Institutional Repository of Nature Research Centre
Not a member yet
1487 research outputs found
Sort by
First report of lingonberry stunted yellows disease of Vaccinium vitis-idaea L. associated with ‘ Candidatus Phytoplasma trifolii’-related phytoplasma strain in Lithuania /
Lingonberries (Vaccinium vitis-idaea L.) are low-growing, evergreen shrubs of cooler, northern regions of North America and Europe. These plants produce berries that are unique in flavor, bear high economic significance, and play a vital role in maintaining the diversity of the northern ecosystems (Kowalska, 2021). In October 2023 diseased plants of lingonberry were discovered in Labanoras Forest (55°14′N 25°42′E) (Lithuania). The plants expressed symptoms of stunting, yellowing, little leaf, shortened internodes, and stem distortions. Samples (leaves) were collected and tested from ten asymptomatic and ten symptomatic lingonberry plants. Total genomic DNAs of all samples were extracted by a CTAB protocol. Extracted DNAs were used as a template in direct and nested PCRs using the universal primer pairs P1/P7 and R16F2n/R2, respectively, to amplify phytoplasma 16S rRNA gene 1.2 kb fragments (Lee et al. 1998). The primer pairs SecAFor1/SecARev3 and SecAFor2/SecARev3 were used in direct and semi-nested PCRs, respectively, to amplify phytoplasma secA genes 0.5 kb fragment (Dickinson and Hodgetts, 2013). PCR amplicons of the 16S rRNA and secA genes specific for the phytoplasmas were only obtained from all sampled symptomatic plants. Three R16F2n/R2 and three SecAFor2/SecARev3 amplicons were cloned and submitted for Sanger sequencing (Nature Research Centre, Vilnius, Lithuania by 3500 Genetic Analyser). The three 16S rDNAs as well as the three secA gene fragments were identical. The BLAST analysis (NCBI) of the obtained sequences showed a similarity percentage, ranging from 99.75% to 100% (1247-1250 bp from 1250 bp) for 16SrRNA, and 98.13% to 99,15% (473-478 bp from 482 bp) for secA amplicons, with numerous strains of ‘Candidatus (Ca.) Phytoplasma (P.) trifolii’ (first hit MT674293 and KR906724, respectively). Additionally, 16S rDNA sequences by using iPhyClassifier were used to create virtual RFLP pattern (Zhao et al. 2009). The generated pattern was identical (similarity coefficient 1.00) to the reference pattern of 16Sr group VI, subgroup A. The phytoplasma strain detected in lingonberries was designated as lingonberry stunted yellows, LingbSY. Furthermore, the enzymatic RFLP analysis was performed with the 14 restriction enzymes (Lee et al., 1998), and obtained profiles were compared with virtually generated using iPhyClassifier. This yielded the same classification of detected phytoplasma to the 16SrVI-A phytoplasma subgroup. The phylogenetic analysis of both marker gene sequences revealed the same LingbSY phytoplasma classification. Selected sequences were deposited in GenBank (NCBI) with Accession No: PP237769 (16S rRNA gene) and No: PP238489 (secA gene). Phytoplasmas of 16SrI phytoplasma group were identified in lingonberries in Canada (Brochu et al. 2022). Strains of 16SrVI phytoplasma group were reported in Vaccinium myrtillus in Austria (Fernandez et al. 2007). This is the first report of ‘Ca. P. trifolii’ strain belonging to 16SrVI-A phytoplasma subgroup infecting lingonberry worldwide. Also, this is the first report of 16SrVI phytoplasma group in Lithuania. The presence of this phytoplasma poses a threat to the natural ecosystem and could eventually spread into agricultural settings in our country. Therefore, it’s crucial to conduct surveillance for insect vectors, and assess effective control methods. Without proactive action, long term sustainability of lingonberries and their ecosystems may be jeopardized
Quantitative pollen-based climate reconstructions for Lateglacial and Holocene periods deduced from Dukstelis Paleolake data /
Leipoxais buttafuoco – a new species from Mali (Lepidoptera, Lasiocampidae, Lasiocampinae, Argudini) /
A new species of the genus Leipoxais Holland, 1893, Leipoxais buttafuoco sp. n., is described from Mali. The new species is compared with the morphologically closest Leipoxais mustelina (Distant, 1899) from South Africa. Adults and their genitalia are illustrated
Intensity of Haemoproteus spp. blood infection differs between wild birds captured using different trapping methods /
Infection with haemoparasites (Haemosporida spp.) is common within wild birds’ populations and has been associated with adverse effects on birds’ fitness and life performance. Existing literature suggests a hypothesis that birds infected with haemosporidians and exhibiting high parasitemia levels may demonstrate reduced activity, potentially leading to their underrepresentation in captures which use stationary traps, such as mist nets. However, there are limited studies demonstrating this phenomenon in wild birds. To study the possible under representation of highly parasitized birds, captured with commonly used stationary mist nets, we compared parasitemia levels of haemosporidian parasites in wild birds captured during spring migration using both actively startling of birds and birds trapped passively into the mist nets. Utilizing cumulative link mixed models, we assessed the influence of trapping methods on parasitemia scores, controlling for factors such as species identity, season progression, and migration distance. Our dataset comprised 1815 individuals of 60 species, including 142 actively captured and 1673 passively captured ones. Although the number of infected individuals was higher in passively caught birds (24 % in active vs 43 % in passive), the study revealed a significant difference between infected birds within two capture methods: despite challenges in balancing sample sizes, and trapping dates, the findings affirm the underestimation of birds having high parasitemia levels with prevalent mist net techniques. We highlight the importance of considering potential biases in trapping methods when studying haemosporidian parasites in avian hosts during migration
New species of gasteroid fungi in Lithuania /
Two new species of Lithuanian gasteroid macromycetes (Basidiomycota, Lycoperdaceae), Lycoperdon lambinonii and Bovista furfuracea, collected during field surveys in pine forest and calcareous grassland, respectively, were identified. These species have not been found before due to possible confusion with other species and the specificity of habitats such as calcareous grasslands. Descriptions and photographs of the fungi studied and notes on their ecology and distribution are given
New and noteworthy lichens from Lithuania /
Four species of lichens were reported as new to Lithuania: Flavoplaca arcis, Kuettlingeria teicholyta, Ramali-na europaea, Xanthoria calcicola. Of these, two calcicolous lichens, Kuettlingeria teicholyta and Flavoplaca arcis, were recorded for the first time in the Baltic States. Two species, namely Cladonia turgida and Peltigera aphthosa, previously considered extinct, were re-found after more than 50 years in Lithuania. The conservation value of some of the listed species was discussed
The origin of the Lithuanian terms for raised bog surface formations.
When preparing monographs on the Kamanos and Šepeta mires, Lithuanian researchers had to coin Lithuanian terms for the meso-relief, micro-relief and hydrographic formations of raised bogs. The current article reviews how the terms introduced by pioneers in Lithuanian mire research became established in Lithuanian scientific publications, textbooks, methodological teaching aids, and public documents
A wide range of abiotic habitat factors and genetic diversity facilitate expansion of Trapa natans within its native range /
Climate change and intense human activity are exacerbating changes in species' ranges. While the rapid spread of invasive alien species is well documented worldwide, the phenomenon of the spread of native species is poorly understood. To explain the problem of rapidly spreading species in the changing world, it is necessary to understand their ecology, genetic diversity and habitat limitation. The aim of our study was to analyze the ecological requirements and genetic diversity in the population of the macrophyte Trapa natans s. l., an invasive alien species in North America but native in Europe and Asia. We investigated the populations in its native range (Central and Northeastern Europe), where the species is defined as rare or extinct. We found the occurrence of T. natans in Northeastern Europe aquatic habitats where, up to now, it was described as an extinct species. The results of our environmental studies showed that the species has a wide range of tolerance to habitat conditions and lives in medium to highly nutrient-rich water with low and high salinity. Using Amplified Fragment Length Polymorphism (AFLP) analysis, we revealed high genetic variability within populations with relatively limited differentiation between populations. We showed that some populations are highly diverse (possibly refugia; Central Europe) and others are homogeneous (new sites, commercial reintroduction; Northeastern Europe). Conservation status of T. natans in its native range should be reconsidered, as the species has spread rapidly in recent decades and could be detrimental to aquatic habitats. The conclusion is that expansion/invasion can start from small populations, but under favorable conditions these populations spread rapidly. The introduction of species (even native) should be done carefully, if at all, as uncontrolled introduction to new locations, e.g. private ponds, could be the start of dispersal (native habitats) or invasion (non-native area)
Database of European vascular plants red lists as a contribution to more coherent plant conservation /
We introduce the database of European vascular plant red lists, a compilation of red list categories designated to taxa during in-country conservation assessments. Version 1.0 of the database is a standalone static dataset with open access in an end-user friendly format. Its aim is to fulfil the objectives of European Cooperation in Science and Technology (COST) Action 18201, ConservePlants. The database synthesizes data across 42 red lists from 41 countries, with participation of 39 out of a total of 44 European countries and two additional Mediterranean countries. The database contains 51,109 records representing 21,481 original taxonomic names with 37 different red list categories. During data harmonisation, 20,312 of the original taxonomic names were assigned to 17,873 unique accepted taxonomic names with scientific authorships across 184 families, 1650 genera and 15,593 species; and red list categories were standardised to 13 unique categories. We see this database as a source of information in diverse plant conservation activities and suitable for various stakeholders
Comparative analysis of root phenolic profiles and antioxidant activity of five native and invasive Solidago L. species /
The high environmental importance of invasive goldenrod has prompted research to find potential benefits that can be derived from these species. This study aimed to identify differences in root phenolic profiles among five Solidago species, thus providing valuable information on their potential applications and the botanical origin of the raw material. The roots of native S. virgaurea L., two alien species S. gigantea Aiton and S. canadensis L. and their hybrids S. ×niederederi Khek and S. ×snarskisii Gudž. & Žaln. were sampled from mixed-species stands in Lithuania. A complex of twelve phenolic acids and their derivatives was identified and quantified in methanol–water root extracts using the HPLC-PDA and LC/MS systems. The radical-scavenging capacities of the extracts were assessed by ABTS. The chemical content of the roots of S. virgaurea, S. gigantea and S. ×niederederi were statistically similar, while the roots of S. canadensis and S. ×snarskisii contained lower amounts of compounds than the other species. The PCA score-plot models of the phenolic profiles only partially confirmed the identification of S. ×niederederi and S. ×snarskisii as crosses between native and alien species. The findings from the phenolic profiles and the observed radical-scavenging activity of root extracts of Solidago species provide valuable insights into their potential applications in various fields