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Complex Plastids and the Evolution of the Marine Phytoplankton
Get PDFPhotosynthesis allows for the formation of biomass from inorganic carbon and therefore greatly enhances the amount of organic material on planet Earth. Especially, oxygenic photosynthesis removed a major bottleneck in the formation of biomass by utilising ubiquitous water (H2O) and CO2 molecules as raw materials for organic molecules. This, over billions of years, shaped the world into the form we know today, with an oxygen-containing atmosphere, largely oxygenated water bodies and landmasses consisting of sediment rocks. Oxygenic photosynthesis furthermore enabled the evolution of aerobic energy metabolism, and it would be very difficult to imagine animal (including human) life in the absence of molecular oxygen as an electron acceptor. Oxygenic photosynthesis first, and exclusively, evolved in cyanobacteria. However, eukaryotes also learned to photosynthesise, albeit with a trick, which is the integration of formerly free-living cyanobacteria into the eukaryotic cell. There, the former bacteria became endosymbionts, and from these endosymbionts, the photosynthetic organelles (termed plastids) evolved. In almost all major groups of eukaryotes, plastid-containing members are found. At the same time, plastid-related features also indicate that these plastids form a monophyletic group. This can be explained by the transfer of plastids between the eukaryotic super-groups, leading to plastids being found in groups that are otherwise non-photosynthetic. In this chapter, we discuss the evolutionary origin of plastids, with a special emphasis on the evolution of plankton algae, such as diatoms or dinoflagellates, who acquired their plastids from other photosynthetic eukaryotes
Intraspecific differences in short- and long-term foraging strategies of reef manta ray (Mobula alfredi) in the Chagos Archipelago
Get PDFAssessing the foraging ecology of a threatened species is necessary to understand their movement behaviour and habitat use patterns, which are essential for developing effective protection strategies. Here, the foraging ecology of reef manta rays (Mobula alfredi) in the Chagos Archipelago, a
region encompassed by a vast no-take marine protected area (MPA), was investigated using stable isotope analysis of skin and muscle tissue. Enriched δ13C values suggest the population predominantly forages in nearshore environments. Skin δ13C values increased with increased rainfall, likely associated with the boosts in primary production and zooplankton biomass due to the coastal advection of seabird guano. Annual variations in δ13C values of skin and muscle were observed and are consistent with reduced nutrient transport associated with the effects of Indian Ocean Dipole oscillations, including a deepening of the thermocline, a suppression of cold-water
upwelling, and reduced rainfall. Short- and long-term foraging strategies and locations were identified by applying hierarchical clustering, isotopic niche analysis, and Bayesian stable isotope mixing models to δ13C and δ15N of paired skin and muscle tissue samples. Two isotopically distinct groups of M. alfredi were identified, employing either local foraging strategies restricted to specific locations or wide-ranging strategies that likely mean they engage in regular migrations
throughout the archipelago. Ninety-eight percent of M. alfredi were estimated to switch between strategies utilising and connecting multiple discrete nearshore habitats, emphasising their role in ecosystem functioning by facilitating the transport of nutrients across ecosystem boundaries.
However, illegal, unreported, and unregulated fishing and lost or abandoned fishing gear commonly occur within the MPA. Locations of particular concern are Egmont Atoll as it is a
highly active aggregation location and Peros Banhos Atoll where IUU frequently occurs and M. alfredi are estimated to be heavily reliant upon for foraging. Frequent migrations between
atolls by M. alfredi also raises concern over their vulnerability to these activities along migration corridors. This research bridges current knowledge gaps in this population’s foraging ecology and concomitant movement patterns, which should inform conservation strategies in the region
Metrics matter: Multiple diversity metrics at different spatial scales are needed to understand species diversity in urban environments
No full textWorldwide, natural habitats are being replaced by artificial structures due to urbanisation. Planning of such modifications should strive for environmental net gain that benefits biodiversity and ecosystems. Alpha (α) and gamma (γ) diversity are often used to assess ‘impact’ but are insensitive metrics. We test several diversity measures across two spatial scales to compare species diversity in natural and artificial habitats. We show γ-diversity indicates equivalency in biodiversity between natural and artificial habitats, but natural habitats support greater taxon (α) and functional richness. Within-site β-diversity was also greater in natural habitats, but among-site β-diversity was greater in artificial habitats, contradicting the commonly held view that urban ecosystems are more biologically homogenous than natural ecosystems. This study suggests artificial habitats may in fact provide novel habitat for biodiversity, challenges the applicability of the urban homogenisation concept and highlights a significant limitation of using just α-diversity (i.e., multiple metrics are needed and recommended) for assessing environmental net gain and attaining biodiversity conservation goals
Latitudinal variation in the potential activity of Atlantic Ocean bacterioplankton revealed through 16S rRNA and 16S rRNA gene metabarcoding
Get PDFThe activities of bacterioplankton sustain open ocean biogeochemical and ecological processes, however, little is known about the activity of specific bacterioplankton, especially related to their biogeography across oceanic scales. The Atlantic is the second largest of the world’s oceans and has an essential role in the global carbon cycle. Here, we show congruence in the structure of 16S rRNA and 16S rRNA gene derived bacterioplankton communities throughout the Atlantic Ocean from temperate to tropical regions. We used 16S rRNA:16S rRNA gene ratios as a phylogenetically resolved proxy for potential activity, demonstrating ocean-scale patterns of putative oligotrophy and copiotrophy in major bacterioplankton groups, with spatial niche partitioning being evident at single-nucleotide resolution within some groups, including the Flavobacteria and SAR86. This study examines the potential structure of the active microbiome of the Atlantic Ocean, providing novel insights into the ecology and life history strategies of both well-known and currently understudied bacterioplankton taxa
Mechanistic simulations of kelp populations in a dynamic landscape of light, temperature, and winter storms
Get PDFKelp forests are widely distributed across the coastal ocean, support high levels of biodiversity and primary productivity, and underpin a range of ecosystem services. Laminaria hyperborea is a forest-forming kelp species in the Northeast Atlantic that alters the local environment, providing biogenic structure for a diversity of associated organisms. Populations are strongly affected by light availability, temperature, and storm-related disturbance. We constructed a stage-based, two-season model of L. hyperborea populations along the coast of Great Britain and Ireland to predict biomass across a range of depths, drawing on extensive surveys and data from the literature. Population dynamics were driven by wave exposure, historic winter storm intensity, and simulated interannual variation in temperature and depth-attenuated light intensity, with density-dependent competition for light and space. High biomass was predicted in shallow depths across the domain on suitable substrate, with populations extending deeper in the north and west where light penetration was greater. Detritus production was heavily skewed across years, particularly at greater depths, with 10 % of years comprising more than 50 % of detritus on average below 10 m depth. Annual fluctuations in light and storm intensity produced opposing population oscillations with a ∼6-year period persisting for up to a decade but diminishing sharply with depth. Interannual variation in temperature had minimal impact. Biomass was most sensitive to survival and settlement rates, with negligible sensitivity to individual growth rates. This model highlights the need for an improved understanding of canopy and subcanopy mortality, particularly regarding increasingly frequent heatwaves. Estimations of kelp forest contributions to carbon sequestration should consider the high variability among years or risk underestimating the potential value of kelp forests. Process-based simulations of populations with realistic spatiotemporal environmental variability are a valuable approach to forecasting biotic responses to an increasingly extreme climat
Reinterpreting two regime shifts in North Sea plankton communities through the lens of functional traits
Get PDFThe so-called regime shifts in North Sea plankton communities provide an important historical case study to understand marine regime shifts. Previous studies characterized regime shifts using a variety of community metrics (e.g., indicator species abundances, taxonomic composition and chlorophyll biomass) but left the functional traits of plankton unassessed. Here, we explicitly re-assess the historically recognized North Sea regime shifts through the lens of plankton functional traits to gain a better understanding of these events
Ecophysiological basis of spatiotemporal patterns in picophytoplankton pigments in the global ocean
Get PDFInformation on the intracellular content and functional diversity of phytoplankton pigments can provide valuable insight on the ecophysiological state of primary producers and the flow of energy within aquatic ecosystems. Combined global datasets of analytical flow cytometry (AFC) cell counts and High-Performance Liquid Chromatography (HPLC) pigment concentrations were used to examine vertical and seasonal variability in the ratios of phytoplankton pigments in relation to indices of cellular photoacclimation. Across all open ocean datasets, the weight-to-weight ratio of photoprotective to photosynthetic pigments showed a
strong depth dependence that tracked the vertical decline in the relative availability of light. The Bermuda Atlantic Time-series Study (BATS) dataset revealed a general
increase in surface values of the relative concentrations of photoprotective carotenoids from the winter-spring phytoplankton communities dominated by low-light acclimated eukaryotic microalgae to the summer and early autumn
communities dominated by high-light acclimated picocyanobacteria. In Prochlorococcus-dominated waters, the vertical decline in the relative contribution of photoprotective pigments to total pigment concentration could be attributed in large part to changes in the cellular content of photosynthetic pigments (PSP) rather than photoprotective pigments (PPP), as evidenced by a
depth-dependent increase of the intracellular concentration of the divinyl chlorophyll-a (DVChl-a) whilst the intracellular concentration of the PPP zeaxanthin remained relatively uniform with depth. The ability of Prochlorococcus cells to adjust their DVChl-a cell-1 over a large gradient in light intensity was reflected in more highly variable estimates of carbon-to-Chl-a ratio
compared to those reported for other phytoplankton groups. This cellular property is likely the combined result of photoacclimatory changes at the cellular level and a
shift in dominant ecotypes. Developing a mechanistic understanding of sources of variability in pigmentation of picocyanobacteria is critical if the pigment markers
and bio-optical properties of these cells are to be used to map their biogeography and serve as indicators of photoacclimatory state of subtropical phytoplankton
communities more broadly. It would also allow better assessment of effects on, and adaptability of phytoplankton communities in the tropical/subtropical ocean due to climate chang
Microplastics in the Arctic: a transect through the Barents Sea
Get PDFGlobally, the abundance of microplastics in our oceans is increasing, including within the remote locations of the polar regions. The Barents Sea, which adjoins the Arctic Ocean, is an area of high primary productivity that, owing to the convergence of regional currents, has been mooted as a potential sixth ocean gyre that may coalesce high concentrations of plastic debris. This study aimed to explore data collected from large volume samples of sub-surface water collected from transects through the Barents Sea to quantify and characterise microplastics in this region, with a focus on potential impacts to zooplankton. Overall, the mean microplastic abundance in the Barents Sea was 0.011 microplastics m-3 (range: 0.007 – 0.015 m-3). Microplastics were found in higher abundances nearer land mass at the southern end of the transect and northwards towards the ice edge, recording 0.015 microplastics m-3 during both transect legs. Microplastics were predominantly fibrous (92.1%) and typically blue (79%) or red (17%) in colour. A range of polymers were identified including polyester (3.8%), copolymer blends (2.7%), elastomers (7.1%) and acrylics (10.6%), however semi-synthetic polymers dominated, comprising 74.4% of particles found. Higher microplastic concentrations in the northernmost transect may stem from melting sea-ice, while the higher concentrations in the southernmost transect likely derive from the long-range transport of microplastics via currents from Europe
Culturing the Plastisphere: comparing methods to isolate culturable bacteria colonising microplastics
Get PDFMicroplastics quickly become colonised by diverse microbial communities, known as the Plastisphere. There is growing concern that microplastics may support the enrichment and spread of pathogenic or antimicrobial resistant microorganisms, although research to support the unique role of microplastics in comparison to control particles remains inconclusive. Limitations to this research include the microbiological methods available for isolating adhered microbes. Culture-based methods provide some of the most established, accessible and cost-effective microbiological protocols, which could be extremely useful in helping to address some of the remaining key questions in Plastisphere research. Previous works have successfully cultured bacteria from plastics, but these have not yet been reviewed, nor compared in efficiency. In this study, we compared four common biofilm extraction methods (swabbing, sonication, vortexing, sonication followed by vortexing) to extract and culture a mixed community of bacteria from both microplastic (polyethylene, polypropylene and polystyrene) and control (wood and glass) particles. Biofilm extraction efficiency and viability of bacterial suspension was determined by comparing CFU/mL of four different groups of bacteria. This was verified against optical density and 16S rRNA qPCR. Overall, we found that all tested methods were able to remove biofilms, but to varying efficiencies. Sonicating particles with glass beads for 15 min, followed by vortexing for a further minute, generated the highest yield and therefore greatest removal efficiency of culturable, biofilm-forming bacteria
Regionally endothermic traits in planktivorous basking sharks Cetorhinus maximus
No full textFew fast-swimming apex fishes are classified as ‘regional endotherms’, having evolved a relatively uncommon suite of traits (e.g. elevated body temperatures, centralised red muscle, and thick-walled hearts) thought to facilitate a fast, predatory lifestyle. Unlike those apex predators, Endangered basking sharks Cetorhinus maximus are massive filter-feeding planktivores assumed to have the anatomy and physiology typical of fully ectothermic fishes. We combined dissections of stranded specimens with biologging of free-swimming individuals and found that basking sharks have red muscle located medially at the trunk, almost 50% compact myocardium of the ventricle, and subcutaneous white muscle temperatures consistently 1.0 to 1.5°C above ambient. Collectively, our findings suggest basking sharks are not full ectotherms, instead sharing several traits used to define a regional endotherm, thus deviating from our current understanding of the species and questioning the link between physiology and ecology of regionally endothermic shark species. With successful forecasting of population dynamics and distribution shifts often improved by accurate physiological data, our results may help explain movement patterns of the species, which could ultimately facilitate conservation effort