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The Complexity of Two-Team Polymatrix Games with Independent Adversaries
No full textAdversarial multiplayer games are an important object of study in multiagent learning. In particular, polymatrix zero-sum games are a multiplayer setting where Nash equilibria are known to be efficiently computable. Towards understanding the limits of tractability in polymatrix games, we study the computation of Nash equilibria in such games where each pair of players plays either a zero-sum or a coordination game. We are particularly interested in the setting where players can be grouped into a small number of teams of identical interest. While the three-team version of the problem is known to be PPAD-complete, the complexity for two teams has remained open. Our main contribution is to prove that the two-team version remains hard, namely it is CLS-hard. Furthermore, we show that this lower bound is tight for the setting where one of the teams consists of multiple independent adversaries. On the way to obtaining our main result, we prove hardness of finding any stationary point in the simplest type of non-convex-concave min-max constrained optimization problem, namely for a class of bilinear polynomial objective functions
How did we get there? AI applications to biological networks and sequences
No full textThe rapidly advancing field of artificial intelligence (AI) has transformed numerous scientific domains, including biology, where a vast and complex volume of data is available for analysis. This paper provides a comprehensive overview of the current state of AI-driven methodologies in genomics, proteomics, and systems biology. We discuss how machine learning algorithms, particularly deep learning models, have enhanced the accuracy and efficiency of embedding sequences, motif discovery, and the prediction of gene expression and protein structure. Additionally, we explore the integration of AI in the embedding and analysis of biological networks, including protein–protein interaction networks and multi-layered networks. By leveraging large-scale biological data, AI techniques have enabled unprecedented insights into complex biological processes and disease mechanisms. This work underlines the potential of applying AI to complex biological data, highlighting current applications and suggesting directions for future research to further explore AI in this rapidly evolving field
Demand Uncertainty in Energy Systems: Scenario Catalogs vs. Integrated Robust Optimization
No full textDesigning efficient energy systems is indispensable for shaping a more sustainable society. This involves making infrastructure investment decisions that must be valid for a long-term time horizon. While energy system optimization models constitute a powerful technique to support planning decisions, they need to cope with inherent uncertainty. For example, predicting future demand on a scale of decades is not only an intricate challenge in itself, but small fluctuations in such a forecast might also largely impact the layout of a complex energy system.
In this paper, we compare two methodologies of capturing demand uncertainty for linear-programming based energy system optimization models. On one hand, we generate and analyze catalogs of varying demand scenarios, where each individual scenario is considered independently, so that the optimization produces scenario-specific investment pathways. On the other hand, we make use of robust linear programming to meet the demand of all scenarios at once. Since including a multitude of scenarios increases the size and complexity of the optimization model, we will show how to use warm-starting approaches to accelerate the computation process, by exploiting the similar structure of the linear program across different demand inputs. This allows to integrate a meaningful number of demand scenarios with fully-fledged energy system models.
We demonstrate the practical use of our methods in a case study of the Berlin-Brandenburg area in Germany, a region that contains both a metropolitan area and its rural surroundings. As a backbone, we use the open-source framework oemof to create a sector-coupled optimization model for planning an energy system with up to 100% reduction of greenhouse gas emissions. This model features a fine-grained temporal resolution of one hour for the full year 2050. We consider uncertainty in demand for electricity, hydrogen, natural gas, central, and decentral heat.
Based on our computations, we analyze the trade-offs in terms of quality and computation time for scenario catalogs and the robust optimization approach. We further demonstrate that our procedure provides a valuable strategy for decision makers to gain insight on the robustness and sensitivity of solutions regarding demand variability
Enhancing Multi-Energy Modeling: The Role of Mixed-Integer Optimization Decisions
No full textThe goal to decarbonize the energy sector has led to increased research in modeling and optimizing multi-energy systems. One of the most promising and popular techniques for modeling and solving (multi-)energy optimization problems is (multi-objective) mixed-integer programming, valued for its ability to represent the complexities of integrated energy systems. While the literature often focuses on deriving mathematical formulations and parameter settings, less attention is given to critical post-formulation decisions. Modeling multi-energy systems as mixed-integer linear optimization programs demands decisions across multiple degrees of freedom. Key steps include reducing a real-world multi energy network into an abstract topology, defining variables, formulating the relevant (in-)equalities to represent technical requirements, setting (multiple) objectives, and integrating these elements into a mixed-integer program (MIP). However, with these elements fixed, the specific transformation of the abstract topology into a graph structure and the construction of the MIP remain non-uniquely. These choices can significantly impact user-friendliness, problem size, and computational efficiency, thus affecting the feasibility and efficiency of modeling efforts. In this work, we identify and analyze the additional degrees of freedom and describe two distinct approaches to address them. The approaches are compared regarding mathematical equivalence, suitability for solution algorithms, and clarity of the underlying topology. A case study on a realistic subarea of Berlin’s district heating network involving tri-objective optimization for a unit commitment problem demonstrates the practical significance of these decisions. By highlighting these critical yet often overlooked aspects, our work equips energy system modelers with insights to improve computational efficiency, scalability, and interpretability in their optimization efforts, ultimately enhancing the practicality and effectiveness of multi-energy system models
Similarity-based fuzzy clustering scientific articles: potentials and challenges from mathematical and computational perspectives
No full textFuzzy clustering, which allows an article to belong to multiple clusters with soft membership degrees, plays a vital role in analyzing publication data. This problem can be formulated as a constrained optimization model, where the goal is to minimize the discrepancy between the similarity observed from data and the similarity derived from a predicted distribution. While this approach benefits from leveraging state-of-the-art optimization algorithms, tailoring them to work with real, massive databases like OpenAlex or Web of Science -- containing about 70 million articles and a billion citations -- poses significant challenges. We analyze potentials and challenges of the approach from both mathematical and computational perspectives. Among other things, second-order optimality conditions are established, providing new theoretical insights, and practical solution methods are proposed by exploiting the problem’s structure. Specifically, we accelerate the gradient projection method using GPU-based parallel computing to efficiently handle large-scale data
Parameter Optimization for a Neurotransmission Recovery Model
No full textWe assess the empirical applicability of a simplified model for neurotransmitter release that incorporates maturation, fusion, and recovery of both release sites and vesicles. Model parameters are optimized by fitting the model to experimental data obtained from neuromuscular junction synapses of 3rd-instar Drosophila melanogaster larvae. In particular, the mean-squared error between the local extrema of the simulated total junction current and its experimental counterpart is minimized. We compare three estimation approaches, differing in the choice of optimized parameters and the fusion rate function. Despite the model’s minimalistic structure, it demonstrates a compelling ability to replicate experimental data, yielding plausible parameter estimates for five different animals. An additional identifiability analysis based on the profile likelihood reveals practical non-identifiabilities for several parameters, highlighting the need for additional constraints or data to improve estimation accuracy
An Investigation into the Causal Mechanism of Political Opinion Dynamics: A Model of Hierarchical Coarse-Graining with Community-Bounded Social Influence
No full textThe increasing polarization in democratic societies is an emergent outcome of political opinion dynamics. Yet, the fundamental mechanisms behind the formation of political opinions, from individual beliefs to collective consensus, remain unknown. Understanding that a causal mechanism must account for both bottom-up and top-down influences, we conceptualize political opinion dynamics as hierarchical coarse-graining, where microscale opinions integrate into a macro-scale state variable. Using the CODA (Continuous Opinions Discrete Actions) model, we simulate Bayesian opinion updating, social identity-based information integration, and migration between social identity groups to represent higher-level connectivity. This results in coarse-graining across micro, meso, and macro levels. Our findings show that higher-level connectivity shapes information integration, yielding three regimes: independent (disconnected, local convergence), parallel (fast, global convergence), and iterative (slow, stepwise convergence). In the iterative regime, low connectivity fosters transient diversity, indicating an informed consensus. In all regimes, time-scale separation leads to downward causation, where agents converge on the aggregate majority choice, driving consensus. Critically, any degree of coherent higher-level information integration can overcome misalignment via global downward causation. The results highlight how emergent properties of the causal mechanism, such as downward causation, are essential for consensus and may inform more precise investigations into polarized political discourse
