Murdoch University

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    Associations between prenatal exposure to phthalates and timing of menarche and growth and adiposity into Adulthood: A Twenty-Years Birth Cohort Study

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    Phthalates are ubiquitous environmental chemicals with endocrine disrupting properties and potentially obesogenic effects. We hypothesised that antenatal phthalate exposure may influence growth and adiposity patterns in girls through childhood into adolescence. Among 1342 Raine Study singleton females, 462 had maternal serum and at least one outcome available up to 20 years of age. Individuals’ maternal serum collected at 18 and 34 weeks gestation was pooled and analyzed for concentrations of 32 metabolites of 15 phthalate diesters. Cox regression and linear models were used to determine associations between maternal phthalate levels and age at menarche, change in height and weight z-scores between birth and two years, height from birth to 20 years, BMI from two to 20 years, deviation from mid-parental height at age 20 and DEXA scan measures at age 20. Weak negative associations were detected with some phthalate metabolites and change in height and weight z-score during infancy. Weak positive associations between some of the high molecular weight phthalate metabolites and height z-score were detected during childhood. While still within the normal range, age at menarche was slightly delayed in girls with higher prenatal exposure to the higher molecular weight phthalate metabolites. We derived some associations between prenatal phthalate exposure with early growth patterns and age at menarche

    Genomic structural equation modelling provides a whole-system approach for the future crop breeding

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    Breeding crop cultivars with optimal value across multiple traits has been a challenge, as traits may negatively correlate due to pleiotropy or genetic linkage. For example, grain yield and grain protein content correlate negatively with each other in cereal crops. Future crop breeding needs to be based on practical yet accurate evaluation and effective selection of beneficial trait to retain genes with the best agronomic score for multiple traits. Here, we test the framework of whole-system-based approach using structural equation modelling (SEM) to investigate how one trait affects others to guide the optimal selection of a combination of agronomically important traits. Using ten traits and genome-wide SNP profiles from a worldwide barley panel and SEM analysis, we revealed a network of interacting traits, in which tiller number contributes positively to both grain yield and protein content; we further identified common genetic factors affecting multiple traits in the network of interaction. Our method demonstrates an efficient way to identify genetically correlating traits and underlying pleiotropic genetic factors and provides an effective proxy for multi-trait selection within a whole-system framework that considers the joint genetic architecture of multiple interacting traits in crop breeding. Our findings suggest the promise of a whole-system approach to overcome challenges such as the negative correlation of grain yield and protein content to facilitating quantitative and objective breeding decisions in future crop breeding

    Spatially weighted estimation of broadacre crop growth improves gap-filling of Landsat NDVI

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    Seasonal climate is the main driver of crop growth and yield in broadacre grain cropping systems. With a 40-year record of 30 m resolution images and 16-day revisits, the Landsat satellite series is ideal for producing long-term records of remotely sensed phenology to build understanding of how climate affects crop growth. However, the time-series of Landsat images exhibits gaps caused by cloud cover, which is common in wet periods when crops reach maximum growth. We propose a novel spatial–temporal approach to gap-filling that avoids data fusion. Crop growth curve estimation is used to perform temporal smoothing and incorporation of spatial weights allows spatial smoothing. We tested our approach using Landsat NDVI data acquired for an 8000 ha study area in Western Australia using a train/test approach where 157 available Landsat-7 images between 2013 and 2019 were used to train the model, and 95 at least 80% cloud-free Landsat-8 images from the same period were used to test its performance. We found that compared to nonspatial estimation, use of spatial weights in growth curve estimation improved correlation between observed and predicted NDVI by 75%, MAE by 31% and RMSE by 75%. For cropland, the correlation is improved by 58%, the MAE by 36% and the RMSE by 76%. We conclude that spatially weighted estimation of crop growth curves can be used to fill spatial and temporal gaps in Landsat NDVI for the purpose of within-field monitoring. Our approach is also applicable to other data sources and vegetation indices

    Coupling adjacent microgrids and cluster formation under a Look-Ahead approach reassuring optimal operation and satisfactory voltage and frequency

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    Microgrids (MGs) are promising approaches to proliferate distributed energy resources for electrification in remote areas. However, to deal with the uncertainties of renewables and energy demand, special measures are required. Energy storages, controllable loads and reconfigurable networks are some of those measures that improve MGs’ flexibility. Another alternative is temporarily coupling the adjacent MGs to support each other and form coupled MGs (CMGs). This paper proposes a look-ahead technique to form CMGs while reassuring the optimal performance of all MGs. Preserving the voltage and frequency of each MG is also another key objective. The proposed optimization approach tries to solve the voltage/frequency problem by forming the CMGs when the local actions (such as energy storages) are inadequate or cost-ineffective. The proposed technique considers the operational cost, technical and environmental aspects, reliability and losses in the CMG formation. This technique is general and can be used for complex topologies and also to form multiple CMGs if deemed more suitable. The performance of the developed technique is validated through extensive numerical analyses in MATLAB

    Effect of initial cell concentration on Bio-Oxidation of pyrite before gold cyanidation

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    Bio-oxidation of refractory sulfidic gold minerals has been applied at the commercial scale as a pre-treatment to improve gold yields and reduce chemical consumption during gold cyanidation. In this study, the effect of initial cell concentration on the oxidation of pyritic gold ore was evaluated with four aerated bioreactors at 30 °C with 10% pulp density and pH maintained at 1.4 with NaOH. Results of NaOH consumption and changes in soluble Fe and S concentrations indicated that increasing the initial cell concentration from 2.3 × 107 to 2.3 × 1010 cells mL−1 enhanced pyrite oxidation during the first week. However, by day 18 the reactor with the lowest initial cell concentration showed profound performance enhancement based on soluble Fe and S concentrations, sulfide-S and pyrite contents in the residues, and subsequent gold leaching of the bio-oxidation residues by cyanidation. Overall, the results showed that the cell concentration was clearly beneficial during the initial stages of oxidation (first 7–8 days)

    A framework for supporting botanical literacies in Early Childhood Education

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    This presentation shares a PhD research project on botanical literacies in Early Childhood Education (ECE). Although young children in ECE in Australia are often involved in learning in outdoor natural environments, research on their knowledge and attitudes towards plants is limited. Botanical literacies in young children involves developing knowledge and curiosity about plants, formulating questions about plants, and critically and ethically thinking about plants and their environments. The study explored young children’s knowledge and attitudes of the flora in the native bushlands on their school grounds. A total of 41 children, aged five to eight from two schools in Western Australia were involved in the research over one school year. Fortnightly visits to the school bushlands with the lead researcher involved bush walks, informal and formal conversations about plants, children creating drawings, maps and taking photos, as well as visits from local Indigenous people to share Indigenous knowledge of the plants. The data was analysed using content analysis and a revised version of Uno’s (2009) levels of botanical literacies. The results of this research led to the development of a framework for developing botanical literacies in ECE

    Whole-genome comparative analysis reveals association between salmonella genomic variation and egg production systems

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    Non-typhoidal Salmonella, particularly Salmonella enterica serovar Typhimurium (S. Typhimurium), is the predominant endemic serovar in the Australian egg production industry and is one of the most frequently reported serovars in foodborne infections in Australia. This study was conducted to investigate the genomic characteristics of Salmonella isolated from retail table eggs in Western Australia and to identify the impact of production systems on genomic characteristics of Salmonella such as virulence and antimicrobial resistance. A total of 40 non-typhoidal Salmonella isolates [S. Typhimurium isolates (n = 28) and Salmonella Infantis isolates (n = 12)] sourced from retail eggs produced by different production systems (barn-laid, cage, and free-range) in Western Australia were sequenced by whole-genome sequencing. The isolates were de novo assembled, annotated, and analyzed. The results indicated an association between Salmonella genomic variation and the system used to raise poultry for egg production (p-value < 0.05). All but one of the S. Infantis isolates were recovered from eggs collected from poultry raised under barn and cage production systems. A higher proportion (83.3%) of S. Typhimurium isolates were recovered from the eggs produced by free-range production system as compared with those produced under barn (76.9%) and cage production systems (53.3%). Our analysis indicated that Salmonella isolated from the eggs produced by barn and cage production systems had more virulence genes than the isolates of the free-range produced eggs. A low carriage of antimicrobial-resistant gene was detected in the isolates of this study. We have built a Salmonella genomics database and characteristics-linked gene pools to facilitate future study, characterization, and tracing of Salmonella outbreaks

    Influence of preanalytical factors on feline proteinuria

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    Background To date, little information is available about the effect of preanalytical factors on the urinary protein-to-creatinine (UPC) ratio in cats. Objectives We aimed to evaluate the effect of a commercially available cat litter, creatinine measurements at three different dilutions of urine, and different storage conditions on the UPC ratio in cats. Methods Feline urine specimens were prospectively collected. Twenty-two whole-urine specimens were placed uncovered and in contact with cat litter for 1 hour; 25 urine supernatants were diluted 1:10, 1:20, and 1:100 for creatinine measurements. The correlation, difference, agreement, and concordance in classifying specimens according to International Renal Interest Society staging were determined. Storage effects on UPC ratios were assessed in specimens stored for 6 hours at +20℃ (n = 20), 1 week at +4℃ (n = 20), and 3 months at −20℃ (n = 25). Specimens were also subjected to four freeze-thaw cycles (n = 20). Results were compared, and clinical significance was assessed by comparing each UPC ratio to the inter-assay range of the baseline value. Results Exposure to cat litter did not affect UPC ratios. A positive proportional bias was found in the 1:100 dilution compared with the 1:20 dilution; however, concordance was high for all comparisons. At +20, +4℃, and after four repeated freeze-thaw cycles, UPC ratios were stable. Compared with baseline values, UPC ratios decreased (P < .01) after 8 and 12 weeks at −20℃. However, all UPC ratios were within the inter-assay variability of the baseline value. Conclusions Exposure to cat litter did not affect UPC ratios, but further studies are necessary to evaluate other potential variables. The effects of the dilutions and storage conditions were clinically acceptable, although the 1:20 and 1:100 dilutions were not perfectly comparable

    The efficacy of three double-microencapsulation methods for preservation of probiotic bacteria

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    Lactic acid bacteria (LAB) are used as a probiotic alternative to antibiotics in livestock production. Microencapsulation technology is widely used for probiotic preservation. A variety of microencapsulation protocols have been proposed and compared based on chemicals and mechanical procedures. This study aimed to develop a double-encapsulated coating from alginate (1.5%) and chitosan (0.5%) by extrusion, emulsion, and spray drying methods using the LAB strains Lactobacillus plantarum strains 31F, 25F, 22F, Pediococcus pentosaceus 77F, and P. acidilactici 72N, and to monitor the basic probiotic properties of the encapsulated prototypes. The final products from each microencapsulation protocol were analysed for their appearance, probiotic properties and viable cell count. Using the spray drying method, particles smaller than 15 μm in diameter with a regular spherical shape were obtained, whereas the other methods produced larger (1.4–52 mm) and irregularly shaped microcapsules. After storage for 6 months at room temperature, the LAB viability of the spray-dried particles was the highest among the three methods. In all the LAB strains examined, the encapsulated LAB retained their probiotic properties in relation to acid-bile tolerance and antibacterial activity. This study highlights the efficacy of double-coating microencapsulation for preserving LAB properties and survival rate, and demonstrates its potential for probiotic application in livestock farms

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