Alfred Wegener Institute for Polar and Marine Research
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The Mixoplankton Database (MDB): Diversity of photo‐phago‐trophic plankton in form, function, and distribution across the global ocean
Get PDFProtist plankton are major members of open-water marine food webs. Traditionally divided between phototrophic phytoplankton and phagotrophic zooplankton, recent research shows many actually combine phototrophy and phagotrophy in the one cell; these protists are the “mixoplankton.” Under the mixoplankton paradigm, “phytoplankton” are incapable of phagotrophy (diatoms being exemplars), while “zooplankton” are incapable of phototrophy. This revision restructures marine food webs, from regional to global levels. Here, we present the first comprehensive database of marine mixoplankton, bringing together extant knowledge of the identity, allometry, physiology, and trophic interactivity of these organisms. This mixoplankton database (MDB) will aid researchers that confront difficulties in characterizing life traits of protist plankton, and it will benefit modelers needing to better appreciate ecology of these organisms with their complex functional and allometric predator–prey interactions. The MDB also identifies knowledge gaps, including the need to better understand, for different mixoplankton functional types, sources of nutrition (use of nitrate, prey types, and nutritional states), and to obtain vital rates (e.g. growth, photosynthesis, ingestion, factors affecting photo’ vs. phago’ -trophy). It is now possible to revisit and re-classify protistan “phytoplankton” and “zooplankton” in extant databases of plankton life forms so as to clarify their roles in marine ecosystems
Mucus-Trap-Assisted Feeding Is a Common Strategy of the Small Mixoplanktonic Prorocentrum pervagatum and P. cordatum (Prorocentrales, Dinophyceae)
Get PDFProrocentrum comprises a diverse group of bloom-forming dinophytes with a worldwide distribution. Although photosynthetic, mixoplanktonic phagotrophy has also been described. Recently, the small P. cf. balticum was shown to use a remarkable feeding strategy by crafting globular mucus traps to capture and immobilize potential prey. Here we present evidence showing that two additional related species, the recently described P. pervagatum and the cosmopolitan bloom-forming P. cordatum, also produce large (80–120 µm) mucus traps supporting their mixoplanktonic activity. Prey are captured within the traps either through passive entanglement upon contact with the outside surface, or through active water movement created by rotating Prorocentrum cells eddying particles to the inside surface where trapped live prey cells became immobilized. Entrapment in mucus assisted deployment into the prey of a peduncle extruded from the apical area of the Prorocentrum cell. Phagotrophy by P. pervagatum supported faster growth compared to unfed controls and time series quantification of food vacuoles revealed ingestion rates of ca. 10–12 Teleaulax prey cells day−1. Model calculations show clear advantages of deploying a mucus trap for increasing prey encounter rates. This study demonstrates that the large size and immobilization properties of mucus traps successfully increase the availability of prey for small Prorocentrum species, whose peduncle feeding mode impedes consumption of actively moving prey, and that this strategy is common among certain clades of small planktonic Prorocentrum species
Metabolic independence drives gut microbial colonization and resilience in health and disease
Get PDFBackground: Changes in microbial community composition as a function of human health and disease states have sparked remarkable interest in the human gut microbiome. However, establishing reproducible insights into the determinants of microbial succession in disease has been a formidable challenge. Results: Here we use fecal microbiota transplantation (FMT) as an in natura experimental model to investigate the association between metabolic independence and resilience in stressed gut environments. Our genome-resolved metagenomics survey suggests that FMT serves as an environmental filter that favors populations with higher metabolic independence, the genomes of which encode complete metabolic modules to synthesize critical metabolites, including amino acids, nucleotides, and vitamins. Interestingly, we observe higher completion of the same biosynthetic pathways in microbes enriched in IBD patients. Conclusions: These observations suggest a general mechanism that underlies changes in diversity in perturbed gut environments and reveal taxon-independent markers of “dysbiosis” that may explain why widespread yet typically low-abundance members of healthy gut microbiomes can dominate under inflammatory conditions without any causal association with disease
Author Correction: GLORIA - A globally representative hyperspectral in situ dataset for optical sensing of water quality
Get PDFAn author of the paper was omitted in the original version (Ted Conroy, University of Waikato, New Zealand). This has been corrected in the pdf and HTML versions of the paper, and the associated metadata
Sedimentary ancient DNA of rotifers reveals responses to 200 years of climate change in two Kenyan crater lakes
No full textSedimentary ancient DNA (sedaDNA) has proven to be a useful tool for palaeoenvironmental studies, but only a handful of studies exist so far for tropical regions. In this study we used sedaDNA to study the temporal succession of Brachionus spp. rotifer mitochondrial DNA haplotypes using two sediment cores from two climatically different alkaline-saline crater lakes from the Kenyan Rift Valley. Data were retrieved from a sediment core (dating back to AD 1800) from Lake Kageinya, located in the remote, hot and hyper-arid Suguta Valley. sedaDNA was used to study the temporal succession of mitochondrial DNA haplotypes of Brachionus spp. rotifers. The results were compared to previously published data from Lake Sonachi, a well-studied lake in the humid and colder mountainous region of Kenya near the town of Naivasha, now supported by a 210Pb age chronology. Both records extend back before the onset of substantial anthropogenic impact in these regions. The results revealed that climate—rather than anthropogenic impact—was most strongly correlated with haplotype changes in both lakes. During prolonged dry periods (such as from AD 1910 to the late AD 1960s), certain haplotypes persisted. Sudden changes and the emergence of alter native haplotypes were observed when climate became more humid or during episodes of highly variable climate (before AD 1910 and from AD 1960s onwards). Progressive changes in prevailing haplotypes during periods with variable climate could reflect local adaptation and/or be the result of immigration of new haplotypes after the eradication of previous populations during extreme environmental conditions (high temperatures, UV irradiation, pH and salinity). The results indicate that, despite adverse chemical conditions, sedaDNA in tropical lake sediments is preserved for at least a few hundred years. Therefore, its analysis provides a useful complementary palaeoenvironmental proxy for palaeolimnological reconstructions and novel insights on changes in rotifer populations through time
Exploring shoulder season greenhouse gas production along a permafrost thaw transect in sub-arctic Finnish Palsas
Get PDFThe future of terrestrial carbon found in permafrost is not yet well understood, but this soil carbon may be a potential significant contributor to positive-feedback loop of climatic warming. In the (sub)arctic, the annual freeze-thaw cycles and thick peat accumulation harbor ideal conditions for palsa formation. Although, a recent study at our site in Arctic Lapland found that the area of the carbon-rich palsa mounds have already decreased by -77 % to -90 % since 1960.
Here, we investigate potential greenhouse gas (CO2, CH4, N2O) production from a palsa sampled along a transect with 60+ years of documented thaw. During the annual cycle of freeze-thaw, one of the largest unknowns in the life cycle of a palsa mound is the biogeochemical cycles during the shoulder season. This transition time between growing, and non-growing seasons that have previously been assumed to be times of relative dormancy for GHG flux in high-latitude wetlands. However, recent studies find that there is in fact a significant amount of GHG flux during this time.
We aim to isolate shoulder season variables (increased N from plant senescence, temperature change) and explore how they each affect the potential CO2 and CH4 production using ex-situ incubations, coupled with microbial community cell counts sampled in tandem. Here, we test whether N addendums increase the GHG, as n-poor habitat has been shown to respond with increased microbial activity to the release of this metabolic bottleneck. In addition to the N-treatments, the samples will also be separated into three incubation temperature groups (4 , 15, 20C) to be able to link increasing temperatures with the N response. Overall, we aim to fill knowledge gaps on these habitats response to changing climatic conditions, and use our findings to better earth system models permafrost carbon predictions
An Overview of Extreme Years in Quercus sp. Tree Ring Records from the Northern Moldavian Plateau
Get PDFIn this study, we made use of a regional oak tree-ring network from six stands that cover the northern Moldavian Plateau (eastern Europe) to analyze how different tree ring parameters (i.e., early wood tree-ring width, late wood tree-ring width, and total tree-ring width) of Quercus sp. are influenced by the occurrence of extreme climatic events (e.g., long-lasting drought events). In order to explore the influence of extreme hydroclimatic events on tree ring width, we have selected each of the six most extreme positive and negative years of tree growth and addressed the seasonal cycle of tree growth in comparison with the main climatic parameters, then evaluated both the current and lagged consequences of extreme hydroclimatic events on tree ring width and the capacity of trees to recover. Our results indicate that the variability of oak tree ring width from the Moldavian Plateau is mainly influenced by the availability of water resources, and that an important limiting growth factor for Quercus sp. is the occurrence of long-lasting drought events, e.g., at least two years in a row with severe drought conditions
PANGAEA - Data Publisher for Earth & Environmental Science
Get PDFThe information system PANGAEA provides targeted support for research data management as well as long-term data archiving and publication. PANGAEA is operated as an open access library for archiving, publishing, and distributing georeferenced data from earth and environmental sciences. It focuses on observational and experimental data. Citability, comprehensive metadata descriptions, interoperability of data and metadata, a high degree of structural and semantic harmonization of the data inventory as well as the commitment of the hosting institutions ensures the long-term usability of archived data. PANGAEA is a pioneer of FAIR and open data infrastructures to enable data intensive science and an integral component of national and international science and technology activities. This paper provides an overview of the recent organisational, structural, and technological advancements in developing and operating the information system
Thermodynamic and kinematic drivers of atmospheric boundary layer stability in the central Arctic during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC)
Get PDFObservations collected during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) provide a detailed description of the impact of thermodynamic and kinematic forcings on atmospheric boundary layer (ABL) stability in the central Arctic. This study reveals that the Arctic ABL is stable and near-neutral with similar frequencies, and strong stability is the most persistent of all stability regimes. MOSAiC radiosonde observations, in conjunction with observations from additional measurement platforms, including a 10 m meteorological tower, ceilometer, microwave radiometer, and radiation station, provide insight into the relationships between atmospheric stability and various atmospheric thermodynamic and kinematic forcings of ABL turbulence and how these relationships differ by season. We found that stronger stability largely occurs in low-wind (i.e., wind speeds are slow), low-radiation (i.e., surface radiative fluxes are minimal) environments; a very shallow mixed ABL forms in low-wind, high-radiation environments; weak stability occurs in high-wind, moderate-radiation environments; and a near-neutral ABL forms in high-wind, high-radiation environments. Surface pressure (a proxy for synoptic staging) partially explains the observed wind speeds for different stability regimes. Cloud frequency and atmospheric moisture contribute to the observed surface radiation budget. Unique to summer, stronger stability may also form when moist air is advected from over the warmer open ocean to over the colder sea ice surface, which decouples the colder near-surface atmosphere from the advected layer, and is identifiable through observations of fog and atmospheric moisture. Copyright
Derivation and compilation of lower atmospheric properties relating to temperature, wind, stability, moisture, and surface radiation budget over the central Arctic sea ice during MOSAiC
Get PDFAbstract. Atmospheric measurements taken over the span of an entire year between October 2019 and September 2020 during the icebreaker-based Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition provide insight into processes acting in the Arctic atmosphere. Through the merging of disparate, yet complementary in situ observations, we can derive information about these thermodynamic and kinematic processes with great detail. This paper describes methods used to create a lower atmospheric properties dataset containing information on several key features relating to the central Arctic atmospheric boundary layer, including properties of temperature inversions, low-level jets, near-surface meteorological conditions, cloud cover, and the surface radiation budget. The lower atmospheric properties dataset was developed using observations from radiosondes launched at least four times per day, a 10 m meteorological tower and radiation station deployed on the sea ice near the Research Vessel Polarstern, and a ceilometer located on the deck of the Polarstern. This lower atmospheric properties dataset, which can be found at *insert DOI when published*, contains metrics which fall into the overarching categories of temperature, wind, stability, clouds, and radiation at the time of each radiosonde launch. The purpose of the lower atmospheric properties dataset is to provide a consistent description of general atmospheric boundary layer conditions throughout the MOSAiC year which can aid in research applications with the overall goal of gaining a greater understanding of the atmospheric processes governing the central Arctic and how they may contribute to future climate change.
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