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Quantitative Modeling of Polaritonic Emission Using the Source Term Method
No full textThe raw data for figures in the article "Quantitative Modeling of Polaritonic Emission Using the Source Term Method" by Rahul Bhuyan, Maksim Lednev, Clara Schäfer, Johannes Feist, and Karl Börjesson are here stored. The naming of files follows the Figure numbering in the article.Rådata till figurer i artikeln "Quantitative Modeling of Polaritonic Emission Using the Source Term Method" av Rahul Bhuyan, Maksim Lednev, Clara Schäfer, Johannes Feist och Karl Börjesson finns här lagrade. Numreringen av filer följer numreringen av figurer i artikeln
En 50 m spatial representation av täckdikade jordbruksarealer i centrala och södra Sverige
No full textThroughout increased expansion of farmland in Sweden, drainage have been an important part for land acquisition to keep soil moisture levels sufficient for land accessibility and crop production. Increased magnitude and frequency of extreme weather events such as high precipitation events and hydrological floods have already been seen affecting crop production in recent years. Hence putting pressure on increasing demand for thorough drainage systems.
While data on open ditch- and regional drainage systems is readily available, data on subsurface drainage is scarce. Hence, this dataset presents the first spatial location of estimated tile-drained fields in Southern-central Sweden, based on county-wise statistics at 50*50 m resolution.
This dataset show spatial coverage of probable subsurface drained agricultural area in central to southern Sweden. The dataset is created by combining slope and soil drainage class based on clay content, and the area limited by statistics from 2016 over county wise determined area of subsurface drainage.
The documentation contains:
README: Description of maps and references on which the dataset is based; which files are included and their contents; references to method description and compiled results from the dataset.
SubsurfaceDrainage_Dataset-description_2025-06-23: Describes the purpose of the dataset's origin, method and validation of results.
CountywiseTileDrainArea_Code: R-code used for the creation of the tile drainage maps per county included in this dataset.Genom den ökade expansionen av jordbruksmark i Sverige har dränering varit en viktig del av markförvärv för att hålla markfuktigheten tillräcklig för marktillgänglighet och grödoproduktion. Ökad omfattning och frekvens av extrema väderhändelser, såsom hög nederbörd och hydrologiska översvämningar, har redan setts påverka grödoproduktionen under senare år. Detta har satt press på den ökande efterfrågan på grundliga dräneringssystem.
Medan data om öppna diken och regionala dräneringssystem är lättillgängliga, är data om markdränering knapphändiga. Därför presenterar denna datauppsättning den första geografiska platsen för uppskattade tegeldränerade fält i södra och centrala Sverige, baserat på länsvis statistik med 50*50 m upplösning.
Detta dataset beskriver en spatial förmodad utbredning av täckdikad jordbruksareal i centrala till södra Sverige framtaget genom kombination av lutning och dräneringsklass baserad på lerhalt och avgränsad av statistik över täckdikad areal från 2016.
Dokumentationen innehåller:
README: Beskrivning av kartor och referenser som datasetet baserats på; vilka filer som ingår och deras innehåll; referenser till metodbeskrivning och sammanställda resultat från datasetet.
SubsurfaceDrainage_Dataset-description_2025-06-23: Beskriver syftet med datasetets ursprung, metod samt valideringsresultat.
CountywiseTileDrainArea_Code: R-kod för framtagandet av de länsvisa dräneringskartor som utgör det publicerade datasetet
Data set for the Spectrochimica Acta Part A manuscript with the title "The structure of amyloid-beta(1-42) oligomers in membrane-mimetic environments"
No full textData published here is the basis for the manuscript for Spectrochimica Acta Part A with the title:
The structure of amyloid-beta(1-42) oligomers in membrane-mimetic environments.
Here, we demonstrate that Aβ42 oligomers preserve their β-sheet structure in aqueous solution and in a membrane-mimicking environment consisting of either anionic or zwitterionic membranes. Structure and Aβ42 aggregation kinetics were hardly affected by the presence of lipids, showing only slight effects observed during the initial oligomer formation at low temperatures. Our isotope-edited infrared experiments reveal that the backbone carbonyl of V18 residue is located in β-sheets in the presence and in the absence of lipids. Such insensitivity of Aβ42 to the presence of lipid vesicles suggests a distinct aggregation behaviour of Aβ42, compared to Aβ40.
The data is in .DPT format, which can be viewed using any text editing program
Supplementary Fig. 9h | Dynamic cultures of motor neurons
No full textThis item is part of the Figshare Project:
Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution (https://su.figshare.com/projects/Early_mitochondrial_dysfunction_revealed_across_FUS-_and_TARDBP-ALS_at_single_cell_resolution/163252)
From Data Availability Statement for the paper in Nature Communications entitled:
Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS
"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The C9orf72-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.
[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."
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[Item specific description:]
Longitudinal brightfield microscopy of motor neuron cultures.
These files contain brightfield images of motor neuron cultures over time.
Microscopy images are assembled as timelines in PPTX and PDF files
Supplementary Fig. 5a | FUS localization in ALS motor neurons (c-terminal antibody)
No full textThis item is part of the Figshare Project:
Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution
From Data Availability Statement for the forthcoming paper in Nature Communications entitled:
Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS
"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The C9orf72-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.
[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."
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[Item specific description:]
FUS localization in PSC-derived motor neurons with ALS mutations.
These files are confocal images analyzing FUS localisation in iPSC-derived ALS motor neurons.
The file format is .czi, through the ZEN software (Zeiss). Zeiss recommends using ImageJ and the ImageJ-based Fiji software package (https://imagej.net/software/fiji/) .
Information about the microscopy file format CZI can be found here: https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.htm
Supplementary Fig. 5b | FUS localization in ALS motor neurons (P525 site-specific antibodies)
No full textThis item is part of the Figshare Project:
Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution
From Data Availability Statement for the paper in Nature Communications entitled:
Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS
"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The C9orf72-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.
[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."
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[Item specific description:]
FUS localization in motor neurons using FUS P525 site-specific antibodies
These files are confocal images analyzing FUS localisation in iPSC-derived ALS motor neurons.
The file format is .czi, through the ZEN software (Zeiss). Zeiss recommends using ImageJ and the ImageJ-based Fiji software package (https://imagej.net/software/fiji/) .
Information about the microscopy file format CZI can be found here: https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.htm
Fig. 6 | Tracking mitochondria in ALS motor axons
No full textThis item is part of the Figshare Project:
Early mitochondrial dysfunction revealed across FUS- and TARDBP-ALS at single cell resolution
From Data Availability Statement for the paper in Nature Communications entitled:
Single-cell RNA sequencing reveals early mitochondrial dysfunction unique to motor neurons shared across FUS- and TARDBP-ALS
"We have deposited all raw and processed RNA sequencing data generated in this study on the NCBI Gene Expression Omnibus (GEO) under the accession number GSE226482. The C9orf72-ALS bulk RNA sequencing data was retrieved directly from the authors of the study.
[Items under this Figshare Project contain:] "Scans of fluorescent western blots, raw imaging files from confocal microscopy, the analysis files from Opera Phenix, qPCR data sets, and Seahorse assay result files."
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[Item specific description:]
Motor neurons were generated from iPSC by differentation according to Nijssen et al, 2019. BioProtocol (PMID: 33654821). Embryoid bodies containing motor neuron progenitors were attached whole at day 9, followed by maturation during which axons grow radially outward.
From day 27 onwards and as indicated, mitochondria were labelled with TMRM for 30 min prior to live cell imaging to record time-lapses.
These files are images and time-lapse videos of mitochondrial movement in iPSC-derived motor axons based on TMRM-stained mitochondria. The file format is .czi, through the ZEN software (Zeiss). Zeiss recommends using ImageJ and the ImageJ-based Fiji software package (https://imagej.net/software/fiji/) .
For analysis of mitochondrial movement, individual mitochondria were traced in Fiji using the TrackMate 7 extension with the StarDist detector and a Sparse LAP tracker (as in ‘mitotracker.py’). The mitochondrial traces were then annotated and analysed in R (version 4.2.0) using our custom package ‘mitotrackR’ (https://github.com/schwi24/mitotrackR).
Information about the microscopy file format CZI can be found here: https://www.zeiss.com/microscopy/en/products/software/zeiss-zen/czi-image-file-format.htm
FORWARD: Ett dataset av en skotare framförd i svår terräng
No full textThe FORWARD dataset comprises detailed sensor and log data from a Komatsu cut-to-length forwarder, collected during operations in challenging terrain as well as on gravel roads at two Swedish harvest sites. Sensor instrumentation includes RTK-GNSS for precise positioning, a 360-degree camera for visual documentation, operator seat vibration sensors, CAN-bus signal logging, and multiple IMUs mounted on the machine. The dataset provides time-stamped vehicle positions with centimeter-level accuracy, and machine event logs sampled at 5 Hz, covering variables such as driving speed, fuel consumption, and crane activity. Additionally, high resolution terrain data from helicopter-borne laser scanning (1500 points/m²) is included, along with StanForD production log files containing detailed event records for each work session.Datasetet FORWARD omfattar detaljerade sensor‑ och loggdata från en Komatsuskotare, insamlade under drift i utmanande terräng samt på grusvägar på två svenska avverkningsplatser. Sensorer inkluderar RTK‑GNSS för exakt positionering, en 360‑graderskamera för visuell dokumentation, vibrationssensorer i förarsätet, CAN‑bus signalregistrering och flera IMU‑enheter monterade på maskinen. Datat innehåller tidsstämplade fordonspositioner med centimeterprecision samt loggade maskinvariabler med ett samplingsintervall på 5 Hz, exempelvis körhastighet, bränsleförbrukning och krananvändning. Dessutom ingår högupplösta terrängdata från helikopterburen laserskanning (1500 punkter/m²) samt StanForD‑produktionsloggfiler med detaljerade händelseregistreringar för arbetet
Lake ice and snow depth/thickness from Almbergasjön
No full textObservation of ice and snow depth and thickness of the SITES Water lakes.
Abisko Scientific Research Station (2025). Lake ice and snow depth/thickness from Almbergasjön, 2017-11-13–2024-01-11 [Data set]. Swedish Infrastructure for Ecosystem Science (SITES). https://hdl.handle.net/11676.1/e9bB9zkPbNrZgzPsyAJ4o-k
ETC L2 Meteo from Hyltemossa
No full textHalf-hourly meteorological variables with values aggregated spatially (e.g. one single soil temperature value per layer) calculated by the ICOS ETC starting from the single sensor half-hourly measurements.
Heliasz, M., Kljun, N., Biermann, T., Holst, J., Holst, T., Kornacher, P., Linderson, M., Molder, M., Rinne, J. (2025). ETC L2 Meteo from Hyltemossa, 2017-12-31–2025-09-30, ICOS RI, https://hdl.handle.net/11676/GnGnEIM0aOGlxuHwMKeEUEt