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A Reduced F₄₂₀-Dependent Nitrite Reductase in an Anaerobic Methanotrophic Archaeon
No full textAnaerobic methanotrophic archaea (ANME), which oxidize methane in marine sediments through syntrophic associations with sulfate-reducing bacteria, carry homologs of coenzyme F₄₂₀-dependent sulfite reductase (Fsr) of Methanocaldococcus jannaschii, a hyperthermophilic methanogen from deep-sea hydrothermal vents. M. jannaschii Fsr (MjFsr) and ANME-Fsr belong to two phylogenetically distinct groups, FsrI and FsrII, respectively. MjFsrI reduces sulfite to sulfide with reduced F₄₂₀ (F₄₂₀H₂), protecting methyl coenzyme M reductase (Mcr), an essential enzyme for methanogens, from sulfite inhibition. However, the function of FsrIIs in ANME, which also rely on Mcr and live in sulfidic environments, is unknown. We have determined the catalytic properties of FsrII from a member of ANME-2c. Since ANME remain to be isolated, we expressed ANME2c-FsrII in a closely related methanogen, Methanosarcina acetivorans. Purified recombinant FsrII contained siroheme, indicating that the methanogen, which lacks a native sulfite reductase, produced this coenzyme. Unexpectedly, FsrII could not reduce sulfite or thiosulfate with F₄₂₀H₂. Instead, it acted as an F₄₂₀H₂-dependent nitrite reductase (FNiR) with physiologically relevant Km values (nitrite, 5 μM; F₄₂₀H₂, 14 μM). From kinetic, thermodynamic, and structural analyses, we hypothesize that in FNiR, F₄₂₀H₂-derived electrons are delivered at the oxyanion reduction site at a redox potential that is suitable for reducing nitrite (E⁰′ [standard potential], +440 mV) but not sulfite (E⁰′, −116 mV). These findings and the known nitrite sensitivity of Mcr suggest that FNiR may protect nondenitrifying ANME from nitrite toxicity. Remarkably, by reorganizing the reductant processing system, Fsr transforms two analogous oxyanions in two distinct archaeal lineages with different physiologies and ecologies
Direct-imaging Discovery and Dynamical Mass of a Substellar Companion Orbiting an Accelerating Hyades Sun-like Star with SCExAO/CHARIS
No full textWe present the direct-imaging discovery of a substellar companion in orbit around a Sun-like star member of the Hyades open cluster. So far, no other substellar companions have been unambiguously confirmed via direct imaging around main-sequence stars in Hyades. The star HIP 21152 is an accelerating star as identified by the astrometry from the Gaia and Hipparcos satellites. We detected the companion, HIP 21152 B, in multiple epochs using the high-contrast imaging from SCExAO/CHARIS and Keck/NIRC2. We also obtained the stellar radial-velocity data from the Okayama 188 cm telescope. The CHARIS spectroscopy reveals that HIP 21152 B’s spectrum is consistent with the L/T transition, best fit by an early T dwarf. Our orbit modeling determines the semimajor axis and the dynamical mass of HIP 21152 B to be 17.5_(-3.8)^(+7.2) au and 27.8_(-5.4)^(+8.4) M_(Jup), respectively. The mass ratio of HIP 21152 B relative to its host is ≈2%, near the planet/brown dwarf boundary suggested by recent surveys. Mass estimates inferred from luminosity-evolution models are slightly higher (33–42 M_(Jup)). With a dynamical mass and a well-constrained age due to the system’s Hyades membership, HIP 21152 B will become a critical benchmark in understanding the formation, evolution, and atmosphere of a substellar object as a function of mass and age. Our discovery is yet another key proof of concept for using precision astrometry to select direct-imaging targets
Antibody recognition of CD4-induced open HIV-1 Env trimers
No full textHIV-1 envelope (Env), a heterotrimer of gp120-gp41 subunits, mediates fusion of the viral and host cell membranes after interactions with the host receptor CD4 and a coreceptor. CD4 binding induces rearrangements in Env trimer, resulting in a CD4-induced (CD4i) open Env conformation. Structural studies of antibodies isolated from infected donors have defined antibody-Env interactions, with one class of antibodies specifically recognizing the CD4i open Env conformation. Here, we characterize a group of monoclonal antibodies isolated from HIV-1 infected donors (V2i mAbs) that display characteristics of CD4i antibodies. Binding experiments demonstrate that the V2i mAbs preferentially recognize CD4-bound open Env trimers. Structural characterizations of V2i mAb-Env-CD4 trimer complexes using single-particle cryo-electron microscopy show recognition by V2i mAbs using different angles of approach to the gp120 V1V2 domain and the β2/β3 strands on a CD4i open conformation Env with no direct interactions of the mAbs with CD4. We also characterize CG10, a CD4i antibody that was raised in mice immunized with a gp120-CD4 complex, complexed with Env trimer and CD4. CG10 exhibits similar characteristics to the V2i antibodies: i.e., recognition of the open Env conformation, but shows direct contacts to both CD4 and gp120. Structural comparisons of these and previously characterized CD4i antibody interactions with Env provide a suggested mechanism for how these antibodies are elicited during HIV-1 infection
Near-field and photocatalytic properties of mono- and bimetallic nanostructures monitored by nanocavity surface-enhanced Raman scattering
No full textLocalized surface plasmon resonances (LSPR) generated in a particle-film nanocavity enhance electric fields within a nanoscale volume. LSPR can also decay into hot carriers, highly energetic species that catalyze photocatalytic reactions in molecular analytes located in close proximity to metal surfaces. In this study, we examined the intensity of the electric field (near-field) and photocatalytic properties of plasmonic nanocavities formed by single nanoparticles (SNP) on single nanoplates (SNL). Using 4-nitrobenzenethiol (4-NBT) as a molecular reporter, we determined the near-field responses, as well as measured rates of 4-NBT dimerization into 4,4-dimercaptoazobenzene (DMAB) in the gold (Au) SNP on AuSNL nanocavity (Au-Au), as well as in AuSNP on AgSNL (Au-Ag), AgSNP on AuSNL (Ag-Au), and AgSNP on AgSNL (Ag-Ag) nanocavities using 532, 660, and 785 nm excitations. We observed the strongest near-field signals of 4-NBT at 660 nm in all examined plasmonic systems that is found to be substantially red-shifted relative to the LSPR of the corresponding nanoparticles. We also found that rates of DMAB formation were significantly greater in heterometal nanocavities (Au-Ag and Ag-Au) compared to their monometallic counterparts (Au-Au and Ag-Ag). These results point to drastic differences in plasmonic and photocatalytic properties of mono and bimetallic nanostructures
Morphing Quantum Codes
No full textWe introduce a morphing procedure that can be used to generate new quantum codes from existing quantum codes. In particular, we morph the 15-qubit Reed-Muller code to obtain a [[10,1,2]] code that is the smallest-known stabilizer code with a fault-tolerant logical T gate. In addition, we construct a family of hybrid color-toric codes by morphing the color code. Our code family inherits the fault-tolerant gates of the original color code, implemented via constant-depth local unitaries. As a special case of this construction, we obtain toric codes with fault-tolerant multiqubit control-Z gates. We also provide an efficient decoding algorithm for hybrid color-toric codes in two dimensions and numerically benchmark its performance for phase-flip noise. We expect that morphing may also be a useful technique for modifying other code families such as triorthogonal codes
The long-active afterglow of GRB 210204A: detection of the most delayed flares in a gamma-ray burst
No full textWe present results from extensive broadband follow-up of GRB 210204A over the period of 30 d. We detect optical flares in the afterglow at 7.6 × 10⁵ s and 1.1 × 10⁶ s after the burst: the most delayed flaring ever detected in a GRB afterglow. At the source redshift of 0.876, the rest-frame delay is 5.8 × 10⁵ s (6.71 d). We investigate possible causes for this flaring and conclude that the most likely cause is a refreshed shock in the jet. The prompt emission of the GRB is within the range of typical long bursts: it shows three disjoint emission episodes, which all follow the typical GRB correlations. This suggests that GRB 210204A might not have any special properties that caused late-time flaring, and the lack of such detections for other afterglows might be resulting from the paucity of late-time observations. Systematic late-time follow-up of a larger sample of GRBs can shed more light on such afterglow behaviour. Further analysis of the GRB 210204A shows that the late-time bump in the light curve is highly unlikely due to underlying SNe at redshift (z) = 0.876 and is more likely due to the late-time flaring activity. The cause of this variability is not clearly quantifiable due to the lack of multiband data at late-time constraints by bad weather conditions. The flare of GRB 210204A is the latest flare detected to date
Early-time Ultraviolet Spectroscopy and Optical Follow-up Observations of the Type IIP Supernova 2021yja
No full textWe present three epochs of early-time ultraviolet (UV) and optical HST/STIS spectroscopy of the young, nearby Type IIP supernova (SN) 2021yja. We complement the HST data with two earlier epochs of Swift UVOT spectroscopy. The HST and Swift UVOT spectra are consistent with those of other well-studied Type IIP SNe. The UV spectra exhibit rapid cooling at early times, while less dramatic changes are seen in the optical. We also present Lick/KAIT optical photometry up to the late-time tail phase, showing a very long plateau and shallow decline compared with other SNe IIP. Our modeling of the UV spectrum with the TARDIS radiative transfer code produces a good fit for a high-velocity explosion, a low total extinction E(B − V) = 0.07 mag, and a subsolar metallicity. We do not find a significant contribution to the UV flux from an additional heating source, such as interaction with the circumstellar medium, consistent with the observed flat plateau. Furthermore, the velocity width of the Mg ii λ2798 line is comparable to that of the hydrogen Balmer lines, suggesting that the UV emission is confined to a region close to the photosphere
A wearable electrochemical biosensor for the monitoring of metabolites and nutrients
No full textWearable non-invasive biosensors for the continuous monitoring of metabolites in sweat can detect a few analytes at sufficiently high concentrations, typically during vigorous exercise so as to generate sufficient quantity of the biofluid. Here we report the design and performance of a wearable electrochemical biosensor for the continuous analysis, in sweat during physical exercise and at rest, of trace levels of multiple metabolites and nutrients, including all essential amino acids and vitamins. The biosensor consists of graphene electrodes that can be repeatedly regenerated in situ, functionalized with metabolite-specific antibody-like molecularly imprinted polymers and redox-active reporter nanoparticles, and integrated with modules for iontophoresis-based sweat induction, microfluidic sweat sampling, signal processing and calibration, and wireless communication. In volunteers, the biosensor enabled the real-time monitoring of the intake of amino acids and their levels during physical exercise, as well as the assessment of the risk of metabolic syndrome (by correlating amino acid levels in serum and sweat). The monitoring of metabolites for the early identification of abnormal health conditions could facilitate applications in precision nutrition
Low exposure long-baseline neutrino oscillation sensitivity of the DUNE experiment
No full textThe Deep Underground Neutrino Experiment (DUNE) will produce world-leading neutrino oscillation measurements over the lifetime of the experiment. In this work, we explore DUNE’s sensitivity to observe charge-parity violation (CPV) in the neutrino sector, and to resolve the mass ordering, for exposures of up to 100 kiloton-megawatt-calendar years (kt-MW-CY), where calendar years include an assumption of 57% accelerator uptime based on past accelerator performance at Fermilab. The analysis includes detailed uncertainties on the flux prediction, the neutrino interaction model, and detector effects. We demonstrate that DUNE will be able to unambiguously resolve the neutrino mass ordering at a 4σ (5σ) level with a 66 (100) kt-MW-CY far detector exposure, and has the ability to make strong statements at significantly shorter exposures depending on the true value of other oscillation parameters, with a median sensitivity of 3σ for almost all true δ_(CP) values after only 24 kt-MW-CY. We also show that DUNE has the potential to make a robust measurement of CPV at a 3σ level with a 100 kt-MW-CY exposure for the maximally CP-violating values δ_(CP) = ±π/2. Additionally, the dependence of DUNE’s sensitivity on the exposure taken in neutrino-enhanced and antineutrino-enhanced running is discussed. An equal fraction of exposure taken in each beam mode is found to be close to optimal when considered over the entire space of interest
High throughput discovery of enhanced visible photoactivity in Fe–Cr vanadate solar fuels photoanodes
No full textMetal oxide solar absorbers are well suited for photoelectrochemical applications where requisite properties include stability in highly oxidizing environments, in addition to solar energy conversion. Metal vanadates are of particular interest due to their relatively low band gap energies compared to traditional, wide-gap photocatalysts. Concerted efforts on BiVO4-based photoanodes have revealed multiple avenues for improving the solar conversion efficiencies for photon energies above 2.5 eV but have not addressed the ultimate performance limitations from the undesirably high band gap energy. Fe and Cr vanadates have a lower band gap and thus a higher potential solar conversion efficiency, although to-date the absorbed 2–2.5 eV photons are not effectively converted to the desired anodic photocurrent. By using combinatorial synthesis and high throughput screening, we demonstrate that cation substitutions with the monoclinic MVO4 phase (M = Cr, Fe) improves the utilization of photons in this energy range. Given the portfolio of photoanode improvement techniques available, we suggest optimization of (Cr_(0.5)Fe_(0.5))VO₄-based photoanodes as a promising path for enable solar fuel technologies