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HI-NESS: a family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein
Get PDFThe interplay between three-dimensional chromosome organisation and genomic processes such as replication and transcription necessitates in vivo studies of chromosome dynamics. Fluorescent organic dyes are often used for chromosome labelling in vivo. The mode of binding of these dyes to DNA cause its distortion, elongation, and partial unwinding. The structural changes induce DNA damage and interfere with the binding dynamics of chromatin-associated proteins, consequently perturbing gene expression, genome replication, and cell cycle progression. We have developed a minimally-perturbing, genetically encoded fluorescent DNA label consisting of a (photo-switchable) fluorescent protein fused to the DNA-binding domain of H-NS — a bacterial nucleoid-associated protein. We show that this DNA label, abbreviated as HI-NESS (H-NS-based indicator for nucleic acid stainings), is minimally-perturbing to genomic processes and labels chromosomes in eukaryotic cells in culture, and in zebrafish embryos with preferential binding to AT-rich chromatin
Cylindrical Metalens for Generation and Focusing of Free-Electron Radiation
Get PDFMetasurfaces constitute a powerful approach to generate and control light by engineering optical material properties at the subwavelength scale. Recently, this concept was applied to manipulate free-electron radiation phenomena, rendering versatile light sources with unique functionalities. In this Letter, we experimentally demonstrate spectral and angular control over coherent light emission by metasurfaces that interact with freeelectrons under grazing incidence. Specifically, we study metalenses based on chirped metagratings that simultaneously emit and shape Smith-Purcell radiation in the visible and near-infrared spectral regime. In good agreement with theory, we observe the far-field signatures of strongly convergent and divergent cylindrical radiation wavefronts using in situ hyperspectral angle-resolved light detection in a scanning electron microscope. Furthermore, we theoretically explore simultaneous control over the polarization and wavefront of Smith-Purcell radiation via a split-ring-resonator metasurface, enabling tunable operation by spatially selective mode excitation at nanometer resolution. Our work highlights the potential of merging metasurfaces with free-electron excitations for versatile and highly tunable radiation sources in wide-ranging spectral regimes
Erratum: Author Correction: A Lab-in-a-Fiber optofluidic device using droplet microfluidics and laser-induced fluorescence for virus detection (Scientific reports (2022) 12 1 (3539))
No full textCorrection to: Scientific Reports https://doi.org/10.1038/s41598-022-07306-0, published online 03 March 2022
The original version of this Article contained an error in the spelling of the author Ruben R. G. Soares, which was incorrectly given as Ruben G. Soares
Interplay of Leakage Radiation and Protection in Topological Photonic Crystal Cavities
Get PDFThe introduction of topological concepts to the design of photonic crystal cavities holds great promise for applications in integrated photonics due to the prospect of topological protection. This study examines the signatures of topological light confinement in the leakage radiation of 2D topological photonic crystal cavities. The cavities are implemented in an all-dielectric platform that features the photonic quantum spin Hall effect at telecom wavelengths and supports helical edge states that are weakly coupled to the radiation continuum. The modes of resonators scaling down to single point defects in the surrounding bulk lattice are characterized via spectral position and multipolar nature of the eigenstates. The mode profiles in real and momentum space are mapped using far-field imaging and Fourier-spectropolarimetry, revealing how certain properties of the cavity modes reflect on their origin in the topological bandstructure. This includes band-inversion-induced confinement and inverted scaling of mode spectra for trivial and topological defect cavities. Furthermore, hallmarks of topological protection in the loss rates are demonstrated, which are largely unaffected by cavity shape and size. The results constitute an important step toward the use of radiative topological cavities for on-chip confinement of light, control of emitted wave fronts, and enhancement of light–matter interactions
On-chip distribution of quantum information using traveling phonons
Get PDFDistributing quantum entanglement on a chip is a crucial step toward realizing scalable quantum processors. Using traveling phonons—quantized guided mechanical wave packets—as a medium to transmit quantum states is now gaining substantial attention due to their small size and low propagation speed compared to other carriers, such as electrons or photons. Moreover, phonons are highly promising candidates to connect heterogeneous quantum systems on a chip, such as microwave and optical photons for long-distance transmission of quantum states via optical fibers. Here, we experimentally demonstrate the feasibility of distributing quantum information using phonons by realizing quantum entanglement between two traveling phonons and creating a time-bin–encoded traveling phononic qubit. The mechanical quantum state is generated in an optomechanical cavity and then launched into a phononic waveguide in which it propagates for around 200 micrometers. We further show how the phononic, together with a photonic qubit, can be used to violate a Bell-type inequality
Photothermal Circular Dichroism Measurements of Single Chiral Gold Nanoparticles Correlated with Electron Tomography
Get PDFChemically synthesized metal nanoparticles with morphological chiral features are known to exhibit strong circular dichroism. However, we still lack understanding of the correlation between morphological and chiroptical features of plasmonic nanoparticles. To shed light on that question, single nanoparticle experiments are required. We performed photothermal circular dichroism measurements of single chiral and achiral gold nanoparticles and correlated the chiroptical response to the 3D morphology of the same nanoparticles retrieved by electron tomography. In contrast to an ensemble measurement, we show that individual particles within the ensemble display a broad distribution of strength and handedness of circular dichroism signals. Whereas obvious structural chiral features, such as helical wrinkles, translate into chiroptical ones, nanoparticles with less obvious chiral morphological features can also display strong circular dichroism signals. Interestingly, we find that even seemingly achiral nanoparticles can display large g-factors. The origin of this circular dichroism signal is discussed in terms of plasmonics and other potentially relevant factors
A gastruloid model of the interaction between embryonic and extra-embryonic cell types
Get PDFStem-cell derived in vitro systems, such as organoids or embryoids, hold great potential for modeling in vivo development. Full control over their initial composition, scalability, and easily measurable dynamics make those systems useful for studying specific developmental processes in isolation. Here we report the formation of gastruloids consisting of mouse embryonic stem cells (mESCs) and extraembryonic endoderm (XEN) cells. These XEN-enhanced gastruloids (XEGs) exhibit the formation of neural epithelia, which are absent in gastruloids derived from mESCs only. By single-cell RNA-seq, imaging, and differentiation experiments, we demonstrate the neural characteristics of the epithelial tissue. We further show that the mESCs induce the differentiation of the XEN cells to a visceral endoderm-like state. Finally, we demonstrate that local inhibition of WNT signaling and production of a basement membrane by the XEN cells underlie the formation of the neuroepithelial tissue. In summary, we establish XEGs to explore heterotypic cellular interactions and their developmental consequences in vitro
A Fluidic Relaxation Oscillator for Reprogrammable Sequential Actuation in Soft Robots
Get PDFDespite exciting developments in soft robotics, fully autonomous systems remain elusive. Fluidic circuits could enable fully embedded control of soft robots without using electronics. In this work, we introduce a simple and compact soft valve with intentional hysteresis, analogous to an electronic relaxation oscillator. By integrating the valve with a soft actuator, we transform a continuous inflow to cyclic activation. Importantly, we show that our circuits can activate up to five actuators in various sequences and that we can physically reprogram the activation order by varying the (initial) conditions in the fluidic circuit. Moreover, we show the feasibility of our approach under more realistic conditions by building a four-legged robot. Our work paves the way toward fully autonomous soft robots that can interact with their environment to reprogram their behavior, e.g., to trigger targeted drug release inside our body or to change gait to move past obstacles
Sequential snapping and pathways in a mechanical metamaterial
Get PDFMaterials that feature bistable elements, hysterons, exhibit memory effects. Often, these hysterons are difficult to observe or control directly. Here, we introduce a mechanical metamaterial in which slender elements, interacting with pushers, act as mechanical hysterons. We show how we can tune the hysteron properties and pathways under cyclic compression by the geometric design of these elements and how we can tune the pathways of a given sample by tilting one of the boundaries. Furthermore, we investigate the effect of the coupling of a global shear mode to the hysterons as an example of the interactions between hysteron and non-hysteron degrees of freedom. We hope our work will inspire further studies on designer matter with targeted pathways
Bulk Response of Carboxylic Acid Solutions Observed with Surface Sum-Frequency Generation Spectroscopy
Get PDFWe study the molecular properties of aqueous acetic acid and formic acid solutions with heterodyne-detected vibrational sum-frequency generation spectroscopy (HD-VSFG). For acid concentrations up to ∼5 M, we observe a strong increase of the responses of the acid hydroxyl and carbonyl stretch vibrations with increasing acid concentration due to an increase of the surface coverage by the acid molecules. At acid concentrations >5 M we observe first a saturation of these responses and then a decrease. For pure carboxylic acids we even observe a change of sign of the Im[χ(2)] response of the carbonyl vibration. The decrease of the response of the hydroxyl vibration and the decrease and sign change of the response of the carbonyl vibration indicate the formation of cyclic dimers, which only show a quadrupolar bulk response in the HD-VSFG spectrum because of their antiparallel conformation. We also find evidence for the presence of a quadrupolar response of the CH vibrations of the acid molecules