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Development of a portable leaf photosynthesis and volatile organic compounds emission system
Full text linkUnderstanding how plant carbon metabolism responds to environmental variables such as light is central to understanding ecosystem carbon cycling and the production of food, biofuels, and biomaterials. Here, we couple a portable leaf photosynthesis system to an autosampler for volatile organic compounds (VOCs) to enable field observations of net photosynthesis simultaneously with emissions of VOCs as a function of light. Following sample collection, VOCs are analyzed using automated thermal desorption-gas chromatograph-mass spectrometry (TD-GC–MS). An example is presented from a banana plant in the central Amazon with a focus on the response of photosynthesis and the emissions of eight individual monoterpenes to light intensity. Our observations reveal that banana leaf emissions represent a 1.1 +/- 0.1% loss of photosynthesis by carbon. Monoterpene emissions from banana are dominated by trans-β-ocimene, which accounts for up to 57% of total monoterpene emissions at high light. We conclude that the developed system is ideal for the identification and quantification of VOC emissions from leaves in parallel with CO2 and water fluxes.The system therefore permits the analysis of biological and environmental sensitivities of carbon metabolism in leaves in remote field locations, resulting in the emission of hydrocarbons to the atmosphere. • A field-portable system is developed for the identification and quantification of VOCs from leaves in parallel with leaf physiological measurements including photosynthesis and transpiration. • The system will enable the characterization of carbon and energy allocation to the biosynthesis and emission of VOCs linked with photosynthesis (e.g. isoprene and monoterpenes) and their biological and environmental sensitivities (e.g. light, temperature, CO2). • Allow the development of more accurate mechanistic global VOC emission models linked with photosynthesis, improving our ability to predict how forests will respond to climate change. It is our hope that the presented system will contribute with critical data towards these goals across Earth's diverse tropical forests. © 202
Quaternary climate changes as speciation drivers in the Amazon floodplains
Full text linkThe role of climate as a speciation driver in the Amazon has long been discussed. Phylogeographic studies have failed to recover synchronous demographic responses across taxa, although recent evidence supports the interaction between rivers and climate in promoting speciation. Most studies, however, are biased toward upland forest organisms, while other habitats are poorly explored and could hold valuable information about major historical processes. We conducted a comparative phylogenomic analysis of floodplain forest birds to explore the effects of historical environmental changes and current connectivity on population differentiation. Our findings support a similar demographic history among species complexes, indicating that the central portion of the Amazon River basin is a suture zone for taxa isolated across the main Amazonian sub-basins. Our results also suggest that changes in the fluvial landscape induced by climate variation during the Mid- and Late Pleistocene drove population isolation, leading to diversification with subsequent secondary contact. Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC)
Habitat segregation among freshwater shrimp species in an Amazonian rainforest stream system
No full textResource partitioning is a stabilising mechanism known to maintain species diversity in a variety of environments. Assemblages of stream shrimp species are structured by habitat features and predation. Therefore, segregation along habitat dimensions could facilitate coexistence among species in shrimp assemblages even when segregation is a result of predation pressure by fish species. These ecological interactions take place on a background modulated by biogeographic features, such as connectivity among drainages. However, these generalisations are mainly based on studies undertaken in temperate regions. We investigated whether abundances of rainforest shrimp species are related to habitat dimensions, and whether habitat–abundance relationships might be mediated through fish-assemblage structure and the effect of drainages on connectivity. We detected effects of habitat variation on densities of shrimp species, but the magnitudes of the effects were larger for some species than others. Fish-assemblage composition also affected shrimp densities. Two of the three species of shrimp showed some degree of habitat specialisation, but only along current-velocity, depth, and pH gradients. Habitat segregation among species occurred along the current-velocity and pH gradients. Relationships between density and environmental gradients differed between catchments for only one species and only along the pH gradient. Our findings provide evidence that rainforest-stream shrimp species respond differently to environmental gradients and this could facilitate coexistence among species. However, interactions with fish seem to have a stronger effect on species densities, and consequently species segregation, than direct effects of the environmental gradients, resulting in apparent competition for these resources. © 2019 John Wiley & Sons Lt
Redescription of Hypostomus carinatus (Steindachner 1881) (Siluriformes: Loricariidae) from the rio Amazonas basin in Brazil
No full textIn the midst of the effervescent discussions of climate change and setbacks in national environmental protection mechanisms, the Brazilian Amazon and its ichthyofauna are in the spotlight. Therefore, in this work we redescribe Hypostomus carinatus (Steindachner 1881), a little known medium-sized Amazonian species, providing means for its correct identification and taxonomic stabilization. In this way, based on the analysis of type specimens and recently collected material, H. carinatus is redescribed and its geographical distribution is expanded to the basins of the Branco, Japurá, Juruá, Solimões, Negro, Tapajós, Trombetas and Uatumã rivers. A lectotype of the Plecostomus carinatus is designated herein. Hypostomus carinatus is mainly distinguished from congeners by the presence of four to ten predorsal plates posteriorly surrounding parieto-supraoccipital bone; dark spots on body and fins; by having the dark spots smaller or almost equal to distance among each spot; body carenae armored with odontodes; and compressed head with eyes laterally positioned. Copyright © 2020 Magnolia Pres
A new species in Simulium (Trichodagmia) (Diptera: Simuliidae) from Chapada Diamantina region, Brazil: cryptic diversity revealed by morphological and molecular evidence
No full textWe describe new species of black fly that had previously been identified as S. scutistriatum Lutz due to morphological similarities at the pupal stage. The description of the new species, Simulium (Trichogamia) itajara n. sp., is based on molecular and morphological evidences. The known distribution of the new species is currently restricted to the Paraguaçu River hydrographic basin in Chapada Diamantina National Park and the surrounded area in Bahia state, Brazil. The distribution record for S. scutistriatum in the northeast region of Brazil needs to be removed, since the previous records were based on occurrence of S. itajara n. sp
Litter and soil biogeochemical parameters as indicators of sustainable logging in Central Amazonia
No full textOne-fourth of Brazilian Amazonia is managed for timber production, but only a small portion of active logging sites follow sustainable forest management plans (SFMPs). Amazon forests without SFMPs are susceptible to deforestation because such plans integrate the use of forest products and conservation goals by allowing selective wood extraction following regulations aimed at reducing the long-term impact of logging. However, it remains uncertain whether reduced-impact selective logging typical of SFMPs (17–20 m3 ha− 1 yr− 1 of 38–70 species) changes forest regeneration, carbon (C) stocks, and nutrient cycling. Here, we tested the hypothesis that litter and soil biogeochemical parameters serve as indicators of sustainable logging as forest regeneration, C stocks, and C-to-nutrient ratios in soil and litter become progressively similar to those of primary forests as time elapses after logging. We used a chronosequence spanning nine years since logging to relate litter and soil (at 0–10, 10–30, 30–50 cm depth) C stocks and 12 and 15 biogeochemical parameters, respectively, as well as canopy cover and tree seedling density (10–150 cm tall) in upland evergreen Amazon forests. In one unlogged and four logged stands sampled three, five, seven, and nine years after logging, we compared 15 permanent plots (three replicated 0.5 ha plots per time-since-logging category). We found that five parameters explained >80% of the variation in soil and litter properties among logged and unlogged stands. Litter parameters were more sensitive to logging than soil parameters, as litter C stocks and C-to-nutrient ratios increased systematically after logging. Canopy cover decreased over time and was ~14% lower nine years after logging. Total seedling density did not change consistently over time but was ~54% higher seven years after logging. Our data suggest that the SFMP guidelines have served the purpose of maintaining soil quality and forest regeneration. Litter and soil parameters can be useful indicators of sustainable forest management in upland evergreen forests in Central Amazonia. © 2020 Elsevier B.V
Temperature and food availability alters the physiology and aerobic capacity of tambaqui (Colossoma macropomum)
No full textEffects of a regenerating matrix on the survival of birds in tropical forest fragments
Full text linkBackground: Vast areas of lowland neotropical forest have regenerated after initially being cleared for agricultural purposes. The ecological value of regenerating second growth to forest-dwelling birds may largely depend on the age of the forest, associated vegetative structure, and when it is capable of sustaining avian demographics similar to those found in pristine forest. Methods: To determine the influence of second growth age on bird demography, we estimated the annual survival of six central Amazonian bird species residing in pristine forest, a single 100 and a single 10 ha forest fragment, taking into consideration age of the surrounding matrix (i.e. regenerating forest adjacent to each fragment) as an explanatory variable. Results: Study species exhibited three responses: arboreal, flocking and ant-following insectivores (Willisornis poecilinotus, Thamnomanes ardesiacus and Pithys albifrons) showed declines in survival associated with fragmentation followed by an increase in survival after 5 years of matrix regeneration. Conversely, Percnostola rufifrons, a gap-specialist, showed elevated survival in response to fragmentation followed by a decline after 5 years of regeneration. Lastly, facultative flocking and frugivore species (Glyphorynchus spirurus and Dixiphia pipra, respectively) showed no response to adjacent clearing and subsequent regeneration. Conclusions: Our results in association with previous studies confirm that the value of regenerating forest surrounding habitat patches is dependent on two factors: ecological guild of the species in question and second growth age. Given the rapid increase in survival following succession, we suggest that the ecological value of young tropical forest should not be based solely on a contemporary snapshot, but rather, on the future value of mature second growth as well. © 2020 The Author(s)