Indian Institute of Chemical Biology

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    2058 research outputs found

    Woollins Reagent: A Chemoselective Reducing Agent for 1,4-Enediones and 1,4-Ynediones to Saturated 1,4-Diones

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    Woollins reagent was found to act as a highly chemoselective reagent for the reduction of a wide range of 1,4-enediones and 1,4-ynediones in methanol to afford the corresponding saturated 1,4-diketones in good yields under mild reaction conditions

    Synthesis of S-thiomethyl MAG3, radiolabelling with technetium-99m and biological evaluation

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    Protection of the thiolate function of the mercaptoacetyltriglycine (MAG3) by S-thiomethyl group allows automatic deprotection of the protecting group during technetium-99m radiolabelling by transchelation using stannous chloride dihydrate as reductant. Protection of the thiolate group with S-thiomethyl increases the stability of the ligand, desired complex of high radiochemical purity could be prepared under relatively mild labelling condition (at room temperature) omitting the aeration step. The complex prepared from the S-thiomethyl protected MAG3 ligand were chromatographically (HPLC) and biologically compared with the corresponding complex prepared from the S-benzoylated MAG3 precursor. This result suggests that technetium-99m complex of MAG3 could be prepared from S-thiomethylated MAG3 precursor in comparatively higher purity under relatively milder labelling condition and this method of radiolabelling could be used for the development of less cumbrous single vial MAG3 ki

    ETS-1 Protein Regulates Vascular Endothelial Growth Factor-induced Matrix Metalloproteinase-9 and Matrix Metalloproteinase-13 Expression in Human Ovarian Carcinoma Cell Line SKOV-3

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    The mechanism of vascular endothelial growth factor (VEGF)-regulated expression of MMPs followed by cancer cell scattering/invasion is poorly understood. VEGF induces MMP-9, MMP-13, and ETS-1 through PI3K/AKT and p38 MAPK pathways in SKOV-3 cells. VEGF induces ETS-1, which activates specific MMPS, leading to the invasion/scattering in SKOV-3 cells. This study provides useful information that reveals the molecular mechanism of ovarian cancer metastasis

    Au(I)- and Pt(II)-N-heterocyclic carbene complexes with picoline functionalized benzimidazolin-2-ylidene ligands; synthesis, structures,electrochemistry and cytotoxicity studies

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    Novel Au(I)-N-heterocyclic carbene complexes, 1-methyl-3-(2-pyridylmethyl)- benzimidazolylidenegold(I)-chloride, 1; 1-benzyl-3-(2-pyridylmethyl)- benzimidazolylidenegold(I)chloride, 2; and Pt(II)-N-heterocyclic carbene complexes 1-methyl-3-(2- pyridylmethyl) benzimidazolylidene platinum(II)chloride, 3; and 1-benzyl-3-(2-pyridylmethyl) benzimidazolylidene platinum-(II)chloride, 4, have been synthesized, based on CN-donor proligands 1-alkyl-3-(2-pyridylmeth-yl)-benzimidazoliumchloride L1 and L2 [alkyl, R = –CH3 = L1; R = –CH2Ph = L2]. All the compounds have been synthesized and characterized by different spectroscopic methods. The Au(I) complexes 1 and 2 have been synthesized by a silver carbene transfer method. The solid-state structures of 1 and 3 have been determined by single crystal X-ray diffraction studies. The square planar Pt(II) complexes 3 and 4 show a reversible Pt(II)/Pt(IV) couple at 0.69 eV and 0.67 eV respectively. Among the complexes 1–4, complexes 1 and 3 have been used for cytotoxicity studies on the cell lines B16F10 (mouse melanoma), HepG2 (human hepatocarcinoma) and HeLa (human cervical carcinoma). IC50 values are compared with cisplatin, among 1 and 3, the Au(I) complex 1 is more effective than Pt(II) complex 3

    Expedient and Facile One-Pot Syntheses of Triazole-Linked Glycoconjugates under Microwave Irradiation

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    Effective microwave assisted one-pot syntheses of triazole- O-glycoconjugates and triazolylglycosides involving sequential glycosylation and click chemistry are described

    Multimeric Proteins: Its Adaptation and Regulation of Biological Activities

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    Proteins are one of the major structural and functional components of all living systems. The word protein is derived from the Greek word prôtos, meaning primary or first rank of importance and with good reason. More than half the dry weight of a cell is made up of proteins. They virtually control directly and indirectly all cellular functions. Each protein within the body is involved for a single or multiple specific functions. Some proteins are involved exclusively in structural support, while others are involved in bodily movement or defense against germs etc. Different structures of proteins define different functions. They may be round, globular shape (like hemoglobin whose spherical shape is useful for maneuvering through blood vessels), long (like collagen, whose stringy, strong rope like structure provides great support), strong (like spectrin c which protects erythrocytes from the powerful shearing forces they are exposed to) or elastic (like titin which controls muscle stretching and contraction)

    Corchorusin-D Directed Apoptosis of K562 Cells Occurs through Activationof Mitochondrial and Death Receptor Pathways and Suppression of AKT/PKB Pathway

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    Saponins, plant glycosides, have been reported to possess anti-cancer properties. Therefore the effect of corchorusin-D (COR-D), a compound isolated from Corchorus acutangulus, was studied in the chronic myelogenous leukemic cell line K562, using MTT assay, phase contrast and confocal microscopy, annexin V binding, cell cycle analysis and western blotting. COR-D inhibited cell growth in K562 cells and showed increased number of Annexin V FITC binding cells. Characteristic apoptotic changes, seen under phase contrast and confocal microscopes with accumulation of cells in the sub-G0 phase. The apoptosis involved drop in Bcl-2/Bax ratio, loss of mitochondrial membrane potential, release of cytochrome c in cytosol followed by activation of caspases 9 and 3, and cleavage of PARP. Down-regulation of pro-caspase 10 was observed along with formation of death-inducing signaling complex between TNF-R1 and TRADD. COR-D suppressed PDK1 and AKT with activation of MAP kinase family members ERK1/2, JNK1/2 and p38. Thus it induced apoptosis by activating mitochondrial and death receptor pathways and suppressing AKT/PKB rather than MAP kinase pathway. Significant enhancement of apoptosis, noted using specific inhibitors of ERK1/2, p38 and JNK1/2, suggests that COR-D can enhance apoptosis in K562 cells in combination with MAP kinase inhibitors

    Studies on the Structural and Energetic Aspects of the Interaction of Phenazinium Dyes with Deoxyribonucleic Acids

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    Nucleic acids are the central molecules in transmission, expression and conservation of genetic information. Nucleic acids were first discovered by Friedrich Miescher in 1871. This Swiss physician and biologist isolated various phosphate-rich chemicals, which he called nuclein (now nucleic acids), from the nucleic acids of white blood cells in 1869. After Miescher’s initial description in 1871, other scientists also started investigations into nuclein. However, for long after Miescher’s death, nuclein still received comparatively little attention. The role of DNA as the carrier of genetic information has been amply demonstrated beginning with the classic experiments of Avery1and Hershey and Chase2. Identifying DNA as the code of life was a remarkable discovery. However, uncovering the structure of DNA would prove to be the key to understand the role it plays in the formation of life. This structure has novel features which are of considerable biological interest. The classic example of how biological functions follow from biomolecular structures comes from the elucidation of the structure of DNA as a double helix by Watson and Crick3 using the X-ray fiber diffraction patterns generated by Franklin, Wilkins, and their associates.4,5 “We wish to suggest a structure for the salt of deoxyribonucleic acid (DNA)” –this was the opening remark in the paper published in the Nature magazine by Watson and Crick announcing discovery of the structure of DNA in the year 1953. This discovery is often said to mark the birth of modern molecular biology

    In situ Reversible Aggregation of Extracellular Cellobiase in the Filamentous Fungus Termitomyces clypeatus

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    Cellobiase (E.C. 3.2.1.21), is a widely exploited industrial glycosidase with a major role in biofuel industry. Its stability and shelf life are major bottlenecks in achieving a superior formulation for industry. In the filamentous fungus Termitomyces clypeatus, the enzyme is secreted in a co-aggregated form with sucrase; the separation of this co-aggregation results in substantial loss of the enzyme’s activity. The aim of the present study was to examine the mode of aggregation of the secreted cellobiase-sucrase coaggregate and its role in the stabilization of cellobiase. Transmission electron microscopy and dynamic light scattering of purified co-aggregates revealed reversible, concentration driven self-aggregation of the extracellular enzymes to form larger entities. However, the intracellular enzyme aggregates were rigid, non-interacting, and possessed a higher percentage of disulphide bonds. Circular dichroic spectra of the two coaggregates indicated no significant difference in secondary structures. Self-association increased the stability of extracellular aggregates towards heat by 1.5 fold, SDS by 4 ~ 7 fold, and chaotropic agents, by 1.5 ~ 2 fold, than the intracellular counterpart. The Km of extracellular aggregate varied between 0.29 and 0.45 mM as a result of spontaneous aggregation and disaggregation, whereas that of intracellular aggregate was 0.22 mM irrespective of its concentration status. In situ detection of cellobiase in native PAGE revealed two activity bands of the extracellular enzyme, which indicated a minimum of two active dissociated aggregate species, as compared to a single band for the intracellular enzyme. These studies are believed to improve the understanding of aggregation of the fungal glycosidases, which remains to be a blackbox, to increase the efficacy of these enzyme

    Elucidation of the Signaling Mechanisms Involved in the Subversion of Host Immune Response by Intracellular Parasite Leishmania Donovani

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    The intracellular parasite L. donovani has the unique capacity to survive and replicate inside host macrophages. Since this cell type is specialized for the destruction of invading pathogens and priming of the host immune response, Leishmania has had to evolve a range of sophisticated mechanisms to subvert normal macrophage function. This enables the parasite to evade the innate immune response and to divide within the phagolysosome of the infected macrophage, from where it can spread and propagate the disease within the host. There are multiple ways by which intracellular pathogens like Leishmania make use of host cell’s machinery in order to survive and replicate. One such mechanism is the distortion of host macrophage’s own signaling pathways to selectively repress or enhance the expression of various cytokines and microbicidal molecules and antigen presentation. Within the scope of this work, an attempt has been made to focus on the molecular mechanisms by which Leishmania can subvert host immune surveillance by altering the macrophage signal transduction machinery, thereby modulating the macrophage environment in its favour. Toll-like receptors (TLRs), which form an interface between mammalian host and microbe, play a key role in pathogen recognition and initiation of pro-inflammatory response thus stimulating antimicrobial activity and host survival. However, certain intracellular pathogens like Leishmania, can successfully manipulate the TLR signaling, thus hijacking the defensive strategies of the host. Despite the presence of lipophosphoglycan (LPG), a TLR2 ligand capable of eliciting host-defensive cytokine response, on the surface of Leishmania, the strategies adopted by the parasite to silence the TLR2-mediated pro-inflammatory response is not understood. Although the ability of Leishmania to inhibit inflammatory signaling pathways has been proposed as a virulence mechanism, the molecular events underlying this process remain still to be explored. The aim of this study was to determine the mechanism used by Leishmania to modulate TLR signaling cascade for its own favor

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