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Contemporary natural selection and potential for evolutionary change in maritime pine (P. pinaster Aiton), a keystone forest tree
No full textThe dataset "Pinaster_genotypes_Lacanau&Tocchi_10652SNPs.xlsx" contains individual genetic information and was produced by a consortium of European research Intitutes. For the data collection, needles were sampled from a total of 1,500 individuals from 2 maritime pine populations located in French (Lacanau) and Italian (Tocchi) Genetic Conservation Units (GCUs).
10,652 SNPs were genotyped from the multispecies 4TREE SNPs chip (chip produced within the framework of the B4est project). This dataset was used to carry out a quantitative genetics and evolutionary biology study (i.e., parentage/mating model analyses and heritability estimates).
The dataset "WD_Lacanau-Tocchi.xlsx" contains individual adult tree relative wood density measured in situ using a SC-650 resistograph (Rinntech, Heidelberg, Germany). Median values were calculated for each tree from individual density profiles using the R package densitR (https://github.com/krajnc/densitr; Krajnc, 2020).
The dataset "" contains individual adult tree fitness values (effective fecundity in the form of the number of established offspring computed using MEMM and CERVUS), standardized phenotypic traits (growth and functional traits) measured and predicted using in-situ direct assessment, drone flights and near-infrared spectroscopy for each of the adult trees in Lacanau and Tocchi populations and covariates used in this study (data paper for phenotypic data to be published soon). These datasets were used to compute selection gradient and heritability estimates
Replication data for: Outsourcing Decarbonization? How Trade Shaped France’s Carbon Footprint (2000-14)
No full textThis study examines the evolution of France's carbon footprint from 2000 to 2014, with a particular focus on the role of international trade. During this period, France's territorial emissions decreased by 18%, yet its consumption-based footprint declined by only 5%. This modest reduction reflects an increase in emissions embedded in imports, which grew from 45% to 54% of the total. Employing a novel structural decomposition analysis, we disentangle the contributions of scale, composition, and technique effects from a consumption perspective. Our approach advances traditional methods by explicitly distinguishing between domestic and foreign influences and by separately analyzing trade openness and the geographic reallocation of trade flows. The results underscore the dominance of the technique effect in reducing emissions (-28%), driven primarily by efficiency improvements abroad. However, the geographic composition effect led to a substantial increase in emissions (+18%), especially due to shifts toward more carbon-intensive trading partners prior to 2008. This pattern—characterized by a growing reliance on foreign improvements for emission reductions—likely foreshadows developments in other developed economies as domestic decarbonization advances. It highlights the need for greater coordination between trade and climate policies
MilkOligoCorpus, a rich semantic annotated resource for milk oligosaccharide complex information extraction
No full textThe MilkOligoCorpus is a dataset of 30 Pubmed abstracts and full-text extracts from scientific articles on the composition of milk oligosaccharides in mammalian species, manually annotated for training and evaluating information extraction tools. This corpus is designed to support the development and assessment of tools for named entity recognition, entity linking and relation extraction to extract the variability of milk oligosaccharides profiles.
Named entity linking is essential for integrating information from diverse sources by mapping entity mentions to standard categories and associating them with unique identifiers. Thus, along with the corpus annotation we developed four semantic resources to address the absence of existing ontologies for several entities: (i) the Female parity thesaurus, (ii) the sample thesaurus, (iii) the MO methods thesaurus, (iv) the Oligo type thesaurus available at https://doi.org/10.57745/RA5DAC.
An annotation schema was also developed, that identifies the entities of interest and establishes relations between them. This annotation schema serves as the foundation for the manual annotations along with guidelines, a 66-pages document that dictates the instructions on how to perform the annotations, available in the repository Z.
This archive includes: (i) the HoloOligo corpus dataset, (ii) the list of the document annotated in the HoloOligo corpus, (iii) the three thesaurus required for the manual annotation, which are not available elsewhere, (iv) the annotation schema.
An article detailing the development of the annotation schema and the creation of the gold standard corpus will be submited to PLOS One
Effects of chill and heat conditions in different years on the genetic determinism of flowering stages in the olive tree
No full textAdditional files associated to the draft paper “Effects of chill and heat conditions in different years on the genetic determinism of flowering stages in the olive tree”
Indicateurs des changements par niveaux de réchauffement TRACC issus des projections hydrologiques Explore2 pour le modèle GRSD (référence 1976-2005)
No full textIndicateurs des changements par niveaux de réchauffement TRACC issus des débits journaliers simulés par le modèle hydrologique GRSD pour l'ensemble des projections climatiques Explore2 sous RCP 8.5. Ces fichiers résultent de l'agrégation temporelle des simulations hydrologiques sous runs historiques (avant 2005) et des projections hydrologiques (post 2005), fichiers NetCDF disponibles au téléchargement dans la collection Explore2 - Projections hydrologiques.
Ce dépôt regroupe un tableau par indicateur, niveau de réchauffement et chaîne de simulation, c'est-à-dire, couple GCM/RCM et modèle hydrologique HM. Ces données sont brutes et contiennent donc des chaînes de projections jugées aberrantes / horsains qu'il est possible de filtrer grâce à des métadonnées supplémentaires. Pour des raisons techniques, ces indicateurs sont regroupés par dossiers compressés selon les différentes phases du régime hydrologique.
La description des chaines de modélisation du climat et celle des modèles hydrologiques sont, respectivement, disponibles dans le rapport https://doi.org/10.57745/PUR7ML et dans les annexes du rapport https://doi.org/10.57745/S6PQXD. Retrouvez le diagnostic des modèles hydrologiques résumé à l'échelle des régions hydrologiques dans les fiches téléchargeables ici : https://doi.org/10.57745/DMFUXW.
Définition des narratifs hydrologiques : L'ensemble des descriptions des narratifs hydrologiques définis dans le cadre de la TRACC par niveaux de réchauffement et secteurs hydrographiques est défini ici : https://doi.org/10.57745/KAHIWJ.
Métadonnées supplémentaires : Récapitulatif de l'ensemble des indicateurs hydrologiques : https://doi.org/10.57745/JVNHQL Récapitulatif de l'ensemble des chaînes de simulation : https://doi.org/10.57745/R6HG5X Description de l'ensemble des points de simulation : https://doi.org/10.57745/UTKWR5 Liste des chaînes de modélisation jugées aberrantes / horsains : https://doi.org/10.57745/YZNENQ Récapitulatif des années pivots utilisées pour la TRACC : https://doi.org/10.57745/DCOQM6
Décomposition des chaînes de caractères formant le nom des fichiers parquet, séparées par des "_" : {1} Indicateur : Le nom de l’indicateur, du type de statistique calculée {2} Échantillonnage : Échantillonnage temporel sur laquelle est calculé l’indicateur → {1}_{2} Variable : Variable résultante d'un indicateur temporellement contextualisé {3} RWL : Niveau de réchauffement TRACC (RWL-(20|27|40)) → {1}_{2}_{3} Changement : Changement d'une variable pour un niveau de réchauffement TRACC par rapport à une période de référence, défini dans le récapitulatif des indicateurs hydrologiques {4} EXP : Identifiant de l’expérience historique (post 2005) ou future (post 2005) {5} GCM : Identifiant du GCM forçeur {6} RCM : Identifiant du RCM {7} BC : Identifiant de la méthode de correction de biais statistique {8} HM : Identifiant du modèle hydrologique {9} Référence : Période de référence (ref-YYYYMMDD-YYYYMMDD)
Les colonnes des fichiers parquet sont : EXP : Voir ci-dessus GCM : Voir ci-dessus RCM : Voir ci-dessus BC : Voir ci-dessus HM : Voir ci-dessus code : Code à 10 caractères du point de simulation fourni dans la description des points de simulation *Changement* : Voir ci-dessus
Retrouvez des scripts d'aide pour utiliser ces données parquet
Downscaled climate projections (1971-2100) for the Ain-Albarine river basin (France)
No full textDownscaled projections of temperature, precipitation, and reference evapotranspiration for the Ain river basin (which includes the Albarine DRN).
3 SSP scenarios and 5 climate models
European biodiversity data for fishes in the DRYvER project
No full textAbundance, density, total length, and biomass of all fish taxa collected in the six European DRNs, together with associated environmental data collected during fish sampling. Environmental and background variables include sampled area, mean wetted width, and reach length
More diverse temperate forests are more resistant against non-native insect herbivores
No full textR-project containing raw data and codes used in the paper "More diverse temperate forests are more resistant against non-native insect herbivores
Point Cloud Data of Beads and Parts Printed using Multi-Axis Silicone Liquid Deposition Modeling.
No full textThis dataset contains point cloud sets acquired on beads and parts printed in multi-axis LDM silicone.
The points measured on the beads reveal the variable geometry of the central part of beads printed with different printing parameters and nozzle angulations.
The points concerning the parts show the impact of using triangular and flattened beads on the surfaces of a multi-axis printed part, which can be compared with two other Cartesian printed parts.
This dataset highlighted the change in bead shape as a function of printing parameters and nozzle angulation. The observations made at the bead scale could be applied to the printing of a whole part, to analyze their impact on the condition of its surfaces.
This dataset is offered to the scientific community for the creation of a database or for analysis purposes
Supplementary data for Falentin et al. 2025: Tables containing Resistance Gene Analogs (RGA) identified in Brassica rapa and B. oleracea genomes
No full textText file containing the gene names of the Resistance Gene Analogs identified in all genome assemblies generated in this study and those used for comparison (Table S01), the RGA genes that were unique to our newly assembled genotypes compared to others from the same morphotype (B. oleracea cv. C102: table S03; B. oleracea cv. ND124: table S05; B. oleracea ‘Bos01’: table S07) or from previous genome assemblies (B. rapa cv. R500: table S9; B. rapa cv Wutacai: tables S11). The orthologous relationships of Resistance Gene Analogs between our newly assembled genotypes and those from the same morphotype or from the previously assembled genome are also given (B. oleracea cv. C102: table S02; B. oleracea cv. ND124: table S04; B. oleracea ‘Bos01’: table S06; B. rapa cv. R500: table S08; B. rapa cv Wutacai: tables S10)