpiSeeker2.0: extending epistasis detection to epistasis-associated pathway inference using ant colony optimization
Get PDFGenome-wide association studies (GWAS) have become a standard method for finding genetic variations that contribute to common, complex diseases. Recently, it is suggested that these diseases may be caused by epistatic interactions of multiple genetic variations. Although tens of software tools have been developed for epistasis detection, few are able to infer pathway importance from the identified epistatic interactions. AntEpiSeeker is originally an algorithm for detecting epistatic interactions in case-control studies, using a two-stage ant colony optimization (ACO) algorithm. We have developed AntEpiSeeker2.0, which extends the AntEpiSeeker algorithm to inference of epistasis-associated pathways, based on a natural use of the ACO pheromones. By looking at pheromone distribution across pathways, epistasis-associated pathways can be easily identified. The effectiveness of AntEpiSeeker2.0 in inferring epistasis-associated pathways is demonstrated through a simulation study and a real data application. AntEpiSeeker 2.0 was designed to provide efficient inference of epistasis-associated pathways based on ant colony optimization and is freely available at http://lambchop.ads.uga.edu/antepiseeker2/
An emerging protagonist: Sodium Glucose Co-transporters (SGLTs) as a burgeoning target for the treatment of diabetes mellitus
Get PDFContemporary therapies to rationalize the hyperglycaemia in type 2 diabetes mellitus (T2DM) generally involve insulin-dependent mechanisms and lose their effectiveness as pancreatic b-cell function decreases to a greater extent. The kidney emerges out as a novel and potential target to trim down the T2DM. The filtered glucose is reabsorbed principally through the sodium glucose co-transporter-2 (SGLT2), a low affinity transport system, which is present at the luminal surface cells that cover the first segment of proximal tubules. Competitive inhibition of SGLT2 therefore represents an innovative therapeutic strategy for the treatment of hyperglycaemia and/or obesity in patients with type 1 or type 2 diabetes by enhancing glucose and energy loss through the urine. Selective inhibitors of SGLT2 reduce glucose reabsorption, causing excess glucose to be eliminated in the urine; this decreases plasma glucose. SGLT2 inhibitors are coupled with osmotic dieresis and loss of weight which aid in reducing blood pressure. The observation that individuals with familial renal glycosuria maintain normal long-term kidney function provides some encouragement that this mode of action will not adversely affect renal function. This novel mechanism of targeting the kidney for the treatment of T2DM is reasonably valuable and is independent of insulin and clutch with the low risk of hypoglycemia
Molecular Models of DNA Structures and Dynamics: Principles, Techniques and Applications
Get PDFMolecular models of DNA structures are representations of the molecular geometry and topology of Deoxyribonucleic acid (DNA) molecules using one of several means, such as: closely packed spheres (CPK models) made of plastic, metal wires for 'skeletal models', graphic computations and animations by computers, artistic rendering, and so on, with the aim of simplifying and presenting the essential, physical and chemical, properties of DNA molecular structures either in vivo or in vitro. Computer molecular models also allow animations and molecular dynamics simulations that are very important for understanding how DNA functions in vivo
Socio-economic determinants of anthropometric measures of abdominal adiposity among older people in England
Get PDFObjective: to look into the socio-economic determinants of levels of three anthropometric measures of abdominal adiposity among older people in England -body mass index, waist circumference (WC), and waist-hip ratio (WHR)- and of changes along two health risk classifications: the World Health Organisation classification based on BMI levels and the WHO combined classification based on BMI and waist circumference measurements.
Design: quantile regression and multinomial analysis using data from the English Longitudinal Study of Ageing (ELSA), wave 2 (2004-05) and wave 4 (2008-09)
Results: The quantile analysis on levels led to disparate results depending on the wave, which would question results previously published based on only one wave. However, we found that age tends to present an inverse U-shaped relationship with BMI and WC, smoking is negatively associated with BMI and positively with WC and WHR, alcohol consumption is negatively associated with BMI and WC levels, net total wealth is negatively related with the three anthropometric measures, educational attainment is negatively associated with each measure, and depression is positively associated with each measure. The multinomial analysis found that living in a larger household size increases the likelihood of becoming or remaining unhealthy irrespective of which classification we used. Furthermore, using the BMI-based categorisation, the initial category is highly relevant as a predictor of the category four years later and alcohol consumption would be positively associated with being or becoming obese. From the combined BMI-WC categorisation, we found that net total wealth would be negatively associated with becoming or remaining unhealthy whereas depression is a significant predictor of becoming or remaining unhealthy.

Intrarectal administration of hCG (Human Choriogonadotropin) and fat loss as assessed by Dual energy X-ray absorptiometry (DXA) in experimental animals.
Get PDFOur studies suggest that in experimental animals, submitted to a hypocaloric diet, the intrarectal administration of hCG (Human Chorionic Gonadotropin) decreases body fat and increases lean mass content in relative values to a greater extent that control animals who did not receive hCG.

A Note On The Denisova Cave mtDNA Sequence
Get PDFThe recently published Altai fossil sequence from Denisova Cave was purported to be so different from anatomically modern humans, yet have the physiological landmarks of that species designation. When the published sequence was examined it was found that segments in the mtDNA hypervariable regions could be found to align with that of anatomically modern humans if one introduced an insertion at a position found in Neanderthals. Some other points of interest arise from a reconsideration of the sequences for other published samples and Neanderthals from the same perspective
Fundamentals of Molecular Biology
Get PDFWe present some basic concepts of molecular biology and the related open problems
Mapping from Statistical to Biological Proximity
Get PDFWe verify whether the proximity claimed by state-of-the-art statistical similarity measures are indeed biologically appropriate or not. We present some analytical results on it
Better Analysis, Better Acceptance ‐Take up the Challenge of Publishing in Bioinformatics
No full textThis presentation teaches the novice in bioinformatics research to publish quality analysis in good venues