Journal of Tropical Biodiversity and Biotechnology
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Bioactivity and Metabolites Compounds of Medicinal Plants Endophytic Fungi in Indonesia
Full text linkIndonesia is rich in diversity of medicinal plants, vital in traditional medicine and the pharmaceutical industry. However, overharvesting, along with population growth, land use changes, deforestation, and climate change, endanger these plants. This review investigates the potential of endophytic endosymbiont as an alternative. These endosymbionts can synthesise bioactive compounds similar to those found in medicinal plants. This study compiled data from various sources on endophytic fungi and their bioactivity. The review aims to categorise Indonesian medicinal plants, to identify their associated endophytic fungi from different plant parts, and to assess their bioactivity. The results revealed numerous medicinal plant families and a variety of endophytic fungi isolated from fruits, leaves, twigs, bark, roots, and rhizomes. These fungi exhibited bioactivities, including antioxidant, anticancer, antidiabetic, and antimicrobial effects, with metabolites such as alkaloids, flavonoids, peptides, phenols, polyketides, quinones, steroids, and terpenoids. Fusarium and Colletotrichum were the most common endophytic fungi found. Notably, the biological activity was consistent among endophytic fungi from various host organs, but variations were observed according to the host's geographical origin. This suggests that Indonesia's diverse geography influences metabolite production and activity. However, the same host plant may harbour different species in distinct organs. These findings indicate that endophytic fungi within medicinal plants represent a promising source of bioactive compounds for future Indonesian medicine production. Future research should explore metabolite compounds and bioactivity across different geographical regions.
Microbial Count and AvBD10 Expressions in Ovaries and Oviducts of Kampung Unggul Balitbangtan (KUB)-1 Chickens Following Intravaginally CpG-ODN and S. Enteritidis
Full text linkIndonesia boasts diverse native chickens (Gallus gallus domesticus) known for more disease resistance in comparison to broiler chicken, and Kampung Unggul Balitbangtan (KUB)-1 is designated as Indonesia's superior breed. Salmonella Enteritidis (SE) is associated with salmonellosis, a foodborne illness that can be transmitted by transovarial, wherein colonisation in the oviduct ascends to the ovaries. However, studies mimicking transovarial salmonellosis via intravaginal treatment of chicken have been limited. Meanwhile, Cytosine-phosphate-guanine oligodeoxynucleotide (CpG-ODN) stimulation has been known to induce avian β-defensins (AvBDs). This in vivo study aimed to determine the effects of intravaginal CpG-ODN treatment and SE challenged on microbial count and AvBD10 expression regarding the potential of intravaginally CpG-ODN to enhance innate immunity as an alternative approach against transovarial Salmonellosis. A total of 39 KUB-1 chickens were divided into four groups: T1 (CpG-ODN treatment), T2 (SE treatment), T3 (CpG-ODN treatment + challenged with SE), and C (Control). Observation was carried out from day 1 to day 4 post-intravaginal (PI). We found a significant increase in ovarian microbial count (p≤0.05). Notably, ovaries and oviducts remained uncontaminated post-SE challenge. Intravaginal CpG-ODN treatment significantly upregulated AvBD10 in both ovaries (p=0.016) and oviducts (p=0.023). Therefore, KUB-1 chickens exhibit SE immunity, and intravaginal CpG-ODN administration holds promise for preventing transovarial Salmonellosis in laying hens.
Diversity of Orchid species in the Tilu Mountains Region of Indonesia and the Potential for Phytochemistry
Full text linkOrchids are one of the largest and globally distributed plant families. Indonesia has the most types of orchids, estimated around 20% from the total species across the world. Mainly orchids used as an ornamental plant. This research aimed to elucidate another potential of orchids as possibly for herbal medicine plant. The potential of orchids as herbal medicine has been known for a long time, but there is lack of well-documented research. The research method used in this research is exploration on predetermined research sites that were conducted in Mount Tilu, West Java on 2022. Observation data of orchids were collected on the sites and the analysis was carried out in a qualitative descriptive approach by describing the data from the research results and comparisons were made through a literature review. Based on the research results, we found about 31 species from 28 genera consisting of 24 epiphytic orchids and 7 terrestrial orchids in the Mount Tilu Kuningan area, West Java. There are 4 endemic species categorised in Java; Chilochista javanica, Crepidium koordesii, Crepidium junghuhnii, and Taeniophyllum biocellatum
Effect of Different Concentrations and Combinations of Benzyl Aminopurine and Indole-3-Butyric Acid on Micropropagation of Vanilla Planifolia
Full text linkMicropropagation of explants in vitro has potency to address propagule demands for promoting large-scale vanilla production. Plant growth regulators (i.e., cytokinin, auxin) are necessary for the plant micropropagation success. Objective of this study is to determine the shoot multiplication and root development of Vanilla planifolia under the influence of different concentrations and combinations of BA and IBA for micropropagation. Sixty stem nodal segments of Vanilla planifolia were cultured on MS medium supplemented with IBA (0, 0.5, or 2.0 mg/L) and combined with BA (0, 0.5, 1.0, or 2.0 mg/L). Shoot multiplication and root induction were measured after 60 days of culture. The results show that the MS medium with 1 mg/L IBA hindered shoot growth, while the medium containing 1 mg/L BA yielded the highest number or weight of shoots per explant. For the root development, supplementing the medium with 0.5 mg/L or 1 mg/L IBA improved root length or number of roots per explant, respectively. This research establishes a valuable approach for vanilla micropropagation by utilising low concentrations of plant growth regulators and a rapid protocol. This paves the way for significant advancements in large-scale commercial production
Fern Species-Area Relationship in Urban Anthropogenic Islands in Slawi, Tegal, Central Java
Full text linkIn anthropogenic islands as urban parks, the fern species richness and composition may be determined ecologically by the quality of habitat, including area greenness, or biogeographically by area size. As the development of the theory of island biogeography also includes man-made parks, it is feasible to test whether area-species relationship applies in these urban parks, and is more pronouncedly evident compared to another ecological factor, such as NDVI. Total species number and composition of 8 urban parks in a kecamatan in Tegal Regency were collected and arranged in clustering methods to understand the similarity between parks. The similarity analysis result is important for the management of the parks in Slawi. The species richness data is subsequently tested using Pearson correlation and regression against NDVI and area sizes. The relation between NDVI and species richness is non-significant (p=0.058), while area size and species richness is significant (p=0.003). This signifies that the urban fern species richness is determined by area as biogeographical factor, compared to NDVI as ecological factor. This result is important for the purpose of designing and managing urban parks as evidently size is important in the effort of attracting native biodiversity into urban parks and in turn enhancing the well-being of urban population.
Mining GATA Transcription Factor Encoding Genes in The Cocoa Tree (Theobroma cacao L.) Suggests Their Potential Roles in Embryo Development and Biotic Stress Response
Full text linkGATA transcription factors (TFs) are widely recognized as significant regulators, characterized by a DNA-binding domain that consists of a type IV zinc finger motif. This TF family has been widely investigated in numerous higher plant species. The purpose of the present work was to comprehensively analyze the GATA TF in cocoa plant (Theobroma cacao L.) by using various bioinformatics tools. As a result, a total of 24 members of the GATA TFs have been identified and annotated in the assembly of the cocoa plant. According to phylogenetic analysis, these TcGATA proteins were classified into four distinct groups, including groups I (10 members), II (seven members), III (five members), and IV (two members). Next, our investigation indicated that the TcGATA proteins in different groups exhibited a high variation in their physic-chemical features due to their different protein lengths, gene structures, and conserved motif distributions, whereas the TcGATA proteins in the same clade might share the common conserved motifs. Additionally, the gene duplication of the TcGATA genes in the cocoa plant was also investigated. Of our interest, the relative expression levels of the TcGATA genes were investigated according to available transcriptome databases. The results exhibited differential expression patterns of all TcGATA genes in various developmental stages of zygotic and somatic embryogenesis, indicating that these TcGATA genes divergently function during various developmental stages of the zygotic and somatic embryos. Moreover, TcGATA genes were differently expressed under Phytophthora megakarya treatment across different points of treatment and cocoa varieties. To sum up, our findings could provide a basis for a further deep understanding of the GATAs in the cocoa plant.
Spatial Modelling Habitat Suitability of Javan Langur (Trachypithecus auratus É. Geoffroy Saint-Hilaire, 1812) in Bromo Tengger Semeru National Park (TNBTS), East Java
Full text linkJavan Langur (T. auratus) is well-known as one of endemic primates from Java, Bali and Lombok Islands. The activities of land clearing, vegetation conversing, wild hunting and illegal wildlife trading are the main causes of the extinction of the Javan Langur. It can be used as an important issue for conservation action by making prediction maps of suitable habitat potential, especially for species facing a high risk of extinction in the wild. We were documenting an information about potential habitat for Javan langur using spatial suitability model in order to provide rigorous information as the basis for conservation activities of Javan langur in TNBTS. We used Landsat-8 TM image and geospatial data to support analysis as a representative of environmental parameters in order to develop the habitat model. We were using maximum entropy (MaxEnt) algorithm refers to Javan langur presence or absence. The results showed that the suitability of the Javan langur habitat in TNBTS has an excellent model accuracy level with an AUC (Area Under the Receiver Operating Characteristics) value of 0.964 and a standard deviation of 0.961. Parameters with the highest response values here are elevation, NDVI (Normalised Difference Vegetation Index) and temperatures.
Herpetofauna and Their Potential Threats in Karimata Island, Indonesia
Full text linkKarimata Island is an island about 100 km west of Borneo, causes geographical isolation and generally always shows an impact on the diversity of animal communities that are less, one of the communities affected is herpetofauna. Herpetofauna is very important in an ecosystem so it is necessary to conduct a survey. The survey was conducted from April 1 to April 7, 2023 in Betok Jaya Village, Karimata Island which was divided in 3 observation areas based on habitat type using the Visual Encounter Survey method. Herpetofauna found consisted in 22 species divided into 5 species of amphibians and 17 species of reptiles with a total of 43 individuals. Herpetofauna located adjacent to human areas is vulnerable to various disturbances such as maritime transportation activities, household waste pollution and land clearing, which can be a threat to the herpetofauna community of Karimata Island.
Ecological Study of Bidens pilosa in Bandung, West Java, Indonesia
Full text linkBidens pilosa has been widely distributed from tropical to temperate regions and is often reported as a weed in agriculture. It readily thrives in various environments, naturally spreading to open areas and artificial ecosystems, establishing new populations, emphasising the need for ecological studies to prevent its invasive potential. In this study, we focused on population study of B. pilosa and its distribution in Bandung as urban area. Survey was conducted using 1x1 m quadrate plots in eight locations (24 plots). Individual number of B. pilosa, the number of flowers in each individual, coordinates, and altitude of each plot were recorded to describe population structure and map this population in Bandung. Air temperature (°C), humidity (%), light intensity (Lux), and soil water content (%) were measured. Individual number and environmental condition are analysed using cluster analysis and PCA, then mapped using IDW (Inverse Distance Weighting). The highest population in AR (652 ind), followed by CG (626 ind), TR (253 ind), PA (135 ind), CW (78 ind), NR (39 ind), PU (28 ind), and PR (20 ind). On average, each B. pilosa individual produces 61 inflorescences, indicating a mature population with all developmental stages present across all locations. Ordination plots shows that B. pilosa has wide range of environmental condition from open to shade area with various environmental condition. Open areas, settlements, and agriculture host dense B. pilosa populations, and its biological traits suggest it may become invasive without proper control.
Spongia officinalis -Associated Pseudomonas fluorescens as a Reservoir of Bioactive Compounds: A Novel Source of Natural Anticancer Compounds
Full text linkMarine sponges are an important source of chemical variety and a repository of biodiversity. In this study, the microbial communities found in the marine sponge Spongia officinalis that was taken from the Kanyakumari coast in India were explored. We identified, characterized, and evaluated the bioactive potential of the sponge-associated bacteria. A total of 12 bacterial isolates were obtained, primarily consisting of gram-positive rods and some gram-negative rods and cocci. These bacterial isolates showed a variety of bioactive substances when their secondary metabolites were extracted, including phenols, flavonoids, alkaloids, saponins, terpenoids, and steroids. These chemical compounds are well-known for their numerous biological activity and health benefits. The antioxidant and anticancer effects of these metabolites were also investigated. Isolate 6 showed significant antioxidant activity, suggesting it may be able to treat cancer. With an IC50 value of 55.32 g/ml, this isolate also displayed impressive anticancer activity against HeLa cells. The screened isolate was identified as Pseudomonas fluorescens strain ATCC 13525 using 16S rRNA sequencing. This discovery emphasizes the importance of bacteria associated with marine sponges as a source of bioactive compounds with medicinal potential. The conclusion of this research highlights the diverse microbial communities found in marine sponges and their potential for use in biotechnology and medication development. Pseudomonas fluorescens was found to be a prolific generator of bioactive byproducts, including strong antioxidants and anticancer agents, which emphasizes the significance of additional marine resource exploitation for pharmacologically relevant chemicals.