of Botany,Chinese Academy Of Sciences
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Carbon and nitrogen cycling on the Qinghai-Tibetan Plateau
No full textThe Qinghai-Tibetan Plateau (QTP) has experienced atmospheric warming, cryosphere thaw and intensified human activities since the 1970s. These changes have had sometimes striking impacts on the hydrology, ecosystems and biogeochemistry of the region. In this Review, we describe carbon and nitrogen cycling on the QTP. Overall, the QTP has been a net carbon sink (with a net carbon balance of similar to 44 million tons of carbon uptake peryear) and a methane source (similar to 0.96 trillion grams per year of carbon in the form of methane, TgCH(4)-Cyr(-1)) since the 2000s. Rising temperatures, precipitation and nitrogen availability drive primary productivity increases, leading to increased carbon uptake. Conversely, these factors also increase greenhouse gas emissions, soil respiration rates and permafrost carbon mobilization, increasing carbon loss. Anthropogenic activities such as overgrazing and construction decrease plant production and soil carbon and nitrogen stocks, but restoration efforts on the QTP drive regional increases in these stocks. On balance, these changes are complex but largely offset each other. In the future, the QTP is predicted to still function as a net carbon sink, despite ongoing severe permafrost degradation. Moreover, nitrogen stocks are expected to remain relatively stable, partly related to potential future decreases in nitrogen deposition
Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants
No full textThe early diversification of angiosperms is thought to have been a rapid process, which may complicate phylogenetic analyses of early angiosperm relationships. Plastid and nuclear phylogenomic studies have raised several conflicting hypotheses regarding overall angiosperm phylogeny, but mitochondrial genomes have been largely ignored as a relevant source of information. Here we sequenced mitochondrial genomes from 18 angiosperms to fill taxon-sampling gaps in Austrobaileyales, magnoliids, Chloranthales, Ceratophyllales, and major lineages of eudicots and monocots. We assembled a data matrix of 38 mitochondrial genes from 107 taxa to assess how well mitochondrial genomic data address current uncertainties in angiosperm relationships. Although we recovered conflicting phylogenies based on different data sets and analytical methods, we also observed congruence regarding deep relationships of several major angiosperm lineages: Chloranthales were always inferred to be the sister group of Ceratophyllales, Austrobaileyales to mesangiosperms, and the unplaced Dilleniales was consistently resolved as the sister to superasterids. Substitutional saturation, GC compositional heterogeneity, and codon-usage bias are possible reasons for the noise/conflict that may impact phylogenetic reconstruction; and angiosperm mitochondrial genes may not be substantially affected by these factors. The third codon positions of the mitochondrial genes appear to contain more parsimony-informative sites than the first and second codon positions, and therefore produced better resolved phylogenetic relationships with generally strong support. The relationships among these major lineages remain incompletely resolved, perhaps as a result of the rapidity of early radiations. Nevertheless, data from mitochondrial genomes provide additional evidence and alternative hypotheses for exploring the early evolution and diversification of the angiosperms
OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm
No full textStarch synthesis makes a dramatic contribution to the yield and nutritional value of cereal crops. Although several starch synthesis enzymes and related regulators have been reported, the underlying regulatory mechanisms of starch synthesis remain largely unknown. OsMADS14 is a FRUITFULL (FUL)-like MADS-box gene in rice (Oryza sativa). Here we show that two null mutations of OsMADS14 result in a shrunken and chalky grain phenotype. It is caused by obviously defective compound starch granules and a significantly reduced content of both total starch and amylose in the endosperm. Transcriptomic profiling analyses revealed that the loss-of-function of OsMADS14 leads to significantly downregulated expression of many core starch synthesis genes, including OsAGPL2 and Waxy. Both in vitro and in vivo assays demonstrate that the OsMADS14 protein directly binds to stretches of DNA with a CArG-box consensus in the putative regulatory regions of OsAGPL2 and Waxy. Protein-protein interaction experiments also suggest that OsMADS14 interacts with nuclear factor NF-YB1 to promote the transcription of OsAGPL2 and Waxy. Our study thus demonstrates that OsMADS14 plays an essential role in the synthesis of storage starch and provides novel insights into the underlying molecular mechanism that may be used to improve rice cultivars by molecular breeding
Adaptive plasticity in response to light and nutrient availability in the clonal plant Duchesnea indica
No full textPhenotypic plasticity enables plants to buffer against environmental stresses and match their phenotypes to local conditions. However, consistent conclusive evidence for adaptive plasticity has only been obtained for a few traits. More studies on a wider variety of plant functional traits and environmental factors are still needed to further understand the adaptive significance of plasticity. We grew 21 genotypes of the stoloniferous clonal plant Duchesnea indica under different light and nutrient conditions, and used selection gradient analyses to test the adaptive value (benefits) of morphological and physiological plasticity responding to variation in light and nutrient availability. Plants grown in shade exhibited lower values for fitness measures (fruit number, ramet number and biomass), shortened thinner internode length and decreased adult leaf chlorophyll content, but higher petiole length, specific leaf area and old leaf chlorophyll content, than plants grown without shade. Plants grown in the low nutrient condition had shorter petiole length, thicker and smaller leaf area, lower chlorophyll content, but higher fruit number and root:shoot ratio than plants grown under the high nutrient condition. Selection gradient analyses revealed that plasticity of petiole length and old leaf chlorophyll content in response to light variation was adaptive, and plasticity of old and adult leaf chlorophyll content in response to nutrient variation was adaptive. Therefore, the adaptive value of plasticity in different traits depends on the specific ecological context. Our findings contribute to understanding the adaptive significance of phenotypic plasticity of clonal plants in response to environmental variation
A new dry forest species, Phyllarthron arenicola (Bignoniaceae: Coleeae), from North-Western Madagascar
No full textPhyllarthron is a genus of large trees and shrubs with 18 currently recognised Malagasy species and one further species restricted to the Comoro Archipelago (P. comorense DC.). Most of the species occur in sub-humid and humid parts of Madagascar, with only five currently recognised species in dry and semi-arid zones. The species newly described here occurs in dry shrubby vegetation on white sand. The number, shape and relative proportions of the leaf articles, and the presence of pubescence on the leaves, fruit, flower and the young shoots immediately distinguishes this species from others in the genus
Floral ontogeny of Delphinium anthriscifolium (Ranunculaceae) and development of intrafloral and symmetrical resupinated organs
No full textDelphinieae (Ranunculaceae) are characterized by zygomorphic spiral flowers and show a remarkable diversity of perianth organization. Floral structure and development have been investigated in most lineages of the tribe, mainly focusing on the establishment of symmetry and on perianth development. In this study, floral organogenesis and morphogenesis in Delphinium anthriscifolium, a member of the recently erected Delphinium subgenus Anthriscifolium, were investigated and compared with those of other species of Delphinieae in a phylogenetic context. In D. anthriscifolium, zygomorphy of the spiral flower is established soon after the initiation of sepal primordia. Among the four fully developed petals of the dorsoventralized corolla, the two dorsalmost ones become spurred, and the lateral petals resupinate before anthesis and are mirror images of each other. Resupination of petals, long overlooked in morphological studies of Delphinieae, is here reported in Ranunculaceae for the first time.The role of resupinated petals, possibly acting as a landing platform for nectar foragers, may be of high adaptive significance. Based on our new findings regarding floral ontogeny and morphology in D. anthriscifolium, we provide an updated picture of floral evolution in Delphinieae
The response of soil respiration to different N compounds addition in a saline-alkaline grassland of northern China
No full textThe increase in atmospheric nitrogen (N) deposition has profound effects on soil respiration (SR). However, the responses of SR to the addition of different N compounds, particularly in saline-alkaline grasslands remain unclear. A 3-year controlled field experiment was conducted to investigate the responses of SR to different N compounds (NH4NO3, (NH4)(2)SO4 and NH4HCO3) during the growing seasons in a saline-alkaline grassland located in the agro-pastoral ecotone of northern China. Our results demonstrated that SR showed a bimodal pattern and a significant interannual difference that was regulated by air or soil temperature and precipitation. Nitrogen addition had a significant effect on SR, and the effect of N addition on SR varied yearly, which was related to seasonal precipitation. The mean SR across 3 years (2017-2019) was increased by 19.9%, 13.0% and 16.6% with the addition of NH4NO3, (NH4)(2)SO4 and NH4HCO3, respectively. The highest effect of NH4NO3 addition on SR across 3 years was ascribed to the highest aboveground net primary production, belowground net primary production (BNPP) and soil NO3- concentrations. SR (C loss) was significantly increased while plant productivity (C input) did not significantly change under NH4HCO3 addition, indicating a decrease in C sequestration. In addition, BNPP was the main direct factor influencing SR in this saline-alkaline grassland, and soil salinization (e.g. soil base cations and pH) indirectly affected SR through soil microorganisms. Notably, NH4NO3 addition overestimated the response of SR to N addition, and different N compounds should be considered, especially in saline-alkaline grassland
Potential Effects of 25-Hydroxycholecalciferol on the Growth Performance, Blood Antioxidant Capacity, Intestinal Barrier Function and Microbiota in Broilers under Lipopolysaccharide Challenge
No full textOur experiment was to detect the effects of 25-hydroxycholecalciferol (25OHD(3)) on antioxidant capacity, immune status and gut health of broilers under lipopolysaccharide (LPS) challenge. In total, 108 male Arbor Acre broilers (48.5 +/- 0.4 g) were allotted to three treatment groups containing six replicates for each group with six birds per replicate: (1) corn-soybean basal diet + injection of sterile saline (CON group); (2) corn-soybean basal diet + an injection of LPS (LPS group); (3) corn-soybean basal diet with 50 mu g/kg 25OHD(3) + injection of LPS (LPS + 25-D group). At the end of the experiment, birds were intraperitoneally injected with LPS in the LPS and LPS + 25-D groups based on the dosage of 5.0 mg/kg BW, or the equivalent volume of 0.9% sterile saline in the CON group. At 4 h postinjection, blood samples, jejunal and ileal tissues and cecal digesta were collected to analyze blood antioxidant capacity, intestinal barrier function and microbiota. The results showed that broilers challenged with LPS had significantly higher BW loss than the CON group, and 25OHD(3) alleviated BW loss induced by the LPS challenge. 25OHD(3) alleviated the LPS-induced decline (p < 0.05) in serum activities of superoxide dismutase (SOD) and immunoglobulin G (IgG), as well as prevented the LPS-induced increase (p < 0.05) in serum content of tumor necrosis factor-alpha (TNF-alpha). 25OHD(3) significantly increased villus height in the jejunum and the relative mRNA abundance of Occludin in the jejunum and ileum, as well as prevented the LPS-induced increase in the jejunal content of interferon-gamma (IFN-gamma) compared with the LPS group. Compared with the LPS group, 25OHD3 significantly increased Lactobacillus abundance and decreased Lachnoclostridium abundance in the cecal digesta, as well as had the potential to enhance metabolite contents including propionate, isobutyrate, butyrate and total SCFA. The correlation analysis revealed that BW loss and serum contents of TNF-alpha, IL-1 beta and D-lactate were positively correlated with Lachnoclostridium and negatively correlated with Lactobacillus (p < 0.05). Overall, 25OHD(3) partially improves the antioxidant status, immunity, intestinal barrier and microbial composition of broilers under the LPS challenge
Floral morphology and phenology of Sassafras tzumu (Lauraceae)
No full textBackground Sassafras has been considered to belong to trib. Laureae of Lauraceae and has been assumed to have unisexual flowers. However, recent molecular phylogenetic studies have consistently suggested that Sassafras does not belong to the trib. Laureae but to Cinnamomeae and that it is nested within Cinnamomum. A recent morphological study revealed that one of the Asian species, S. randaiense, possesses bisexual flowers that are plesiomorphic in the family Lauraceae. As reports on the flower structure of the second Asian species, S. tzumu, have been contradictory, we wanted to ascertain if it has bisexual flowers or not. If the flowers were bisexual, could earlier reports that they were unisexual have been based on dichogamous flowering? Results In this study, we investigated two populations of S. tzumu. We found that this species has determinate botryoid racemes, and possesses bisexual flowers. Among the three extant species, S. tzumu is more similar to its sister species S. randaiense but markedly different from the American S. albidum: the two Asian species possess bisexual flowers while the American species has unisexual flowers. The bisexual flower of S. tzumu is protogynous, and shows two phenological phases typical of Lauraceae: 1) in a flower, the pistil functions first, the stigma is fresh and white, stamens of the outer two whorls are spreading, anthers do not open, and the staminodes secrete nectar at this stage; 2) in the second phase, the stigma becomes brown, staminodes are withered, stamens of the third whorl stand up and surround the pistil, glands of the third whorl of stamens secrete nectar, and the anthers open and release pollen. Conclusions The similarity of racemose inflorescences between Sassafras and some members of Laureae were caused by parallel evolution; the racemose inflorescence of ancestral Sassafras originated from the thyrsoid-cymose inflorescence in Cinnamomum. The Asian species S. tzumu and S. randaiense possess bisexual flowers with two phenological phases, the American S. albidum evolved unisexual flowers independently from other clades with unisexual flowers in the Lauraceae, i.e., the Laureae, Alseodaphnopsis in the Perseeae and the unisexual clade in the Ocotea complex of the Cinnamomeae
Molecular mechanisms underlying multi-level defense responses of horticultural crops to fungal pathogens
No full textThe horticultural industry helps to enrich and improve the human diet while contributing to growth of the agricultural economy. However, fungal diseases of horticultural crops frequently occur during pre- and postharvest periods, reducing yields and crop quality and causing huge economic losses and wasted food. Outcomes of fungal diseases depend on both horticultural plant defense responses and fungal pathogenicity. Plant defense responses are highly sophisticated and are generally divided into preformed and induced defense responses. Preformed defense responses include both physical barriers and phytochemicals, which are the first line of protection. Induced defense responses, which include innate immunity (pattern-triggered immunity and effector-triggered immunity), local defense responses, and systemic defense signaling, are triggered to counterstrike fungal pathogens. Therefore, to develop regulatory strategies for horticultural plant resistance, a comprehensive understanding of defense responses and their underlying mechanisms is critical. Recently, integrated multi-omics analyses, CRISPR-Cas9-based gene editing, high-throughput sequencing, and data mining have greatly contributed to identification and functional determination of novel phytochemicals, regulatory factors, and signaling molecules and their signaling pathways in plant resistance. In this review, research progress on defense responses of horticultural crops to fungal pathogens and novel regulatory strategies to regulate induction of plant resistance are summarized, and then the problems, challenges, and future research directions are examined