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Dogslife puppy microbiome study (2017-2019)
Al puppies were recruited via Dogslife: a cohort of Kennel Club registered Labrador Retrievers enrolled in an internet-based questionnaire in the UK. Recruitment to Dogslife began in 2010 and continues into 2023. After registration, owners are prompted to complete regular online questionnaires on the Dogslife website about their dog’s morphology, lifestyle and illness incidences. The cohort profile is described elsewhere [1]. This study was approved by the University of Edinburgh Veterinary Ethical Review Committee (Ref: 7.5.09) and Human Ethical Review Committee (Ref: HERC_161_17). Data for this study were collected from a targeted sub-population of Dogslife puppy owners. Dogslife members that registered between the 1st of October 2017 and the 20th of June 2018 were considered eligible if they had given consent to be contacted and their dogs were younger than 114 days old and were healthy. Owners of eligible puppies were contacted by telephone and/or email and those who agreed to participate were asked to return faecal samples and specialised digestive health questionnaires. Samples were collected from puppies at three to four, seven and 12 months of age and their data was combined with regular Dogslife questionnaires. 16S ribosomal RNA (rRNA) gene sequencing data was produced from dogs’ faecal samples. Sequencing data were also produced from negative controls included throughout laboratory processes and from mock community samples included as PCR amplification. Certain canine samples were also repeated to assess reproducibility. Therefore, this dataset contains 16S rRNA paired end reads from 242 samples and the metadata for these is provided. Additionally, data on the recruitment and sampling processes of the study are included. The dataset is related to the upcoming publication "A longitudinal microbiome study of Labrador Retriever puppies" b y Charlotte S C Woolley, Adrian Muwonge, B Mark Bronsvoort, Jeffrey J Schoenebeck, Ian G Handel, Katie Chamberlain, Erica Rose, Dylan N Clements. Submitted to Animal Microbiome.• “DOGSLIFE_MANIFEST.txt”: A .txt manifest file containing the file locations of the raw 16S rRNA paired end reads from 242 samples, used for the demultiplexing process.
• “classified_taxonomy.qza” : Contains the classified taxonomy table generated by QIIME2 analyses.
• “rooted-tree.qza": Contains the phylogenetic tree generated by QIIME2 analyses.
• “denoised_table.qza”: Contains the denoised ASV/OTU table generated by QIIME2 analyses.
• “microbiome_study_recruitment_data.csv": A .csv file containing 6 data columns relating to the potential recruitment of 363 puppies into the study. Please refer to the data dictionary file “data_dictionary.xlsx” and sheet “recruitment_data” for more information. Please refer to the file “data_dictionary_microbiome_study_recruitment_data.csv” for more information.
• “microbiome_study_sample_collection_data.csv": A .csv file containing 6 data columns relating to sample collection information for 249 attempted samples in the study. Please refer to the data dictionary file “data_dictionary.xlsx” and sheet “sample_collection_data” for more information. Please refer to the file “data_dictionary_microbiome_study_sample_collection_data.csv” for more information.
• “microbiome_study_cleaned_metadata.csv” and “microbiome_study_cleaned_metadata.txt” are .csv and .txt files containing 38 cleaned data columns relating to sample information and demographic, environmental and health information about dogs in the study. Please note that information publicly available from the Office for National Statistics [2] was used to classify two variables, but this data is not included directly. Please refer to the file “data_dictionary_microbiome_study_cleaned_metadata.csv” for more information.
• “data_dictionary_microbiome_study_recruitment_data.csv”, “data_dictionary_microbiome_study_sample_collection_data.csv" and “data_dictionary_microbiome_study_cleaned_metadata.csv” are data dictionaries which describe each column of the datasets, the format of the data, the data source, cleaning and coding of the data, missing data and any relevant questions from the digestive health questionnaire and the Dogslife questionnaire that data has been derived from.
• “raw_16_data.zip“: A zipped folder containing all .fastq files are the original 16S rRNA paired end reads from 242 samples
Tower Blocks UK: Canterbury City Kings Road, Phases I and III, s5-21.jpg
Multi-storey block details: I: one 7-storey block containing 27 dwellings; III: one 9-storey block containing 36 dwellings; Multi-storey block name(s): I: Elizabeth Court; III: Margaret Court; Image detail: View of Margaret Court with Elizabeth Court in background Original Commissioning Authority: Herne Bay Urban District Council; Image taken: 1988;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built
Tower Blocks UK: Ealing London South Acton Extension Phase 2, l10-11.jpg
Multi-storey block details: three 11-storey blocks containing 193 dwellings; Multi-storey block name(s): Frampton Court; Barrington Court; Arlington Court; Image detail: View of 11-storey blocks Original Commissioning Authority: Ealing London Borough Council; Image taken: 1988;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built
Tower Blocks UK: North Lanarkshire Woodside, cl1-36.jpg
Multi-storey block details: two 15-storey blocks containing 170 dwellings; Multi-storey block name(s): Millbrae Court; Glen Court; Image detail: View of Glen Court and Millbrae Court Original Commissioning Authority: Coatbridge Burgh Council; Image taken: 1983;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built
Tower Blocks UK: Tower Hamlets London Columbia Square, l14-16.jpg
Multi-storey block details: one 20-storey block containing 76 dwellings; Multi-storey block name(s): Sivill House; Image detail: Sivill House in background and Dorset Estate in foreground from Diss Street/Stamp Street Original Commissioning Authority: Bethnal Green Metropolitan Borough Council; Image taken: 1988;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built
Tower Blocks UK: Belfast City Area F1 Cullingtree Redevelopment Area, Belfast: Phases IB and Extension, Phases II-IV and St Peter's Precinct , ni2-03.jpg
Multi-storey block details: IB: two 7-storey blocks containing 93 dwellings; one 8-storey block containing 123 dwellings; II-IV: three 8-storey blocks containing 222 dwellings; five 7-storey blocks containing 225 dwellings; one 6-storey block containing 36 dwellings; SPP: four 6-storey blocks containing 96 dwellings; Multi-storey block name(s): IB: Whitehall; St Brendans; Gilford; II-IV: Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; SPP: Unknown; Unknown; Unknown; Unknown; Image detail: View of 7-storey block in Cullingtree Original Commissioning Authority: Northern Ireland Housing Trust; Image taken: 1988;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built
Tower Blocks UK: Kingston Upon Hull City Bransholme, Area A3, n23-13.jpg
Multi-storey block details: eighteen 6-storey blocks containing 627 dwellings; Multi-storey block name(s): Westray House; Walney House; Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; Unknown; Skomer House; Ronaldsay House; Heston House; Ardwall House; 22-33 Anglesey House; 1-9 Anglesey House; Image detail: View of 6-storey blocks in Bransholme Original Commissioning Authority: Kingston Upon Hull County Borough Council; Image taken: 1984;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built
Tower Blocks UK: Westminster City Ebury Bridge Estate Extension, l52-29.jpg
Multi-storey block details: one 9-storey block containing 56 dwellings; Multi-storey block name(s): Edgson House; Image detail: View of Edgson House with 14-storey point blocks (Chelsea Barracks) in background Original Commissioning Authority: Westminster City Council; Image taken: 1988;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built
Tower Blocks UK: Renfrewshire George Street and Canal Street, cl2-54.jpg
Multi-storey block details: one 15-storey block containing 56 dwellings; Multi-storey block name(s): George Court; Image detail: View of George Court Original Commissioning Authority: Paisley Burgh Council; Image taken: 1983;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built
Tower Blocks UK: Newham London North Woolwich redevelopment, l33-20.jpg
Multi-storey block details: two 8-storey blocks containing 64 dwellings; three 8-storey blocks containing 96 dwellings; Multi-storey block name(s): Shaw House; Glen House; Saville House; Brocklebank House; Albion House; Image detail: View of 8-storey blocks on Woodman Street with Shaw House in foreground Original Commissioning Authority: East Ham County Borough Council; Image taken: 1988;Context: Tower Block UK is a project supported by the Heritage Lottery Fund, bringing together public engagement and an openly-licensed image archive in an attempt to emphasise the social and architectural importance of tower blocks, and to frame multi-storey social housing as a coherent and accessible nationwide heritage. The Tower Block UK image archive is a searchable database of around 4,000 images of every multi-storey social housing development built in the UK. The photographs were largely taken in the 1980s by Miles Glendinning and are made available here for public use. As many of the blocks documented and photographed have since been demolished, the archive functions in part as a repository of information on an important aspect of UK heritage that is now vanishing. The archive itself catalogues multi-storey blocks as part of the developments within which they were initially commissioned and built. It gives details of notable dates, such as when local authorities approved the developments and when construction began or finished. Alongside this, the archive provides information on the local authorities, architects, and other agents involved in the processes of commissioning, designing, and constructing mass social housing. While the most historically 'accurate' identification labels in the database are the original overall development or project names, the archive also contains details of the individual blocks built