Swedish Museum of Natural History
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An increase in detection rates of the critically endangered Baltic Proper harbor porpoise in Swedish waters in recent years
No full textThe Baltic Proper harbor porpoise (Phocoena phocoena) is currently listed as critically endangered (CR), with the Static Acoustic Monitoring of the Baltic Sea Harbor Porpoise (SAMBAH) project concluding that only ~500 individuals remain. This population has a distribution that spans the waters of nine countries, making regular abundance estimates and management action challenging. Given the continued decline of other depleted porpoises, namely the vaquita (Phocoena sinus), the question is often raised about whether management action would even have a positive impact, or whether it is too late for population recovery. When abundance estimates are sparse over time, monitoring programs at key sites are likely to serve as the best indication of population trends, and may provide an early indication of changes at the population level. We compared passive acoustic monitoring data from 12 stations that were utilized both in the SAMBAH project (2011–2013) and as a part of the Swedish National Monitoring Program (2017–2020) to determine trends in detection rates. There was a 29% increase in mean daily detection rate during May–October (over the breeding season) between the two study periods. At the three stations with the highest number of detections, log linear regression revealed a yearly increase of 2.4% between 2011 and 2019 (−4.4–9.6, 95% CI). This may be indicative of the beginnings of population recovery, or simply an indication that the decline has stalled. The rate of increase is still well below what is likely to be possible for porpoise populations, and unlikely to buffer against any potential increase in pressures in the future. We therefore call for urgent management action to remove threats and protect this CR population, the only resident cetacean in the Baltic region, in order to give it the best chance of recovery
The genome of the venomous snail Lautoconus ventricosus sheds light on the origin of conotoxin diversity
No full textBackground: Venoms are deadly weapons to subdue prey or deter predators that have evolved independently in many animal lineages. The genomes of venomous animals are essential to understand the evolutionary mechanisms involved inthe origin and diversification of venoms. Results: Here, we report the chromosome-level genome of the venomous Mediterranean cone snail, Lautoconus ventricosus (Caenogastropoda: Conidae). The total size of the assembly is 3.59 Gb; ithas high contiguity (N50 = 93.53 Mb) and 86.6 Mb of the genome assembled into the 35 largest scaffolds or pseudochromosomes. On the basis of venom gland transcriptomes, we annotated 262 complete genes encoding conotoxin precursors, hormones, and other venom-related proteins. These genes were scattered in the different pseudochromosomesand located within repetitive regions. The genes encoding conotoxin precursors were normally structured into 3 exons,which did not necessarily coincide with the 3 structural domains of the corresponding proteins. Additionally, we found evidence in the L. ventricosus genome for a past whole-genome duplication event by means of conserved gene synteny withthe Pomacea canaliculata genome, the only one available at the chromosome level within Caenogastropoda. The whole-genome duplication event was further confirmed by the presence of a duplicated hox gene cluster. Key genes for gastropod biology including those encoding proteins related to development, shell formation, and sex were located inthe genome. Conclusions: The new high-quality L. ventricosus genome should become a reference for assembling andanalyzing new gastropod genomes and will contribute to future evolutionary genomic studies among venomous animals
A Combined Transcriptomics and Proteomics Approach Reveals the Differences in the Predatory and Defensive Venoms of the Molluscivorous Cone Snail Cylinder ammiralis (Caenogastropoda: Conidae)
No full textVenoms are complex mixtures of proteins that have evolved repeatedly in the animal kingdom. Cone snail venoms represent one of the best studied venom systems. In nature, this venom can be dynamically adjusted depending on its final purpose, whether to deter predators or hunt prey. Here, the transcriptome of the venom gland and the proteomes of the predation-evoked and defensive venoms of the molluscivorous cone snail Cylinder ammiralis were catalogued. A total of 242 venom-related transcripts were annotated. The conotoxin superfamilies presenting more different peptides were O1, O2, T, and M, which also showed high expression levels (except T). The three precursors of the J superfamily were also highly expressed. The predation-evoked and defensive venoms showed a markedly distinct profile. A total of 217 different peptides were identified, with half of them being unique to one venom. A total of 59 peptides ascribed to 23 different protein families were found to be exclusive to the predatory venom, including the cono-insulin, which was, for the first time, identified in an injected venom. A total of 43 peptides from 20 protein families were exclusive to the defensive venom. Finally, comparisons of the relative abundance (in terms of number of peptides) of the different conotoxin precursor superfamilies showed that most of them present similar abundance regardless of the diet
5S‐IGS rDNA in wind‐pollinated trees ( Fagus L.) encapsulates 55 million years of reticulate evolution and hybrid origins of modern species
No full textStandard models of plant speciation assume strictly dichotomous genealogies in which a species, theancestor, is replaced by two offspring species. The reality in wind-pollinated trees with long evolutionaryhistories is more complex: species evolve from other species through isolation when genetic drift exceeds gene flow; lineage mixing can give rise to new species (hybrid taxa such as nothospecies and allopolyploids). The multi-copy, potentially multi-locus 5S rDNA is one of few gene regions conserving signal from dichotomous and reticulate evolutionary processes down to the level of intra-genomic recombination. Therefore, it can provide unique insights into the dynamic speciation processes of lineages that diversified tens of millions of years ago. Here, we provide the first high-throughput sequencing (HTS) of the 5S intergenic spacers (5S-IGS) for a lineage of wind-pollinated subtropical to temperate trees, the Fagus crenata – F.sylvatica s.l. lineage, and its distant relative F. japonica. The observed 4963 unique 5S-IGS variants reflect acomplex history of hybrid origins, lineage sorting, mixing via secondary gene flow, and intra-genomic competition between two or more paralogous-homoeologous 5S rDNA lineages. We show that modern species are genetic mosaics and represent a striking case of ongoing reticulate evolution during the past 55 million years.EDS and GWG gratefully acknowledge the support of the German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig funded by the German Research Foundation (FZT 118). The research was partially supported by MIUR (Italian Ministry for Education, University and Research), Law 232/2016, ‘Department of excellence’. Open Access Funding provided by Universita degli Studi della Tuscia within the CRUI-CARE Agreement. </p
A late Paleoproterozoic (1.74 Ga) deep-sea, low-temperature, iron-oxidizing microbial hydrothermal vent community from Arizona, USA
No full textModern marine hydrothermal vents occur in a wide variety of tectonic settings and are characterized by seafloor emission of fluids rich in dissolved chemicals and rapid mineral precipitation. Some hydrothermal systems vent only low-temperature Fe-rich fluids, which precipitate deposits dominated by iron oxyhydroxides, in places together with Mn-oxyhydroxides and amorphous silica. While a proportion of this mineralization is abiogenic, most is the result of the metabolic activities of benthic, Fe-oxidizing bacteria (FeOB), principally belonging to the Zetaproteobacteria. These micro-organisms secrete micrometer-scale stalks, sheaths, and tubes with a variety of morphologies, composed largely of ferrihydrite that act as sacrificial structures, preventing encrustation of the cells that produce them. Cultivated marine FeOB generally require neutral pH and microaerobic conditions to grow. Here, we describe the morphology and mineralogy of filamentous microstructures from a late Paleoproterozoic (1.74 Ga) jasper (Fe-oxide- silica) deposit from the Jerome area of the Verde mining district in central Arizona, USA, that resemble the branching tubes formed by some modern marine FeOB. On the basis of this comparison, we interpret the Jerome area filaments as having formed by FeOB on the deep seafloor, at the interface of weakly oxygenated seawater and low-temperature Fe-rich hydrothermal fluids. We compare the Jerome area filaments with other purported examples of Precambrian FeOB and discuss the implications of their presence for existing redox models of Paleoproterozoic oceans during the “Boring Billion.”Additional funding: The Research Council of Norway is acknowledged for support to the NTNU NanoLab (Trondheim) through the NORTEM infrastructure Grant 197405, TEM Gemini Centre, Norwegian University of Science and Technology (NTNU), Norway. TEM work was funded by the Bergen Research Foundation through a grant awarded to Nicola McLoughlin. Raman spectroscopy was funded through a Villum Investigator Grant to Don Canfield (No. 16518). We acknowledge the Paul Scherrer Institute, Villigen, Switzerland, for provision of synchrotron radiation beamtime at the TOMCAT beamline X02DA of the SLS. AB acknowledges support from NSERC Discovery and Accelerator programs and the University of Johannesburg in the form of a Distinguished Visiting Professorship.</p
Exceptional preservation of reidite in the Rochechouart impact structure, France: New insights into shock deformation and phase transition of zircon
No full textReidite, the high-pressure zircon (ZrSiO4) polymorph, is a diagnostic indicator of impact events. Natural records of reidite are, however, scarce, occurring mainly as micrometer-sized lamellae, granules, and dendrites. Here, we present a unique sequence of shocked zircon grains found within a clast from the Chassenon suevitic breccia (shock stageIII) from the ~200 Ma, 20–50 km wide Rochechouart impact structure in France. Our study comprises detailed characterization with scanning electron microscopy coupled with electron backscatter diffraction with the goal of investigating the stability and response of ZrSiO4 under extreme P–T conditions. The shocked zircon grains have preserved various amounts of reidite ranging from 4% up to complete conversion. The grains contain various variants of reidite, including the common habits: lamellae and granular reidite. In addition, three novel variants have been identified: blade, wedge, and massive domains. Several of these crosscut and offset each other, revealing that reidite can form at multiple stages during an impact event. Our data provide evidence that reidite can be preserved in impactites to a much greater extent than previously documented. We have further characterized reversion products of reidite in the form of fully recrystallized granular zircon grains and minute domains of granular zircon in reidite-bearing grains that occur in close relationship to reidite. Neoblasts in these grains have a distinct crystallography that is the result of systematic inheritance of reidite. We interpret that the fully granular grains have formed from prolonged exposure of temperatures in excess of 1200 °C. Reidite-bearing grains with granular domains might signify swift quenching from temperatures close to 1200 °C. Grains subjected to these specific conditions therefore underwent partial zircon-to-reidite reversion, instead of full grain recrystallization. Based on our ZrSiO4 microstructural constraints, we decipher the grains evolution at specific P–T conditions related to different impact stages, offering further understanding of the behavior of ZrSiO4 during shock
Biomineralization of the Cambrian chancelloriids
No full textAs extinct animals that flourished during the Cambrian explosion, chancelloriids have a unique body plan lacking guts but with a flexible integument and a suite of star-shaped, hollow sclerites. Due to this body plan, along with the paucity of knowledge on sclerite biomineralization, the phylogenetic position of chancelloriids within the Metazoa is still controversial. Integration of analyses of diverse fossils from Cambrian stage 2 to the Wuliuan Stage of China and Australia indicates that chancelloriid sclerites possess an encasement-like organic layer and a fibrous aragonitic layer. The organic layer is inferred to be a specialized trait derived from the epidermal integument of the animal body. The sclerites were likely biomineralized by using the outer organic layer as a template to absorb cations and precipitate crystal nuclei, reflecting a strategy adopted by a range of eumetazoans with a developed epidermis. Therefore, the hypothesis that chancelloriids represent an epitheliozoan-grade animal and an early explorer of template-based biomineralization is supported.This research was supported by the National Key Research and Development Program (grant 2017YFC0603101), the National Natural Science Foundation of China (grants 41621003, 41890840, 41930319, and 42002011), the Strategic Priority Research Program of the Chinese Academy of Sciences (grant XDB26000000), and the 111 Project (grant D17013). H. Yun was funded by the China Postdoctoral Science Foundation (grant 2019M663793); Brock was funded by a 1000 Talent Shaanxi Province Fellowship.</p
