Sokoine University of Agriculture

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    Seroprevalence and molecular detection of chikungunyaVirus among febrile outpatients seeking health care in Mzuzu city, Malawi

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    Masters DissertationChikungunya is a viral disease caused by Chikungunya virus (CHIKV) that is transmitted to humans by infected Aedes aegypti and Ae. albopictus mosquitoes. The objective of this study was to determine the seroprevalence of Chikungunya infection among febrile patients seeking healthcare in Mzuzu City, Malawi. Blood samples were collected during 2019 from outpatients attending Mzuzu Central Hospital who presented with fever but who were malaria and sepsis negative. Sera from outpatients were transported to the University of Malawi for analysis of the presence or absence of CHIKV specific immunoglobulin M (IgM) antibodies and CHIKV ribonucleic acid (RNA). Enzyme- linked immunosorbent assay (ELISA) was used to detect anti-CHIKV IgM antibodies while one step reverse transcription-polymerase chain reaction (RT-PCR) was conducted in IgM positive sera in order detect the presence of CHIKV RNA. Out of 119 CHIKV-suspected samples, 73 (61.3%) tested positive for anti-CHIKV IgM antibodies by ELISA. When 14 of the IgM seropositive sera were randomly selected and screened using RT-PCR, they were all positive for CHIKV RNA. This study has therefore provided an insight of current seroprevalence of Chikungunya and circulation of CHIKV among the human population in Mzuzu city, Malawi. These results suggest an active circulation of CHIKV in the population, therefore accurate laboratory assays are highly recommended for CHIKV diagnosis and appropriate management of febrile patients.SACID

    Coffee growers’ knowledge, attitude and practice of starbucks’ coffee and farmers equity certification scheme in Mbinga district

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    The study was carried out in Mbinga District, Tanzania to assess smallholder coffee growers’ knowledge, attitude and practice of Coffee and Farmer Equity (C.A.F.E) Practice certification scheme and associated implementation challenges among farmers in the study area. The study employed a cross-sectional research design. The sample size of 188 respondents obtained by using Slovin’s sample size formula was randomly selected and surveyed. A questionnaire, Focus Group Discussions, Key Informant Interview and documentary review were the data collection instruments used to collect data for the study. Descriptive statistic and content analysis were used to analyze quantitative and qualitative data respectively. The study found that the majority of coffee growers were knowledgeable of the scheme, had a favourable attitude towards the scheme and implemented the standards moderately. Moreover, price volatility, the continued incidence of coffee diseases and limited farmers’ participation in standard-setting were the main challenges experienced by coffee growers in the implementation of the C.A.F.E Practices scheme. The study recommends that more training and guidance should be provided to farmers; key actors in coffee certification should enhance farmers bargaining power and access to more profitable certified markets, farmers participation in the process of standard-setting should be given priority, coffee service providers in collaboration with agro-inputs dealers should ensure availability of organic coffee inputs and provision of subsidy on personal protective gears used by farmers during agrochemicals application in coffee farms.Sokoine University of Agricultur

    Spoilage moulds in cured Vanilla beans in Tanzania: a case study of Kilimanjaro region

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    Masters DissertationA study was carried out to identify and control the moulds responsible for spoilage of cured vanilla (Vanilla planifolia) beans and assessment of food safety knowledge, good manufacturing practices (GMP) and good hygiene practices (GHP of vanilla handlers in Kilimanjaro region. Five moulds namely, Aspergillus fumigatus, Aspergillus tubingensis, Aspergillus aculeatus, Byssochlamys spectabilis (anamorph: Paecilomyces variotii) and Penicillium polonicum were isolated from cured vanilla beans. The control of mould growth was carried out by using 30%, 50% and 70% ethanol (vol/vol.) for 5 min and 10 min. Sterile green vanilla beans inoculated with spores of A. tubingensis, A. aculeatus and B. spectabilis were incubated overnight, followed by blanching at 65oC for 3 min and continuation of regular processes, i.e. sweating also known as fermentation and drying. Ethanol concentration of 50% and 70% completely inhibited the growth of moulds. The knowledge of handlers on food safety was satisfactory, while it was unsatisfactory on GMP and GHP. In vanilla curing process, blanching of green vanilla beans was identified as a critical control point (CCP) followed by fermenting “sweating”, drying and conditioning “curing maturation” steps as operational prerequisite programme (OPRP).Mr. Juan Guardad

    Prevalence and associated risk factors in central Tanzania

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    Masters ThesisToxoplasmosis is a parasitic zoonotic disease caused by coccidian intracellular protozoan parasite, Toxoplasma gondii. The parasite is ubiquitous and infects almost all warm blooded animals including humans. Primary infection in human is usually asymtomatic or manifest with febrile illness characterized by headache, sore throat, muscle pain and swollen lymph nodes. Clinical implication of the disease is more on pregnant women and immunocompromised individuals. The overall objective of this study was to determine the prevalence and associated factors to toxoplasmosis among patients attending Dodoma Regional Referral Hospital (DRRH) in Central Tanzania. In this cross-sectional study, a total of 395 outpatients attending DRRH between December 2019 and February 2020 were enrolled. Blood was collected from consenting patients. A structured questionnaire with simple, open and closed ended questions was administered to study subjects to collect information on knowledge of infectious agent, transmission mode and information regarding risk of exposures. Of 395 subjects enrolled in this study, 2% were infected with T. gondii after screening using polymerase chain reaction. There was no statistical relationship between disease diagnosis and risk of exposures. Only 1.3% of the participants had good knowledge towards toxoplasmosis. Majority (88.4%) of the enrolled participants showed good practises towards toxoplasmosis. The results indicate that T. gondii is prevalent among individuals in Dodoma Region and a very low proportion of them had knowledge of the disease. The results suggest the need of health education toward toxoplasmosis among residents of Dodoma. It is important that the health care system diagnostic capacity is enhanced to provide routine diagnosis of T. gondii and promote an interdisciplinary collaboration in its risk management

    Morphological and molecular diversity of stinging nettle (Urtica simensis) from northern Ethiopia

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    Masters ThesisUrtica simensis is an erect perennial herb among the species of nettle which belongs to the family Urticaceae that is endemic to Ethiopia and locally known as Samma. It is cooked and consumed as vegetable in some parts of Ethiopia. It has medicinal properties where traditionally people use it in treating different types of diseases, including infectious diseases like allergies, diabetes and Malaria. This study was conducted to evaluate the diversity of Urtica simensis to address and fill the gap on its genetic variability and distribution using morphological characters and ISSR DNA markers. A total 133 plant samples were collected from Northern growing areas of Ethiopia (Gondar and Mekelle), based on variations in morphological characters. Morphological characterization was conducted on six morphological traits which demonstrated variation based on PCA and correlation matrix analysis. Molecular characterization was carried out using ISSR markers where, only 5 were selected out of 16 ISSR primers that produced a total of 445 scorable bands and 30 polymorphic loci, 100% of polymorphic bands, 1.88 genetic diversity and 2.75 Shannon index from a collection of 133 plant samples. Highest genetic diversity (H) was found to be 0.4286 and Shannon Information index (I) was 0.6197. The highest genetic diversity was indicated in plant samples from Mekelle compared to samples from Gondar (0.3462 and 0.3152 respectively). The Dendrogram based on Jaccard’s similarity coefficients generated by UPGMA cluster analysis using morphological and ISSR data shows major and minor clusters with broad distribution of Urtica simensis individuals over the entire tree which indicates the low divergence in morphological appearance among populations from both study areas. Based on the results of this study, morphological and ISSR markers were effective in studying genetic diversity of Urtica simensis demonstrated by variations in terms of morphological appearances and genetic variability. These results have valuable effect on characterization of Urtica simensis genetic resources in different parts of Ethiopia for conservation purposes.IUCE

    Exclusive breast feeding and its determinants in Yaounde Cameroon: a retrospective survival analysis

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    Exclusive breastfeeding (EBF) of infants for the first six months of life is now considered a global public health goal that is linked to reduction of morbidity and mortality in infants especially in developing countries. These morbidities and mortalities are attributed to increased incidences of upper and lower respiratory tract and gastrointestinal tract infections in infants. The purpose of this study was to assess adherence of mothers to the six-month exclusive breastfeeding as recommended by the World Health Organisation (WHO). A retrospective survival analysis study was carried out with a simple random sample of 503 participants at the Chantal Biya Foundation, consultation and vaccination unit in Yaoundé Cameroon. Qualitative and quantitative data were collected using formal interviews and structured questionnaires respectively for duration of six months between November 2019 and May 2020. A Cox proportional hazard model was used to explore the hazard ratio of associated risk factors. A log-rank test was used to test the hypothesis of differences in survival rates for each variable of the prognostic factors. This study revealed that mean time for mothers to practise EBF was 3.61± 0.095 months within a time range of one to six months. In addition, more than 90% of the mothers were aware of EBF requirements and procedures and attended antenatal clinics. Notwithstanding, only 38% of mothers could survive EBF (Censored) and 62% of mothers could not adhere to EBF practices or failed to practice EBF (95% CI: 0.9056-0.7701). Prognostic factors like mother’s marital status were highly significant (P=0.003; HR: 0.70; 95% CI= 0.55-0.89) whereby, married mothers practised EBF at higher rates than unmarried mothers. Mother’s education level also played a significant role to the adherence of EBF practices (P=0.005; HR: 1.43; 95% CI=1.11-1.84). Mothers who had attained higher education level significantly reported a lower rate of EBF compared to mothers with basic or no formal education. Continuous mass sensitization and enforcement measures is recommended to be done by various health workers at ANC clinics on the importance of proper EBF. Meanwhile, policy review by policy-makers in the health sector like the Ministry of Public Health and Family Planning when designing policies for nursing mothers is recommended.Mathias Okwen and Regina Okwe

    Beekeeping around Udzungwa Mountains National Park in Kilombero District, Tanzania

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    The study assessed the practices, productivity and contribution of beekeeping to household income of communities adjacent to UMNP in Kilombero District. Data were collected through administration of questionnaires to households practicing beekeeping and interview of key informants. Means and percentages were calculated for practices, productivity and income. The study revealed that more than 30% of respondents undertake beekeeping in order to earn income. Traditional beehives were mostly used by respondents in Ifakara (46%) and Kidatu (62%) divisions while many (67%) respondents in Mang’ula division used both modern and traditional beehives. Lack of equipment and extension services were mentioned as the main challenges to beekeeping. Many respondents in Ifakara and Mang’ula divisions admitted that modern beehives have double productivity of bee products compared to traditional beehives. Contribution of beekeeping to household income is generally low in all divisions of Ifakara (4%), Mang’ula (13%) and Kidatu (8%) as compared to farming, petty trade and formal employment. It was concluded that the contribution of beekeeping to household income is low in the study area. Increased productivity could increase the contribution to household income. This could be through ensuring availability of extension services, modern beehives and equipment for harvesting and packaging materials.Eastern Arc Mountains Conservation Endowment Fund (EAMCEF

    Establishment of the Causal Agent(s) of Spike Shedding and Stem Wilting of Pepper (Piper nigrum L.) in Morogoro District, Tanzania

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    Pepper (Piper nigrum L.) serves as a source of income to smallholder spice farmers in Morogoro district of Tanzania. Recently, spike shedding and stem wilting of pepper plants were reported to cause about 30% yield loss of the crop. This study was undertaken to identify the causal agent(s) of the problems. Three pepper gardens in each of the four hamlets (Nyange, Doga, Tandai, and Lukenge) in Tandai village (Kinole ward) were surveyed, and plant tissue and soil samples were collected for laboratory analysis. An experiment was laid out in a randomized complete block design with three replications. Pepper cultivars, Babu kubwa, Babu ndogo, Babu kati, and Ismailia grown in the study area, were used as treatments for evaluation of the prevalence of spike shedding and stem wilting. Treatments mean separation was conducted based on Duncan’s multiple range test at p � 0.05. Regression (R 2 ) and simple correlation (r) analyses between stem wilting (incidence and severity) and termite pest infestation were performed. The identified pathogen in most of the soil and plant tissue samples was Fusarium oxysporum. The nutrients, N, P, Mg, and Cu, concentration in soil and leaf samples was below the optimal ranges. Termite attacks were significantly high in some farmer’s gardens where up to 50.5% of the pepper plants was damaged. Hence, a significant positive correlation was observed between termite pest infestation in gardens and both incidence (r � 0.881, R 2 � 0.74, p < 0.001) and severity of stem wilting (r � 0.918, R 2 � 0.84, p < 0.001) of pepper plants. Most of the termite attacks and damages (70%) were observed on pepper plants supported on silver oak, unlike those trained on Jatropha. A higher percentage of undeveloped berries (36%) and intermediate- size berries (34%) was recorded on cultivars “Babu kati” and “Babu kubwa,” respectively. Multiple factors have been associated to be the causes of spike shedding and stem wilting of pepper, which could be used to develop appropriate control solutions useful to farmers. Confirmation of F. oxysporum pathogenicity is recommended. A comprehensive study is suggested on the repellent or lethal activities of Jatropha against F. oxysporum and termites. Furthermore, studies through field experiments are needed to generate site-specific soil nutrient improvement recommendations and design an integrated approach to control F. oxysporum and termites and to determine existing alternative host plants for these pests

    Health Literacy and Health Behaviour under One Health Approach in Tanzania: Connecting the Connected or Connecting the Unconnected?

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    Globally, health literacy (HL) has been reported to stand as a driver to health behavioural changes. Despite efforts to educate people to enhance the knowledge and skills on health-related matters to improve health literacy, consequently enabling and encouraging individuals to make healthier lifestyle choices,sometimes, there has been notable health impairing behaviours. Definitely, in such circumstances, HL by itself has been observed to fail to drive such behavioural changes. This assumes that there are drivers together with or beyond HL towards behavioural changes. This cross-sectional study assessed HL and its influence on health behaviou r (HB) under One Health Approach in Morogoro, Tanzania. A structured questionnaire was employed for data collection from 1440 respondents acquired through a multistage sampling procedure.A too l was developed to assess HL, an index of score gauged HB, and Likert scale was used to assess attitudes towards HB. Data were analyzed using IBM-SPSS v20 software. The study revealed, about one-third of the respondents (32.9%) had adequate HL, (30.8%) moderate HL and (36.3%) with inadequate HL; 40% had health-enhancing behaviours and 60% with health impairing behaviours. A significant association(health literacy*health behaviour, p=0.000;was observed. The results further revealed that 30% had unfavourable attitudes towards health impairing behaviours, and attitude was significantly foundto associate with behaviours (p=0.000).It is concluded that attitudes towards health impairing behaviours affect the way HL can influence HB.This study recommends strengthening efforts to enhance health information dissemination through health education focusing on culture as the context that informs behaviour

    Host communities' attitude towards benefit sharing from natural gas extraction: insights from Kilwa District, Tanzania

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    The East African Journal of Social Sciences and Humanities V. 1, Issue 2, June 2019, pg. 53-59Tanzania is among the blessed countries in Africa in terms of minerals endowment. However, natural gas extraction is in its infancy stage. The existing studies on natural gas extractions in Tanzania focused more at the national level with limited understanding of the host community’s issues. This study was conducted to examine the host community’s attitude on natural gas extraction in Kilwa District. Specifically, the study assessed: (i) host communities’ attitude towards benefits sharing, and (ii) factors that influence host communities’ attitude towards benefit sharing. A structured questionnaire was administered to 373 respondents. A Likert scale was used to measure the attitude of host community members towards benefit sharing. An Ordinal Logistic Regression (OLR) technique was used to examine factors influencing attitudes of communities towards benefits sharing. The findings revealed that overall the respondents had a negative attitude (60%) towards benefits sharing from the extractive industry. Distance from extraction activities, access to electricity, the relationship between the community and extractive companies and sex of respondent were important determinants of attitude (p < 0.05). The study concludes that the high level of negative attitude implies host communities dissatisfaction towards natural gas investment that may translate into resource curse in the country. This calls for immediate practical interventions by policymakers, planners, and extractive companies to address challenges that limit equitable access to various benefits by host communities

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