1925 research outputs found
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A New Look at Open Cluster Ngc 6520
Get PDFWe use CCD and photoelectric photometry with Stromgren filters along with medium resolution spectra to investigate NGC 6520, an open cluster very nearly in the direction of the galactic center. We find an age of 60 Myr, a distance of 2 kpc, and an average reddening E( b - y) = 0.295, which increases toward the south. The average heliocentric radial velocity of the B stars is - 29 km s(-1), while the velocity of the nearby Barnard 86 is about 0 ( heliocentric; - 11 km s(- 1) compared to the LSR). This velocity difference amounts to about 1.8 kpc since the cluster formed, implying that it is extremely doubtful NGC 6520 is related to Barnard 86
Are all species necessary to reveal ecologically important patterns?
Get PDFWhile studying ecological patterns at large scales, ecologists are often unable to identify all collections, forcing them to either omit these unidentified records entirely, without knowing the effect of this, or pursue very costly and time-consuming efforts for identifying them. These "indets" may be of critical importance, but as yet, their impact on the reliability of ecological analyses is poorly known. We investigated the consequence of omitting the unidentified records and provide an explanation for the results. We used three large-scale independent datasets, (Guyana/ Suriname, French Guiana, Ecuador) each consisting of records having been identified to a valid species name (identified morpho-species - IMS) and a number of unidentified records (unidentified morpho-species - UMS). A subset was created for each dataset containing only the IMS, which was compared with the complete dataset containing all morpho-species (AMS: = IMS + UMS) for the following analyses: species diversity (Fisher's alpha), similarity of species composition, Mantel test and ordination (NMDS). In addition, we also simulated an even larger number of unidentified records for all three datasets and analyzed the agreement between similarities again with these simulated datasets. For all analyses, results were extremely similar when using the complete datasets or the truncated subsets. IMS predicted ≥91% of the variation in AMS in all tests/analyses. Even when simulating a larger fraction of UMS, IMS predicted the results for AMS rather well. Using only IMS also out-performed using higher taxon data (genus-level identification) for similarity analyses. Finding a high congruence for all analyses when using IMS rather than AMS suggests that patterns of similarity and composition are very robust. In other words, having a large number of unidentified species in a dataset may not affect our conclusions as much as is often thought
Temporal variability is a personalized feature of the human microbiome
Get PDFBackground: It is now apparent that the complex microbial communities found on and in the human body vary across individuals. What has largely been missing from previous studies is an understanding of how these communities vary over time within individuals. To the extent to which it has been considered, it is often assumed that temporal variability is negligible for healthy adults. Here we address this gap in understanding by profiling the forehead, gut (fecal), palm, and tongue microbial communities in 85 adults, weekly over 3 months. Results: We found that skin (forehead and palm) varied most in the number of taxa present, whereas gut and tongue communities varied more in the relative abundances of taxa. Within each body habitat, there was a wide range of temporal variability across the study population, with some individuals harboring more variable communities than others. The best predictor of these differences in variability across individuals was microbial diversity; individuals with more diverse gut or tongue communities were more stable in composition than individuals with less diverse communities. Conclusions: Longitudinal sampling of a relatively large number of individuals allowed us to observe high levels of temporal variability in both diversity and community structure in all body habitats studied. These findings suggest that temporal dynamics may need to be considered when attempting to link changes in microbiome structure to changes in health status. Furthermore, our findings show that, not only is the composition of an individual's microbiome highly personalized, but their degree of temporal variability is also a personalized feature
Impact of large-scale climate extremes on biospheric carbon fluxes: An intercomparison based on MsTMIP data.
Get PDFUnderstanding the role of climate extremes and their impact on the carbon (C) cycle is increasingly a focus of Earth system science. Climate extremes such as droughts, heat waves, or heavy precipitation events can cause substantial changes in terrestrial C fluxes. On the other hand, extreme changes in C fluxes are often, but not always, driven by extreme climate conditions. Here we present an analysis of how extremes in temperature and precipitation, and extreme changes in terrestrial C fluxes are related to each other in 10 state-of-the-art terrestrial carbon models, all driven by the same climate forcing. We use model outputs from the North American Carbon Program Multi-scale Synthesis and Terrestrial Model Intercomparison Project (MsTMIP). A global-scale analysis shows that both droughts and heat waves translate into anomalous net releases of CO2 from the land surface via different mechanisms: Droughts largely decrease gross primary production (GPP) and to a lower extent total respiration (TR), while heat waves slightly decrease GPP but increase TR. Cold and wet periods have a smaller opposite effect. Analyzing extremes in C fluxes reveals that extreme changes in GPP and TR are often caused by strong shifts in water availability, but for extremes in TR shifts in temperature are also important. Extremes in net CO2 exchange are equally strongly driven by deviations in temperature and precipitation. Models mostly agree on the sign of the C flux response to climate extremes, but model spread is large. In tropical forests, C cycle extremes are driven by water availability, whereas in boreal forests temperature plays a more important role. Models are particularly uncertain about the C flux response to extreme heat in boreal forests
Border Songs: Bringing the Immigration Crisis to the Classroom with Music
Get PDFDuring fall semester of 2010, I began taking students on five-day field trips to the Arizona–Mexico
border. One part of these trips involves meeting with sound sculptor Glenn Weyant, who plays the border
wall as a musical instrument. Weyant attaches contact microphones to the wall and plays it, sometimes
bowing the steel structure with a cello bow, and other times playing it rhythmically with what he calls
“instruments of mass percussion.
Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity
Get PDFMicrobial communities typically contain many rare taxa that make up the majority of the observed membership, yet the contribution of this microbial “rare biosphere” to community dynamics is unclear. Using 16S rRNA amplicon sequencing of 3,237 samples from 42 time series of microbial communities from nine different ecosystems (air; marine; lake; stream; adult human skin, tongue, and gut; infant gut; and brewery wastewater treatment), we introduce a new method to detect typically rare microbial taxa that occasionally become very abundant (conditionally rare taxa [CRT]) and then quantify their contributions to temporal shifts in community structure. We discovered that CRT made up 1.5 to 28% of the community membership, represented a broad diversity of bacterial and archaeal lineages, and explained large amounts of temporal community dissimilarity (i.e., up to 97% of Bray-Curtis dissimilarity). Most of the CRT were detected at multiple time points, though we also identified “one-hit wonder” CRT that were observed at only one time point. Using a case study from a temperate lake, we gained additional insights into the ecology of CRT by comparing routine community time series to large disturbance events. Our results reveal that many rare taxa contribute a greater amount to microbial community dynamics than is apparent from their low proportional abundances. This observation was true across a wide range of ecosystems, indicating that these rare taxa are essential for understanding community changes over time. Importance: Microbial communities and their processes are the foundations of ecosystems. The ecological roles of rare microorganisms are largely unknown, but it is thought that they contribute to community stability by acting as a reservoir that can rapidly respond to environmental changes. We investigated the occurrence of typically rare taxa that very occasionally become more prominent in their communities (“conditionally rare”). We quantified conditionally rare taxa in time series from a wide variety of ecosystems and discovered that not only were conditionally rare taxa present in all of the examples, but they also contributed disproportionately to temporal changes in diversity when they were most abundant. This result indicates an important and general role for rare microbial taxa within their communities
Redaction of sensitive data in the publication of dual use research of concern
Get PDFEditorial. The publication of scientific information that derives from dual use research of concern (DURC) poses major problems for journals because it brings into conflict the benefits of free access to data and the need to prevent misuse of that information by others. Recently, a group of authors and a major scientific journal addressed the issue of publishing information on a newly discovered, highly lethal toxin that can be delivered to large populations and for which there are no available countermeasures. The journal addressed this conflict by permitting the redaction of information that is normally considered essential for publication. This action establishes a precedent for redaction of sensitive data that also provides an example of responsible scientific publishing. However, this precedent leaves many questions unanswered and suggests a need for a discussion by all stakeholders of scientific information so as to derive normative standards for the publication of DURC
Pinyon pine mortality alters communities of ground-dwelling arthropods
Get PDFWe documented the effect of drought-induced mortality of pinyon pine (Pinus edulis Engelm.) on communities of ground-dwelling arthropods. Tree mortality alters microhabitats utilized by ground-dwelling arthropods by increasing solar radiation, dead woody debris, and understory vegetation. Our major objectives were to determine (1) whether there were changes in community composition, species richness, and abundance of ground-dwelling arthropods associated with pinyon mortality and (2) whether specific habitat characteristics and microhabitats accounted for these changes. We predicted shifts in community composition and increases in arthropod diversity and abundance due to the presumed increased complexity of microhabitats from both standing dead and fallen dead trees. We found significant differences in arthropod community composition between high and low pinyon mortality environments, despite no differences in arthropod abundance or richness. Overall, 22% (51 taxa) of the arthropod community were identified as being indicators of either high or low mortality. Our study corroborates other research indicating that arthropods are responsive to even moderate disturbance events leading to changes in the environment. These arthropod responses can be explained in part due to the increase in woody debris and reduced canopy cover created by tree mortality
Fact sheet: Effects of tree cutting and fire on understory vegetation in mixed conifer forests.
Get PDFThe semen microbiome and its relationship with local immunology and viral load in HIV infection
Get PDFSemen is a major vector for HIV transmission, but the semen HIV RNA viral load (VL) only correlates moderately with the blood VL. Viral shedding can be enhanced by genital infections and associated inflammation, but it can also occur in the absence of classical pathogens. Thus, we hypothesized that a dysregulated semen microbiome correlates with local HIV shedding. We analyzed semen samples from 49 men who have sex with men (MSM), including 22 HIV-uninfected and 27 HIV-infected men, at baseline and after starting antiretroviral therapy (ART) using 16S rRNA gene-based pyrosequencing and quantitative PCR. We studied the relationship of semen bacteria with HIV infection, semen cytokine levels, and semen VL by linear regression, non-metric multidimensional scaling, and goodness-of-fit test. Streptococcus, Corynebacterium, and Staphylococcus were common semen bacteria, irrespective of HIV status. While Ureaplasma was the more abundant Mollicutes in HIV-uninfected men, Mycoplasma dominated after HIV infection. HIV infection was associated with decreased semen microbiome diversity and richness, which were restored after six months of ART. In HIV-infected men, semen bacterial load correlated with seven pro-inflammatory semen cytokines, including IL-6 (p = 0.024), TNF-α (p = 0.009), and IL-1b (p = 0.002). IL-1b in particular was associated with semen VL (r(2) = 0.18, p = 0.02). Semen bacterial load was also directly linked to the semen HIV VL (r(2) = 0.15, p = 0.02). HIV infection reshapes the relationship between semen bacteria and pro-inflammatory cytokines, and both are linked to semen VL, which supports a role of the semen microbiome in HIV sexual transmission