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Collection and storage of human white blood cells for analysis of DNA damage and repair activity using the comet assay in molecular epidemiology studies
Get PDFDNA damage and repair activity are often assessed in blood samples from humans in different types of molecular epidemiology studies. However, it is not always feasible to analyse the s#38les on the day of collection without any type of storage. For instance, certain studies use repeated sampling of cells from the same subject or samples from different subjects collected at different time-points, and it is desirable to analyse all these samples in the same comet assay experiment. In addition, flawless comet assay analyses on frozen samples opens up for the possibility of using this technique on biobank material. In this article we discuss the use of cryopreserved peripheral blood mononuclear cells (PBMCs), buffy coat (BC) and whole blood (WB) for analysis of DNA damage and repair using the comet assay. The published literature and the authors’ experiences indicate that various types of blood samples can be cryopreserved with only minor effect on the basal level of DNA damage. There is evidence to suggest that WB and PBMCs can be cryopreserved for several years without much effect on the level of DNA damage. However, care should be taken when cryopreserving WB and BCs. It is possible to use either fresh or frozen samples of blood cells, but results from fresh and frozen cells should not be used in the same dataset. The article outlines detailed protocols for the cryopreservation of PBMCs, BCs and WB samples.acceptedVersio
Quantifying the Impact of the Covid-19 Lockdown Measures on Nitrogen Dioxide Levels throughout Europe
Get PDFIn this paper, the effect of the lockdown measures on nitrogen dioxide (NO2) in Europe is analysed by a statistical model approach based on a generalised additive model (GAM). The GAM is designed to find relationships between various meteorological parameters and temporal metrics (day of week, season, etc.) on the one hand and the level of pollutants on the other. The model is first trained on measurement data from almost 2000 monitoring stations during 2015–2019 and then applied to the same stations in 2020, providing predictions of expected concentrations in the absence of a lockdown. The difference between the modelled levels and the actual measurements from 2020 is used to calculate the impact of the lockdown measures adjusted for confounding effects, such as meteorology and temporal trends. The study is focused on April 2020, the month with the strongest reductions in NO2, as well as on the gradual recovery until the end of July. Significant differences between the countries are identified, with the largest NO2 reductions in Spain, France, Italy, Great Britain and Portugal and the smallest in eastern countries (Poland and Hungary). The model is found to perform best for urban and suburban sites. A comparison between the found relative changes in urban surface NO2 data during the lockdown and the corresponding changes in tropospheric vertical NO2 column density as observed by the TROPOMI instrument on Sentinel-5P revealed good agreement despite substantial differences in the observing method.publishedVersio
Sea Spray Aerosol (SSA) as a Source of Perfluoroalkyl Acids (PFAAs) to the Atmosphere: Field Evidence from Long-Term Air Monitoring
Get PDFThe effective enrichment of perfluoroalkyl acids (PFAAs) in sea spray aerosols (SSA) demonstrated in previous laboratory studies suggests that SSA is a potential source of PFAAs to the atmosphere. In order to investigate the influence of SSA on atmospheric PFAAs in the field, 48 h aerosol samples were collected regularly between 2018 and 2020 at two Norwegian coastal locations, Andøya and Birkenes. Significant correlations (p < 0.05) between the SSA tracer ion, Na+, and PFAA concentrations were observed in the samples from both locations, with Pearson’s correlation coefficients (r) between 0.4–0.8. Such significant correlations indicate SSA to be an important source of atmospheric PFAAs to coastal areas. The correlations in the samples from Andøya were observed for more PFAA species and were generally stronger than in the samples from Birkenes, which is located further away from the coast and closer to urban areas than Andøya. Factors such as the origin of the SSA, the distance of the sampling site to open water, and the presence of other PFAA sources (e.g., volatile precursor compounds) can have influence on the contribution of SSA to PFAA in air at the sampling sites and therefore affect the observed correlations between PFAAs and Na+.publishedVersio
Author Correction: DNA damage in circulating leukocytes measured with the comet assay may predict the risk of death (Scientific Reports, (2021), 11, 1, (16793), 10.1038/s41598-021-95976-7)
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Assessing the impacts of citizen-led policies on emissions, air quality and health
Get PDFAir pollution is a global challenge, and especially urban areas are particularly affected by acute episodes. Traditional approaches used to mitigate air pollution primarily consider the technical aspects of the problem but not the role of citizen behaviour and day-to-day practices. ClairCity, a Horizon 2020 funded project, created an impact assessment framework considering the role of citizen behaviour to create future scenarios, aiming to improve urban environments and the wellbeing and health of its inhabitants. This framework was applied to six pilot cases: Bristol, Amsterdam, Ljubljana, Sosnowiec, Aveiro Region and Liguria Region, considering three-time horizons: 2025, 2035 and 2050. The scenarios approach includes the Business As Usual (BAU) scenario and a Final Unified Policy Scenarios (FUPS) established by citizens, decision-makers, local planners and stakeholders based on data collected through a citizen and stakeholder co-creation process. Therefore, this paper aims to present the ClairCity outcomes, analysing the quantified impacts of selected measures in terms of emissions, air quality, population exposure, and health.
Each case study has established a particular set of measures with different levels of ambition, therefore different levels of success were achieved towards the control and mitigation of their specific air pollution problems. The transport sector was the most addressed by the measures showing substantial improvements for NO2, already with the BAU scenarios, and overall, even better results when applying the citizen-led FUPS scenarios. In some cases, due to a lack of ambition for the residential and commercial sector, the results were not sufficient to fulfil the WHO guidelines.
Overall, it was found in all cities that the co-created scenarios would lead to environmental improvements in terms of air quality and citizens’ health compared to the baseline year of 2015. However, in some cases, the health impacts were lower than air quality due to the implementation of the measures not affecting the most densely populated areas. Benefits from the FUPS comparing to the BAU scenario were found to be highest in Amsterdam and Bristol, with further NO2 and PM10 emission reductions around 10%–16% by 2025 and 19%–28% by 2050, compared to BAU.acceptedVersio
The Monitoring Nitrous Oxide Sources (MIN2OS) satellite project
Get PDFThe Monitoring Nitrous Oxide Sources (MIN2OS) satellite project aims at monitoring global-scale nitrous oxide (N2O) sources by retrieving N2O surface fluxes from the inversion of space-borne N2O measurements that are sensitive to the lowermost atmospheric layers under favorable conditions. MIN2OS will provide emission estimates of N2O at a horizontal resolution of 1° × 1° on the global scale and 10 × 10 km2 on the regional scale on a weekly to monthly basis depending on the application (e.g., agriculture, national inventories, policy, scientific research). Our novel approach is based on the development of: 1) a space-borne instrument operating in the Thermal InfraRed domain providing, in clear sky conditions, N2O mixing ratio in the lowermost atmosphere (900 hPa) under favorable conditions (summer daytime) over land and under favorable and unfavorable (winter nighttime) conditions over the ocean and 2) an atmospheric inversion framework to estimate N2O surface fluxes from the atmospheric satellite observations. After studying three N2O spectral bands (B1 at 1240–1350 cm−1, B2 at 2150–2260 cm−1 and B3 at 2400–2600 cm−1), a new TIR instrument will be developed, centered at 1250–1330 cm−1, with a resolution of 0.125 cm−1, a Full Width at Half Maximum of 0.25 cm−1 and a swath of 300 km. To optimally constrain the retrieval of N2O vertical profiles, the instrument will be on-board a platform at ~830 km altitude in a sun-synchronous orbit crossing the Equator in descending node at 09:30 local time in synergy with two other platforms (Metop-SG and Sentinel-2 NG) expected to fly in 2031–32 aiming at detecting surface properties, agricultural information on the field scale and vertical profiles of atmospheric constituents and temperature. The lifetime of the MIN2OS project would be 4–5 years to study the interannual variability of N2O surface fluxes. The spectral noise can be decreased by at least a factor of 5 compared to the lowest noise accessible to date with the Infrared Atmospheric Sounding Interferometer-New Generation (IASI-NG) mission. The N2O total error is expected to be less than ~1% (~3 ppbv) along the vertical. The preliminary design of the MIN2OS project results in a small instrument (payload of 90 kg, volume of 1200 × 600 × 300 mm3) with, in addition to the spectrometer, a wide field and 1-km resolution imager for cloud detection. The instruments could be hosted on a small platform, the whole satellite being largely compatible with a dual launch on VEGA-C. The MIN2OS project has been submitted to the European Space Agency Earth Explorer 11 mission ideas.publishedVersio
Editorial for the Special Issue From Nanoinformatics to Nanomaterials Risk Assessment and Governance
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Calibration of CO, NO2, and O3 Using Airify: A Low-Cost Sensor Cluster for Air Quality Monitoring
Get PDFDuring the last decade, extensive research has been carried out on the subject of low-cost sensor platforms for air quality monitoring. A key aspect when deploying such systems is the quality of the measured data. Calibration is especially important to improve the data quality of low-cost air monitoring devices. The measured data quality must comply with regulations issued by national or international authorities in order to be used for regulatory purposes. This work discusses the challenges and methods suitable for calibrating a low-cost sensor platform developed by our group, Airify, that has a unit cost five times less expensive than the state-of-the-art solutions (approximately €1000). The evaluated platform can integrate a wide variety of sensors capable of measuring up to 12 parameters, including the regulatory pollutants defined in the European Directive. In this work, we developed new calibration models (multivariate linear regression and random forest) and evaluated their effectiveness in meeting the data quality objective (DQO) for the following parameters: carbon monoxide (CO), ozone (O3), and nitrogen dioxide (NO2). The experimental results show that the proposed calibration managed an improvement of 12% for the CO and O3 gases and a similar accuracy for the NO2 gas compared to similar state-of-the-art studies. The evaluated parameters had different calibration accuracies due to the non-identical levels of gas concentration at which the sensors were exposed during the model’s training phase. After the calibration algorithms were applied to the evaluated platform, its performance met the DQO criteria despite the overall low price level of the platform.publishedVersio
Clinical application of intrathecal gadobutrol for assessment ofcerebrospinal fluid tracer clearance to blood
Get PDFBACKGROUND. Methodology for estimation of cerebrospinal fluid (CSF) tracer clearance could have wide clinical application in predicting excretion of intrathecal drugs and metabolic solutes from brain metabolism and for diagnostic workup of CSF disturbances.
METHODS. The MRI contrast agent gadobutrol (Gadovist) was used as a CSF tracer and injected into the lumbar CSF. Gadobutrol is contained outside blood vessels of the CNS and is eliminated along extravascular pathways, analogous to many CNS metabolites and intrathecal drugs. Tracer enrichment was verified and assessed in CSF by MRI at the level of the cisterna magna in parallel with obtaining blood samples through 48 hours.
RESULTS. In a reference patient cohort (n = 29), both enrichment within CSF and blood coincided in time. Blood concentration profiles of gadobutrol through 48 hours varied between patients diagnosed with CSF leakage (n = 4), idiopathic normal pressure hydrocephalus dementia (n = 7), pineal cysts (n = 8), and idiopathic intracranial hypertension (n = 4).
CONCLUSION. Assessment of CSF tracer clearance is clinically feasible and may provide a way to predict extravascular clearance of intrathecal drugs and endogenous metabolites from the CNS. The peak concentration in blood (at about 10 hours) was preceded by far peak tracer enhancement at MRI in extracranial lymphatic structures (at about 24 hours), as shown in previous studies, indicating a major role of the spinal canal in CSF clearance capacity.
FUNDING. The work was supported by the Department of Neurosurgery, Oslo University Hospital; the Norwegian Institute for Air Research; and the University of Oslo.publishedVersio