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Highly active fish in low oxygen environments: vertical movements and behavioural responses of bigeye and yellowfin tunas to oxygen minimum zones in the eastern Pacific Ocean
No full textOxygen minimum zones in the open ocean are predicted to significantly increase in volume over the coming decades as a result of anthropogenic climatic warming. The resulting reduction in dissolved oxygen (DO) in the pelagic realm is likely to have detrimental impacts on water-breathing organisms, particularly those with higher metabolic rates, such as billfish, tunas, and sharks. However, little is known about how free-living fish respond to low DO environments, and therefore, the effect increasing OMZs will have cannot be predicted reliably. Here, we compare the responses of two active predators (bigeye tuna Thunnus obesus and yellowfin tuna Thunnus albacares) to DO at depth throughout the eastern Pacific Ocean. Using time-series data from 267 tagged tunas (59,910 days) and 3D maps of modelled DO, we find that yellowfin tuna respond to low DO at depth by spending more time in shallower, more oxygenated waters. By contrast, bigeye tuna, which forage at deeper depths well below the thermocline, show fewer changes in their use of the water column. However, we find that bigeye tuna increased the frequency of brief upward vertical excursions they performed by four times when DO at depth was lower, but with no concomitant significant difference in temperature, suggesting that this behaviour is driven in part by the need to re-oxygenate following time spent in hypoxic waters. These findings suggest that increasing OMZs will impact the behaviour of these commercially important species, and it is therefore likely that other water-breathing predators with higher metabolic rates will face similar pressures. A more comprehensive understanding of the effect of shoaling OMZs on pelagic fish vertical habitat use, which may increase their vulnerability to surface fisheries, will be important to obtain if these effects are to be mitigated by future management action
Ocean climate and hydrodynamics drive decadal shifts in Northeast Atlantic dinoflagellates
No full textThe abundance of large marine dinoflagellates has declined in the North Sea since 1958. Although hypotheses have been proposed to explain this diminution (increasing temperature and wind), the mechanisms behind this pattern have thus far remained elusive. In this article, we study the long-term changes in dinoflagellate biomass and biodiversity in relation to hydro-climatic conditions and circulation within the North Atlantic. Our results show that the decline in biomass has paralleled an increase in biodiversity caused by a temperature-induced northward movement of subtropical taxa along the European shelf-edge, and facilitated by changes in oceanic circulation (subpolar gyre contraction). However, major changes in North Atlantic hydrodynamics in the 2010s (subpolar gyre expansion and low-salinity anomaly) stopped this movement, which triggered a biodiversity collapse in the North Sea. Further, North Sea dinoflagellate biomass remained low because of warming. Our results, therefore, reveal that regional climate warming and changes in oceanic circulation strongly influenced shifts in dinoflagellate biomass and biodiversit
The silent majority: pico- and nanoplankton as ecosystem health indicators for marine policy
No full textA healthy marine ecosystem is a fully functioning system, able to supply ecosystem services whilst still maintaining resilience to human-induced environmental change. Monitoring and managing the health of resilient marine ecosystems requires indicators that can assess their biodiversity state and food web functioning. Plankton are crucial components of pelagic habitats, occupying the base of the pelagic food web. Larger plankton have long been used to monitor ecosystem productivity and biodiversity due to their identification via traditional light microscopy. In contrast, the regular monitoring of pico- and nanoplankton (<20 µm; hereafter called “tiny plankton”) only started with the development of flow cytometry techniques, which has limited their inclusion as ecosystem health indicators.
Four UK plankton surveys have sampled and identified these tiny plankton for up to 14 years, providing an opportunity to test their suitability as indicators of ecosystem state. We investigated six groups of tiny plankton, including heterotrophic nanoeukaryotes, photosynthetic nanoeukaryotes, photosynthetic picoeukaryotes, and Synechococcus cyanobacteria, and two groups of heterotrophic bacteria. Flow cytometry and light microscopy data from an inshore Western English Channel station revealed that 99.98 % of plankton abundance and 71 % of plankton biomass was derived from tiny plankton cells too small to be quantified accurately under a light microscope and thus not adequately considered in assessments of pelagic habitats.
Different UK marine and coastal regions showed consistency in peak abundances of these tiny plankton. We used a novel wavelet coherence method to identify time-based relationships between tiny plankton and environmental variables linked to human pressures. Relationships were found between nitrogenous nutrients and all tiny plankton groups, most commonly at sub-annual to annual time scales. Photosynthetic picoeukaryotes, heterotrophic nanoeukaryotes, and HNA-bacteria were associated with high sea surface temperatures. Given the here established relationship between tiny plankton and environmental variables, and their importance in the full plankton assemblage, we recommend that, alongside existing microplankton lifeforms, tiny plankton groups can be used as plankton lifeforms, either individually or in combination, to inform biodiversity indicators that meet policy obligations under the EU Marine Strategy Framework Directive (MSFD), (Oslo-Paris Convention) OSPAR strategies, and the UK Marine Strateg
Evolutionary and biological mechanisms underpinning chitin degradation in aquatic fungi
No full textFungal biology underpins major processes in ecosystems. The Chytridiomycota (chytrids) is a group of early-diverging fungi, many of which function in ecosystems as saprotrophs processing high molecular weight biopolymers, however the mechanisms underpinning chytrid saprotrophy are poorly understood. Genome sequences from representatives across the group and the use of model chytrids offers the potential to determine new insights into their evolution. In this study, we focused on the biology underpinning chitin saprotrophy, a common ecosystem function of aquatic chytrids. The genomes of chitinophilic chytrids have expanded inventories of glycoside hydrolase genes responsible for chitin processing, complemented with bacteria-like chitin-binding modules (CBMs) that are absent in other chytrids. In the model chitinophilic saprotroph Rhizoclosmatium globosum JEL800, the expanded repertoire of chitinase genes is diverse and almost half were detected as proteins in the secretome when grown with chitin. Predicted models of the secreted chitinases indicate a range of active site sizes and domain configurations. We propose that increased diversity of secreted chitinases is an adaptive strategy that facilitates chitin degradation in the complex heterologous organic matrix of the arthropod exoskeleton. Free swimming R. globosum JEL800 zoospores are chemotactic to the chitin monomer N-acetylglucosamine and accelerate zoospore development when grown with chitin. Our study sheds light on the underpinning biology and evolutionary mechanisms that have supported the saprotrophic niche expansion of some chytrids to utilise lucrative chitin-rich particles in aquatic ecosystems and is a demonstration of the adaptive capability of this successful fungal grou
The genome sequence of the Atlantic mackerel, Scomber scombrus Linnaeus, 1758.
No full textWe present a genome assembly from an individual Scomber scombrus (the Atlantic mackerel; Chordata; Actinopteri; Scombriformes; Scombridae). The genome sequence has a total length of 764.10 megabases. Most of the assembly is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.56 kilobases in lengt
Crossed wires: diatom phosphate sensing mechanisms coordinate nitrogen metabolism
No full textPhytoplankton can encounter dynamic changes in their environment including fluctuating nutrient supply, and therefore require survival mechanisms to compete for such growth-limiting resources. Diatoms, single-celled eukaryotic microalgae, are typically first responders when crucial macronutrients phosphorus (P) and nitrogen (N) enter the marine environment and therefore must have tightly regulated nutrient sensory systems. While nutrient starvation responses have been described, comparatively little is known about diatom nutrient sensing mechanisms. We previously identified that the model diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana use calcium (Ca2+) ions as a rapid intracellular signaling response following phosphate resupply. This response is evident only in phosphate deplete conditions, suggesting that it is coordinated in P-starved cells. Rapid increases in N uptake and assimilation pathways observed following phosphate resupply, indicate tight interplay between P and N signaling. To regulate such downstream changes, Ca2+ ions must bind to Ca2+ sensors following phosphate induced Ca2+ signals, yet this molecular machinery is unknown. Here, we describe our findings in relation to known diatom P starvation signaling mechanisms and discuss their implications in the context of environmental macronutrient metadata and in light of recent developments in the field. We also consider the importance of studying phytoplankton nutrient signaling systems in the face of future ocean condition
Effect of temperature, nutrients and growth rate on picophytoplankton cell size across the Atlantic Ocean
Get PDFThe cell size of picophytoplankton populations affects their ecology and biogeochemical role, but how
different environmental drivers control its variability is still not well understood. To gain insight into
the role of temperature and nutrient availability as determinants of picophytoplankton population
mean cell size, we carried out five microcosm experiments across the Atlantic Ocean (45°N-27°S) in
which surface plankton assemblages were incubated under all combinations of three temperatures (in
situ, 3 °C cooling and 3 °C warming) and two nutrient levels (unamended and addition of nitrogen and
phosphorus). The overall range of variability in cell volume was 5-fold for Prochlorococcus, 8-fold for
Synechococcus and 6-fold for the picoeukaryotes. We observed, in all the treatments and in the control,
a consistent trend toward larger mean cell sizes over time for both Prochlorococcus and Synechococcus,
which was likely the result of sample confinement. Changes in temperature and nutrient status alone
did not cause clear changes in cell size, relative to the control, but the combination of warming and
nutrient addition resulted in an increase in Prochlorococcus and Synechococcus cell size. The largest
increases in cell volume were associated with slow or negative population net growth rates. Our
results emphasize the importance of considering changes in biovolume to obtain accurate estimates
of picophytoplankton biomass and suggest that the inverse relationship between growth rate and
population mean cell size may be a general pattern in marine phytoplankto
Developing expert scientific consensus on the environmental and societal effects of marine artificial structures prior to decommissioning
Get PDFThousands of artificial (‘human-made’) structures are present in the marine environment, many at or approaching end-of-life and requiring urgent decisions regarding their decommissioning. No consensus has been reached on which decommissioning option(s) result in optimal environmental and societal outcomes, in part, owing to a paucity of evidence from real-world decommissioning case studies. To address this significant chal�lenge, we asked a worldwide panel of scientists to provide their expert opinion. They were asked to identify and
characterise the ecosystem effects of artificial structures in the sea, their causes and consequences, and to identify
which, if any, should be retained following decommissioning. Experts considered that most of the pressures driving ecological and societal effects from marine artificial structures (MAS) were of medium severity, occur frequently, and are dependent on spatial scale with local-scale effects of greater magnitude than regional effects. The duration of many effects following decommissioning were considered to be relatively short, in the order of days. Overall, environmental effects of structures were considered marginally undesirable, while societal effects marginally desirable. Experts therefore indicated that any decision to leave MAS in place at end-of-life to be more beneficial to society than the natural environment. However, some individual environmental effects were considered desirable and worthy of retention, especially in certain geographic locations, where structures can
support improved trophic linkages, increases in tourism, habitat provision, and population size, and provide
stability in population dynamics. The expert analysis consensus that the effects of MAS are both negative and positive for the environment and society, gives no strong support for policy change whether removal or retention is favoured until further empirical evidence is available to justify change to the status quo. The combination of desirable and undesirable effects associated with MAS present a significant challenge for policy- and decision�makers in their justification to implement decommissioning options. Decisions may need to be decided on a
case-by-case basis accounting for the trade-off in costs and benefits at a local level
Sheared turbulent flows and wake dynamics of an idled floating tidal turbine
No full textOcean energy extraction is on the rise. While tides are the most predictable amongst marine renewable resources, turbulent and complex flows still challenge reliable tidal stream energy extraction and there is also uncertainty in how devices change the natural environment. To ensure the long-term integrity of emergent floating tidal turbine technologies, advances in field measurements are required to capture multiscale, real-world flow interactions. Here we use aerial drones and acoustic profiling transects to quantify the site- and scale-dependent complexities of actual turbulent flows around an idled, utility-scale floating tidal turbine (20 m rotor diameter, D). The combined spatial resolution of our baseline measurements is sufficiently high to quantify sheared, turbulent inflow conditions (reversed shear profiles, turbulence intensity >20%, and turbulence length scales > 0.4D). We also detect downstream velocity deficits (approaching 20% at 4D) and trace the far-wake propagation using acoustic backscattering techniques in excess of 30D. Addressing the energy-environment nexus, our oceanographic lens on flow characterisation will help to validate multiscale flow physics around offshore energy platforms that have thus far only been simulate
A sustainable blue economy may not be possible in Tanzania without cutting emissions
Get PDFBalancing blue growth with the conservation of wild species and habitats is a key challenge for global ocean management. This is exacerbated in Global South nations, such as Tanzania, where climate-driven ocean change requires delicate marine spatial planning (MSP) trade-offs to ensure climate resilience of marine resources relied upon by coastal communities. Here, we identified challenges and opportunities that climate change presents to the near-term spatial management of Tanzania's artisanal fishing sector, marine protected areas and seaweed farming. Specifically, spatial meta-analysis of climate modelling for the region was carried out to estimate the natural distribution of climate resilience in the marine resources that support these socially important sectors. We estimated changes within the next 20 and 40 years, using modelling projections forced under global emissions trajectories, as well as a wealth of GIS and habitat suitability data derived from globally distributed programmes. Multi-decadal analyses indicated that long-term climate change trends and extreme weather present important challenges to the activity of these sectors, locally and regionally. Only in few instances did we identify areas exhibiting climate resilience and opportunities for sectoral expansion. Including these climate change refugia and bright spots in effective ocean management strategies may serve as nature-based solutions: promoting adaptive capacity in some of Tanzania's most vulnerable economic sectors; creating wage-gaining opportunities that promote gender parity; and delivering some economic benefits of a thriving ocean where possible. Without curbs in global emissions, however, a bleak future may emerge for globally valuable biodiversity hosted in Tanzania, and for its coastal communities, despite the expansion of protected areas or curbs in other pressures. Growing a sustainable ocean economy in this part of the Global South remains a substantial challenge without global decarbonization