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A blueprint for the estimation of seagrass carbon stock using remote sensing-enabled proxies
Get PDFSeagrass ecosystems sequester carbon at disproportionately high rates compared to terrestrial ecosystems and represent a powerful potential contributor to climate change mitigation and adaptation projects. However, at a local scale, rich heterogeneity in seagrass ecosystems may lead to variability in carbon sequestration. Differences in carbon sequestration rates, both within and between seagrass meadows, are related to a wide range of interrelated biophysical and environmental variables that are difficult to measure holistically using traditional field surveys. Improved methods for producing robust, spatially explicit estimates of seagrass carbon storage across large areas would be highly valuable, but must capture complex biophysical heterogeneity and variability to be accurate and useful. Here, we review the current and emerging literature on biophysical processes which shape carbon storage in seagrass beds, alongside studies that map seagrass characteristics using satellite remote sensing data, to create a blueprint for the development of remote sensing-enabled proxies for seagrass carbon stock and sequestration. Applications of satellite remote sensing included measuring seagrass meadow extent, estimating above-ground biomass, mapping species composition, quantifying patchiness and patch connectivity, determining broader landscape environmental contexts, and characterising seagrass life cycles. All of these characteristics may contribute to variability in seagrass carbon storage. As such, remote sensing methods are uniquely placed to enable proxy-based estimates of seagrass carbon stock by capturing their biophysical characteristics, in addition to the spatiotemporal heterogeneity and variability of these characteristics. Though the outlined approach is complex, it is suitable for accurately and efficiently producing a full picture of seagrass carbon stock. This review has drawn links between the processes of seagrass carbon sequestration and the capabilities of remote sensing to detect and characterise these processes. These links will facilitate the development of remote sensing-enabled proxies and support spatially explicit estimates of carbon stock, ensuring climate change mitigation and adaptation projects involving seagrass are accounted for with increased accuracy and reliability
Genome-wide association and Meta-analysis of age at onset in Parkinson Disease
Get PDFBackground and Objectives Considerable heterogeneity exists in the literature concerning genetic determinants of the age at onset (AAO) of Parkinson disease (PD), which could be attributed to a lack of well-powered replication cohorts. The previous largest genome-wide association studies (GWAS) identified SNCA and TMEM175 loci on chromosome (Chr) 4 with a significant influence on the AAO of PD; these have not been independently replicated. This study aims to conduct a meta-analysis of GWAS of PD AAO and validate previously observed findings in worldwide populations.
Methods A meta-analysis was performed on PD AAO GWAS of 30 populations of predominantly European ancestry from the Comprehensive Unbiased Risk Factor Assessment for Genetics and Environment in Parkinson's Disease (COURAGE-PD) Consortium. This was followed by combining our study with the largest publicly available European ancestry dataset compiled by the International Parkinson Disease Genomics Consortium (IPDGC).
Results The COURAGE-PD Consortium included a cohort of 8,535 patients with PD (91.9%: Europeans and 9.1%: East Asians). The average AAO in the COURAGE-PD dataset was 58.9 years (SD = 11.6), with an underrepresentation of females (40.2%). The heritability estimate for AAO in COURAGE-PD was 0.083 (SE = 0.057). None of the loci reached genome-wide significance (p < 5 × 10−8). Nevertheless, the COURAGE-PD dataset confirmed the role of the previously published TMEM175 variant as a genetic determinant of the AAO of PD with Bonferroni-corrected nominal levels of significance (p < 0.025): (rs34311866: β(SE)COURAGE = 0.477(0.203), pCOURAGE = 0.0185). The subsequent meta-analysis of COURAGE-PD and IPDGC datasets (Ntotal = 25,950) led to the identification of 2 genome-wide significant association signals on Chr 4, including the previously reported SNCA locus (rs983361: β(SE)COURAGE+IPDGC = 0.720(0.122), pCOURAGE+IPDGC = 3.13 × 10−9) and a novel BST1 locus (rs4698412: β(SE)COURAGE+IPDGC = −0.526(0.096), pCOURAGE+IPDGC = 4.41 × 10−8).
Discussion Our study further refines the genetic architecture of Chr 4 underlying the AAO of the PD phenotype through the identification of BST1 as a novel AAO PD locus. These findings open a new direction for the development of treatments to delay the onset of PD
Membrane surface zwitterionization for an efficient microalgal harvesting: A review
No full textMembrane technology has emerged as a possible solution to the challenge of biomass recovery facing microalgal industry. However, fouling phenomenon hinders the development of membrane processes. In this regard, different fouling mitigation strategies have been developed, among which membrane surface modification is one of the most promising approaches to enhance fouling resistance. Among the surface-active materials that have been explored for membrane antifouling surface modification, zwitterionic materials show superior antifouling properties. This review discusses the unique structural features of zwitterionic materials giving rise to several outstanding properties such as high polarity, anti-polyelectrolyte effect, molecular self-association and super surface hydration which act synergistically to deal with an array of foulants in feed solutions. The foulant dynamics and fouling mechanism in microalgal culture processing are also highlighted and the anti-fouling mechanisms of zwitterionic materials such as physical and steric hindrances are discussed. Membrane zwitterionization approaches are critically outlined and their potential application for effective microalgal culture dewatering is discussed
Longitudinal changes in wellbeing amongst breastfeeding women in Australia and New Zealand during the COVID-19 pandemic
Get PDFThe COVID-19 pandemic has impacted new mothers’ wellbeing and breastfeeding experience. Women have experienced changes in birth and postnatal care and restricted access to their support network. It is unclear how these impacts may have changed over time with shifting rates of infection and policies restricting movement and access to services in Australia and New Zealand. This study investigated the longitudinal effect of the COVID-19 pandemic on breastfeeding and maternal wellbeing in Australia and New Zealand. Mothers (n = 246) completed an online survey every 4 weeks for 6 months that examined feeding methods, maternal mental wellbeing, worries, challenges, and positive experiences during the pandemic. Mothers maintained high full breastfeeding rates at 4 months (81%) which decreased to 37% at 6 months. Perceived low milk supply contributed to the earlier cessation of full breastfeeding. Poor infant sleep was associated with stress, perinatal anxiety, mental wellbeing, and breastfeeding status. Although mothers initially reported that lockdowns helped with family bonding and less pressure, prolonged lockdowns appeared to have adverse effects on access to social networks and extended family support.
Conclusion: The results highlight the changing dynamic of the pandemic and the need for adaptable perinatal services which allow mothers access to in-person services and their support network even in lockdowns. Similarly, access to continuous education and clinical care remains critical for women experiencing concerns about their milk supply, infant sleep, and their own wellbeing
Demographics and viability of an estuarine community of Indo‐Pacific bottlenose dolphins
Get PDFWildlife management requires reliable demographic information to assess the status of a population and its vulnerability to threats. This study calculated age class- and sex-specific demographic parameters and assessed the viability of a community of Indo-Pacific bottlenose dolphins (Tursiops aduncus) resident to the Peel-Harvey Estuary in Western Australia. Boat-based photo-identification surveys (n = 483) were conducted between 2016 and 2019. A population viability analysis (PVA) was used to assess the community status and evaluate the effects of adult female and calf mortality, and reproduction on population growth rate. The community comprised 88 (SD = 4.43) individuals with a sex ratio close to parity in all but the adult age class where it was skewed towards females. Demographic changes in this community are driven by births, deaths, and the likely permanent emigration of juvenile males. No immigration was observed. The population is stable (r = −0.004, SD = 0.062) given the current demographic rates. To maintain a community of ~90 individuals, management should consider action to lower adult female and calf mortality. This should involve aiming for zero human caused mortality and ensuring adverse impacts to the population are considered in future development planning
Non-reference genome transposable elements (TEs) have a significant impact on the progression of the Parkinson’s disease
No full textThe pathophysiology of Parkinson’s disease (PD) is a complex process of the interaction between genetic and environmental factors. Studies on the genetic component of PD have predominantly focused on single nucleotide polymorphisms (SNPs) using a cross-sectional case–control design in large genome-wide association studies. This approach while giving insight into a significant portion of the genetics of PD does not fully account for all the genetic components resulting in missing heritability. In this study, we approached this problem by focusing on the non-reference genome transposable elements (TEs) and their impact on the progression of PD using a longitudinal study design within the Parkinson’s progression markers initiative (PPMI) cohort. We analyzed 2886 Alu repeats, 360 LINE1 and 128 SINE-VNTR-Alus (SVAs) that were called from the whole-genome sequence data which are not within the reference genome. The presence or absence of these non-reference TE variants is known as a retrotransposon insertion polymorphism, and measuring this polymorphism describes the impact of TEs on the traits. The variations for the presence or absence of the non-reference TE elements were modeled to align with the changes in the 114 outcome measures during the five-year follow-up period of the PPMI cohort. Linear mixed-effects models were used, and many TEs were found to have a highly significant effect on the longitudinal changes in the clinically important PD outcomes such as UPDRS subscale II, UPDRS total scores, and modified Schwab and England ADL scale. In addition, the progression of several imaging and functional measures, including the Caudate/Putamen ratio and levodopa equivalent daily dose (LEDD) were also significantly affected by the TEs. In conclusion, this study identified the overwhelming effect of the non-reference TEs on the progression of PD and is a good example of the impact the variations in the “junk DNA” have on complex diseases
Identification of two chickpea multidrug and toxic compound extrusion transporter genes transcriptionally upregulated upon aluminum treatment in root tips
Get PDFAluminum (Al) toxicity poses a significant challenge for the yield improvement of chickpea, which is an economically important legume crop with high nutritional value in human diets. The genetic basis of Al-tolerance in chickpea remains unclear. Here, we assessed the Al-tolerance of 8 wild Cicer and one cultivated chickpea (PBA Pistol) accessions by measuring the root elongation in solution culture under control (0 μM Al3+) and Al treatments (15, 30 μM Al3+). Compared to PBA Pistol, the wild Cicer accessions displayed both tolerant and sensitive phenotypes, supporting wild Cicer as a potential genetic pool for Al-tolerance improvement. To identify potential genes related to Al-tolerance in chickpea, genome-wide screening of multidrug and toxic compound extrusion (MATE) encoding genes was performed. Fifty-six MATE genes were identified in total, which can be divided into 4 major phylogenetic groups. Four chickpea MATE genes (CaMATE1-4) were clustered with the previously characterized citrate transporters MtMATE66 and MtMATE69 in Medicago truncatula. Transcriptome data showed that CaMATE1-4 have diverse expression profiles, with CaMATE2 being root-specific. qRT-PCR analyses confirmed that CaMATE2 and CaMATE4 were highly expressed in root tips and were up-regulated upon Al treatment in all chickpea lines. Further measurement of carboxylic acids showed that malonic acid, instead of malate or citrate, is the major extruded acid by Cicer spp. root. Protein structural modeling analyses revealed that CaMATE2 has a divergent substrate-binding cavity from Arabidopsis AtFRD3, which may explain the different acid-secretion profile for chickpea. Pangenome survey showed that CaMATE1-4 have much higher genetic diversity in wild Cicer than that in cultivated chickpea. This first identification of CaMATE2 and CaMATE4 responsive to Al3+ treatment in Cicer paves the way for future functional characterization of MATE genes in Cicer spp., and to facilitate future design of gene-specific markers for Al-tolerant line selection in chickpea breeding programs
Besties, villains, and sidekicks: Representations of queer people from Agatha Christie’s 1950 novel A Murder Is Announced to its 2005 film adaptation
Get PDFIn the many adaptations of Agatha Christie novels, it could be assumed that the representation of queer people would change as societal norms and values also change over time. However, this study calls this assumption into question.
I investigate how the representations of queer people in Agatha Christie’s A Murder Is Announced changed from the original 1950 novel to its 2005 film adaptation, exploring the extent to which Christie’s novel and its filmic adaptation work to reflect queer representations over an extended period. I examine the differences in queer representation between the novel and the film, and how these differences reflect or challenge societal changes. This process of analysis further uncovers a strong connection between crime fiction and queer theory. I found that the queer theory principles of performativity and deconstruction of identity aligns with the performance of identity and innocence in crime fiction, as well as the deconstruction of identity as the detective searches for the criminal. I argue that these intersections between queer theory and crime fiction are central to Christie’s crime fiction narratives.
Representations of queer people from 1950 to 2005 in Christie’s crime fiction underwent minimal change. The exploration of the setting of the narrative, in terms of both era and location, uncovers layers of identity performance and social permeability which reinforce identity as an important element of the narrative. Through the analysis of butch/femme lesbian representation, I find a reliance on the performance of heteronormative stereotypes used by both texts to demonstrate loving relationships. The representations of queer people in the 2005 film adaptation of A Murder Is Announced suggests an insistence that queer people be represented through dated stereotypes originating from the 1950s; a stylistic choice that may be reflective of the target audience for Christie’s work, instead of an attempt to update queer representations to appeal to a new contemporary audience
Immunomulation effect of alginic acid and chitooligosaccharides in silver carp (Hypophthalmichthys molitrix)
No full textIndividual and combined efficacy of chitooligosaccharides (COS) and alginic acid (AA) at 1 g, 2 g, and 3 g per kg diet was assessed on growth and disease resistance in silver carp (Hypophthalmichthys molitrix) against Edwardsiella ictaluri. Growth parameters including specific growth rate (SGR), weight gain (WG), and feed conversion rate (FCR) were significant in fish fed 2 g and 3 g kg−1 of COS or AA, and fish fed combined COS + AA at 1, 2 and 3 kg−1 diet. In all groups, the survival rate (SR) was recorded 100%, except in group fed 2 g kg−1 AA diet. All the hematological and biochemical profiles significantly increased in groups fed 2 g and 3 g kg−1 of COS, AA, and COS + AA diets. Lipase and amylase enzyme activities and superoxide dismutase (SOD), malondialdehyde (MDA), glutathione peroxidase (GPx) antioxidant enzyme activities were significantly increased in fish fed 2 g and 3 g kg−1 of COS, AA, and COS + AA diet. Respiratory burst (RB), lysozyme (Lyz), reactive oxygen species (ROS) activities, and immunoglobuline (Ig) level were enhanced significantly in fish fed 2 g kg−1 of COS or COS + AA and all 3 g kg−1 diets, whereas nitric acid (NO) production and serum AP activity were improved in 2 g kg−1 COS + AA and 3 g kg−1 COS or COS + AA diets. Pro-inflammatory cytokine such as IL-8 mRNA transcriptions was significant in 2 g kg−1 COS + AA diet and all 3 g kg−1 diet. The IL-10 anti-inflammatory cytokine mRNA transcriptions were significant in 3 g kg−1 COS or COS + AA diets. This study was confirmed that H. molitrix fed with 3 g kg−1 COS or COS + AA diets were better activity when compared to other diet
Improving sightings-derived residency estimation for whale shark aggregations: A novel metric applied to a global data set
No full textThe world’s largest extant fish, the whale shark Rhincodon typus, is one of the most-studied species of sharks globally. The discovery of predictable aggregation sites where these animals gather seasonally or are sighted year-round – most of which are coastal and juvenile-dominated – has allowed for a rapid expansion of research on this species. The most common method for studying whale sharks at these sites is photographic identification (photo-ID). This technique allows for long-term individual-based data to be collected which can, in turn, be used to evaluate population structure, build population models, identify long-distance movements, and assess philopatry and other population dynamics. Lagged identification rate (LIR) models have fewer underlying assumptions than more traditional capture mark recapture approaches, making them more broadly applicable to marine taxa, especially far-ranging megafauna species like whale sharks. However, the increased flexibility comes at a cost. Parameter estimations based on LIR can be difficult to interpret and may not be comparable between areas with different sampling regimes. Using a unique data-set from the Philippines with ~8 years of nearly continuous survey effort, we were able to derive a metric for converting LIR residency estimates into more intuitive days-per-year units. We applied this metric to 25 different sites allowing for the first quantitatively-meaningful comparison of sightings-derived residence among the world’s whale shark aggregations. We validated these results against the only three published acoustic residence metrics (falling within the ranges established by these earlier works in all cases). The results were then used to understand residency behaviours exhibited by the sharks at each site. The adjusted residency metric is an improvement to LIR-based population modelling, already one of the most widely used tools for describing whale shark aggregations. The standardised methods presented here can serve as a valuable tool for assessing residency patterns of whale sharks, which is crucial for tailored conservation action, and can cautiously be tested in other taxa