of Botany,Chinese Academy Of Sciences
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Improving bread wheat yield through modulating an unselected AP2/ERF gene
No full textUsing Brachypodium distachyon as a wheat proxy, Wang et al. identified DUO-B1, an AP2/ERF transcription factor, regulating spike type in wheat. duo-B1 leads to increased yield under field conditions without affecting other major agronomic traits. Crop breeding heavily relies on natural genetic variation. However, additional new variations are desired to meet the increasing human demand. Inflorescence architecture determines grain number per spike, a major determinant of bread wheat (Triticum aestivum L.) yield. Here, using Brachypodium distachyon as a wheat proxy, we identified DUO-B1, encoding an APETALA2/ethylene response factor (AP2/ERF) transcription factor, regulating spike inflorescence architecture in bread wheat. Mutations of DUO-B1 lead to mild supernumerary spikelets, increased grain number per spike and, importantly, increased yield under field conditions without affecting other major agronomic traits. DUO-B1 suppresses cell division and promotes the expression of BHt/WFZP, whose mutations could lead to branched 'miracle-wheat'. Pan-genome analysis indicated that DUO-B1 has not been utilized in breeding, and holds promise to increase wheat yield further
Contribution of Fine Roots to Soil Organic Carbon Accumulation in Different Desert Communities in the Sangong River Basin
No full textThis study explored the relationship between soil organic carbon (SOC) and root distribution, with the aim of evaluating the carbon stocks and sequestration potential under five plant communities (Alhagi sparsifolia, Tamarix ramosissima, Reaumuria soongorica, Haloxylon ammodendron, and Phragmites communis) in an arid region, the Sangong River watershed desert ecosystem. Root biomass, ecological factors, and SOC in different layers of a 0-100 cm soil profile were investigated. The results demonstrated that almost all living fine root biomass (11.78-34.41 g/m(2)) and dead fine root biomass (5.64-15.45 g/m(2)) levels were highest in the 10-20 cm layer, except for the P. communis community, which showed the highest living and dead fine root biomass at a depth of 60-70 cm. Fine root biomass showed strong seasonal dynamics in the five communities from June to October. The biomass levels of the A. sparsifolia (138.31 g/m(2)) and H. ammodendron (229.73 g/m(2)) communities were highest in August, whereas those of the T. ramosissima (87.76 g/m(2)), R. soongorica (66.29 g/m(2)), and P. communis (148.31 g/m(2)) communities were highest in September. The SOC of the five communities displayed strong changes with increasing soil depth. The mean SOC value across all five communities was 77.36% at 0-30 cm. The highest SOC values of the A. sparsifolia (3.08 g/kg), T. ramosissima (2.35 g/kg), and R. soongorica (2.34 g/kg) communities were found in June, and the highest value of the H. ammodendron (2.25 and 2.31 g/kg, p > 0.05) community was found in June and September. The highest SOC values of the P. communis (1.88 g/kg) community were found in July. Fine root production and turnover rate were 50.67-486.92 g/m(2)/year and 1.25-1.98 times per year. The relationships among SOC, fine root biomass, and ecological factors (soil water content and soil bulk density) were significant for all five communities. Based on the results, higher soil water content and soil conductivity favored the decomposition of root litter and increased fine root turnover, thereby facilitating SOC formation. Higher pH and bulk density levels are not conducive to soil biological activity and SOC mineralization, leading to increased SOC levels in desert regions
Protective Function of Malus baccata (L.) Borkh Methanol Extract against UVB/Hydrogen Peroxide-Induced Skin Aging via Inhibition of MAPK and NF-κB Signaling
No full textUltraviolet (UV) irradiation induces ROS production, which activates activator protein (AP)-1 and nuclear factor (NF)-kappa B signaling and downstream molecules, ultimately triggering the generation of matrix metalloproteinases (MMPs) and degradation of collagen. The aim of this study was to investigate the protective effect of methanol extract from Malus baccata (L.) Borkh (Mb-ME) against aging. DPPH and ABTS assays showed that Mb-ME had a significant antioxidant capacity. Flow cytometry results indicated that Mb-ME attenuated UVB and H2O2-stimulated apoptosis and reactive oxygen species (ROS) generation. RT-PCR analysis in HaCaT and HDF cells suggested that Mb-ME treatment blocked the expression of MMPs, COX-2, IL-1 beta, IL-6, HYALs, and p53 while promoting the levels of TGM1, FLG, HASs, Sirt1, and Col1A1. Mechanically, Mb-ME inhibited the phosphorylation of MAP kinases and NF-KB signaling. Overall, these results strongly suggest that Mb-ME can be developed as an antiaging therapy
Effects of Vetiveria zizanioides on the Restoration and Succession of Coal Gangue Mountain Plant Communities in Different Years
No full textThe restoration of vegetation on coal gangue mountains has always been an area of concern, and therefore, an important area of research. Liupanshui city in Guizhou province, China, has a large number of coal gangue mountains, and for this reason, was chosen for studying vegetation succession on these sites. Vetiveria zizanioides is known to accelerate the restoration of vegetation on coal gangue mountains and to shorten community succession timeframes. Because of this, we investigated different successional stages after the planting of V. zizanioides on coal gangue mountains in the Dahe coal mine comprehensive environmental governance project area in Liupanshui city. Through field community surveys and model prediction, the effects of planted V. zizanioides on the species composition, species diversity, and community succession of gangue mountains 3, 6, 8, 10, and 13 years after planting were explored. In total, 35 plant species belonging to 17 families and 32 genera were recorded across the five different coal gangue mountains. With more time after planting, the height, coverage, density, and biomass of V. zizanioides all decreased, but increased for Miscanthus floridulus. The Simpson diversity index, Shannon-Wiener diversity index, and Pielou evenness index all first increased before decreasing over time; maximum values were recorded for the coal gangue mountain 8 years after planting of V. zizanioides. According to different similarity and dissimilarity indices, the successional stages became more similar with increasing time after planting. According to biomass fitting and prediction curves, the succession process of coal gangue mountain plant communities could be divided into a V. zizanioides community stage, a M. floridulus community stage, and a woody plant stage, that starts to approach the natural community of evergreen broad-leaved forests, with durations of 0-5.62 years, 5.62-17.48 years, and over 17.48 years, respectively
Five decades of terrestrial and freshwater research at Ny-?lesund, Svalbard
No full textFor more than five decades, research has been conducted at Ny-Alesund, in Svalbard, Norway, to understand the structure and functioning of High Arctic ecosystems and the profound impacts on them of environmental change. Terrestrial, freshwater, glacial and marine ecosystems are accessible year-round from Ny-Alesund, providing unique opportunities for interdisciplinary observational and experimental studies along physical, chemical, hydrological and climatic gradients. Here, we synthesize terrestrial and freshwater research at Ny-Alesund and review current knowledge of biodiversity patterns, species population dynamics and interactions, ecosystem processes, biogeochemical cycles and anthropogenic impacts. There is now strong evidence of past and ongoing biotic changes caused by climate change, including negative effects on populations of many taxa and impacts of rain-on-snow events across multiple trophic levels. While species-level characteristics and responses are well understood for macro-organisms, major knowledge gaps exist for microbes, invertebrates and ecosystem-level processes. In order to fill current knowledge gaps, we recommend (1) maintaining monitoring efforts, while establishing a longterm ecosystem-based monitoring programme; (2) gaining a mechanistic understanding of environmental change impacts on processes and linkages in food webs; (3) identifying trophic interactions and cascades across ecosystems; and (4) integrating long-term data on microbial, invertebrate and freshwater communities, along with measurements of carbon and nutrient fluxes among soils, atmosphere, freshwaters and the marine environment. The synthesis here shows that the Ny-Alesund study system has the characteristics needed to fill these gaps in knowledge, thereby enhancing our understanding of High-Arctic ecosystems and their responses to environmental variability and change
Effects of 12-Year Nitrogen Addition and Mowing on Plant-Soil Micronutrients in a Typical Steppe
No full textChanges in soil micronutrient availability may have adverse consequences on grassland productivity, yet it's still largely unclear how concurrent human practices, such as fertilization and mowing, affect micronutrient cycling in the plant-soil systems. Here, we measured six essential micronutrient (Fe, Mn, Cu, Zn, Co and Mo) contents in both plant pool (separated as aboveground plant parts, litter, and belowground roots) at the community level and soil pool (0-10 cm depth) after 12-year consecutive nitrogen (N) addition (0, 2, 10, and 50 g N m(-2) year(-1)) and mowing in a typical steppe of the Mongolian Plateau. The results show that (i) medium-N (10 g m(-2) year(-1)) and high-N (50 g m(-2) year(-1)) addition rates significantly increased contents of soil-available Fe (+310.0%, averaging across the two N addition rates), Mn (+149.2%), Co (+123.6%) and Mo (+73.9%) irrespective of mowing treatment, whereas these addition treatments usually decreased contents of soil total Fe (-8.9%), Mn (-21.6%), Cu (-15.9%), Zn (-19.5%), Co (-16.4%) and Mo (-34.7%). (ii) Contents of Fe in aboveground plant parts, litter, and roots significantly decreased, whereas plant Mn increased with N addition. Contents of above ground plant Cu, Zn, Co, and Mo significantly decreased at high-N addition rate, whereas contents of micronutrients in roots and litters, except for Fe, generally increased with N addition. Moreover, the total amount of micronutrients in the plant pool (contents x biomass) significantly increased at the medium-N addition rate but decreased at the high-N addition rate. All N addition rates significantly enlarged the pool of litter micronutrients, and roots could hold more micronutrients under N addition, especially combined with mowing treatment. Importantly, although mowing could regulate the effects of N addition on variables (i) and (ii), the effects were weaker overall than those of N addition. (iii) Changes in root micronutrients, except for Mn, could explain corresponding changes in plant micronutrients (R-2: 0.19-0.56, all p < 0.01), and significant linear correlations were also observed between soil-available Fe and Fe in plant and roots. Aboveground plant Mn was significantly correlated with soil-available Mn, while Co and Mo in roots were also significantly correlated with soil-available Co and Mo. These results indicate that soil micronutrient supply capacity may decrease due to a decrease in total micronutrient contents after long-term N addition and mowing. They also suggest that different magnitude responses of soil micronutrients in plants (i.e., litters, roots) and soil should be considered when comprehensively examining nutrient cycling in grassland ecosystems
Zebularine, a DNA Methylation Inhibitor, Activates Anthocyanin Accumulation in Grapevine Cells
No full textThrough its role in the regulation of gene expression, DNA methylation can participate in the control of specialized metabolite production. We have investigated the link between DNA methylation and anthocyanin accumulation in grapevine using the hypomethylating drug, zebularine and Gamay Teinturier cell suspensions. In this model, zebularine increased anthocyanin accumulation in the light, and induced its production in the dark. To unravel the underlying mechanisms, cell transcriptome, metabolic content, and DNA methylation were analyzed. The up-regulation of stress-related genes, as well as a decrease in cell viability, revealed that zebularine affected cell integrity. Concomitantly, the global DNA methylation level was only slightly decreased in the light and not modified in the dark. However, locus-specific analyses demonstrated a decrease in DNA methylation at a few selected loci, including a CACTA DNA transposon and a small region upstream from the UFGT gene, coding for the UDP glucose:flavonoid-3-O-glucosyltransferase, known to be critical for anthocyanin biosynthesis. Moreover, this decrease was correlated with an increase in UFGT expression and in anthocyanin content. In conclusion, our data suggest that UFGT expression could be regulated through DNA methylation in Gamay Teinturier, although the functional link between changes in DNA methylation and UFGT transcription still needs to be demonstrated
Wall-associated kinase-like gene RL1 contributes to red leaves in sorghum
No full textRed leaves are common in trees but rare in cereal crops. Red leaves can be used as raw materials for anthocyanin extraction and may have some adaptive significance for plants. In this study, we discovered a red leaf phenotype in the F-1 hybrids derived from a cross between two sorghum accessions with green leaf. Histological analysis of red leaves and green leaves showed that red compounds accumulate in mesophyll cells and gradually spreads to the entire leaf blade. In addition, we found chloroplasts degraded more quickly in red leaves than in green leaves based on transmission electron microscopy. Metabolic analysis revealed that flavonoids including six anthocyanins are more abundant in red leaves. Moreover, transcriptome analysis revealed that expression of flavonoid biosynthesis genes was upregulated in red leaves. These observations indicate that flavonoids and anthocyanins in particular, are ideal candidates for the red compounds accumulating in red leaves. Segregation analysis of the red leaf phenotype suggested a genetic architecture consisting of three dominant genes, one (RL1 for RED LEAF1) of which we mapped to a 55-kb region on chromosome 7 containing seven genes. Sequencing, reverse transcription-polymerase chain reaction, and transcriptome analysis suggested Sobic.007G214300, encoding a wall-associated kinase, as the most likely candidate for RL1. Fine mapping the red leaf gene and identifying the metabolites that cause red leaf in sorghum provide us with a better understanding of the red leaf phenotype in the natural population of sorghum
Microbial traits determine soil C emission in response to fresh carbon inputs in forests across biomes
No full textSoil priming is a microbial-driven process, which determines key soil-climate feedbacks in response to fresh carbon inputs. Despite its importance, the microbial traits behind this process are largely undetermined. Knowledge of the role of these traits is integral to advance our understanding of how soil microbes regulate carbon (C) emissions in forests, which support the largest soil carbon stocks globally. Using metagenomic sequencing and C-13-glucose, we provide unprecedented evidence that microbial traits explain a unique portion of the variation in soil priming across forest biomes from tropical to cold temperature regions. We show that microbial functional profiles associated with the degradation of labile C, especially rapid simple sugar metabolism, drive soil priming in different forests. Genes involved in the degradation of lignin and aromatic compounds were negatively associated with priming effects in temperate forests, whereas the highest level of soil priming was associated with beta-glucosidase genes in tropical/subtropical forests. Moreover, we reconstructed, for the first time, 42 whole bacterial genomes associated with the soil priming effect and found that these organisms support important gene machinery involved in priming effect. Collectively, our work demonstrates the importance of microbial traits to explain soil priming across forest biomes and suggests that rapid carbon metabolism is responsible for priming effects in forests. This knowledge is important because it advances our understanding on the microbial mechanisms mediating soil-climate feedbacks at a continental scale