Scientific Journals of INIA (Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria)
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Estimate of biomass and carbon pools in disturbed and undisturbed oak forests in Tunisia
Get PDFAim of the study. To estimate biomass and carbon accumulation in a young and disturbed forest (regenerated after a tornado) and an aged cork oak forest (undisturbed forest) as well as its distribution among the different pools (tree, litter and soil).Area of study. The north west of TunisiaMaterial and methods. Carbon stocks were evaluated in the above and belowground cork oak trees, the litter and the 150 cm of the soil. Tree biomass was estimated in both young and aged forests using allometric biomass equations developed for wood stem, cork stem, wood branch, cork branch, leaves, roots and total tree biomass based on combinations of diameter at breast height, total height and crown length as independent variables.Main results. Total tree biomass in forests was 240.58 Mg ha-1 in the young forest and 411.30 Mg ha-1 in the aged forest with a low root/shoot ratio (0.41 for young forest and 0.31 for aged forest). Total stored carbon was 419.46 Mg C ha-1 in the young forest and 658.09 Mg C ha-1 in the aged forest. Carbon stock (Mg C ha-1) was estimated to be113.61(27.08%) and 194.08 (29.49%) in trees, 3.55 (0.85%) and 5.73 (0.87%) in litter and 302.30 (72.07%) and 458.27 (69.64%) in soil in the young and aged forests, respectively.Research highlights. Aged undisturbed forest had the largest tree biomass but a lower potential for accumulation of carbon in the future; in contrast, young disturbed forest had both higher growth and carbon storage potential.Keywords: Tree biomass; disturbance; allometry; cork oak forests; soil organic carbon stock
Shifts in soil fungal communities in Tuber melanosporum plantations over a 20-year transition from agriculture fields to oak woodlands
Get PDFAim of study: To explore the diversity of soil fungi found in black truffle (Tuber melanosporum) plantations following the introduction of the mycorrhizal-colonized host tree, (Quercus ilex), through the development of the brûlé and production of mature sporocarps.Area of study: This research was carried out province of Teruel, Aragon (central eastern Spain).Material and Methods: Soil samples from 6 plantations were collected beneath Q. ilex trees inoculated with T. melanosporum, of 3, 5, 7, 10, 14 and 20 years after out planting in truffle plantations. Soil DNA was extracted, PCR-amplified and sequenced to compare soil fungi present at different ages.Main results: As tree age increased, we observed an increased frequency of T. melanosporum (from 8% to 71% of sequenced colonies) and concomitant decrease in the combined frequency of Fusarium spp. and Phoma spp. (from 64% to 3%).Research highlights: There are important shifts in species richness and in functional groups in the soil fungal communities in maturing black truffle-oak woodland plantations. The observed inverse relationship between the frequency of soil endophytic and/or pathogenic fungi and that of the mycorrhizal mutualist T. melanosporum provides support to continue a deeper analysis of shifts in fungal communities and functional groups where there is a transition from agriculture fields to woodlands.Abbreviations used: Ectomycorrhiza (ECM) fungus; Vesicular arbuscular mycorrhiza (VAM); Operational taxonomic unit (OTU)
Comparing Johnson’s SBB, Weibull and Logit-Logistic bivariate distributions for modeling tree diameters and heights using copulas
Get PDFAim of study: In this study we compare the accuracy of three bivariate distributions: Johnson’s SBB, Weibull-2P and LL-2P functions for characterizing the joint distribution of tree diameters and heights.Area of study: North-West of Spain.Material and methods: Diameter and height measurements of 128 plots of pure and even-aged Tasmanian blue gum (Eucalyptus globulus Labill.) stands located in the North-west of Spain were considered in the present study. The SBB bivariate distribution was obtained from SB marginal distributions using a Normal Copula based on a four-parameter logistic transformation. The Plackett Copula was used to obtain the bivariate models from the Weibull and Logit-logistic univariate marginal distributions. The negative logarithm of the maximum likelihood function was used to compare the results and the Wilcoxon signed-rank test was used to compare the related samples of these logarithms calculated for each sample plot and each distribution.Main results: The best results were obtained by using the Plackett copula and the best marginal distribution was the Logit-logistic.Research highlights: The copulas used in this study have shown a good performance for modeling the joint distribution of tree diameters and heights. They could be easily extended for modelling multivariate distributions involving other tree variables, such as tree volume or biomass
Short Communication. Using high resolution UAV imagery to estimate tree variables in Pinus pinea plantation in Portugal
No full textAim of study: The study aims to analyse the potential use of low‑cost unmanned aerial vehicle (UAV) imagery for the estimation of Pinus pinea L. variables at the individual tree level (position, tree height and crown diameter).Area of study: This study was conducted under the PINEA project focused on 16 ha of umbrella pine afforestation (Portugal) subjected to different treatments.Material and methods: The workflow involved: a) image acquisition with consumer‑grade cameras on board an UAV; b) orthomosaic and digital surface model (DSM) generation using structure-from-motion (SfM) image reconstruction; and c) automatic individual tree segmentation by using a mixed pixel‑ and region‑based based algorithm.Main results: The results of individual tree segmentation (position, height and crown diameter) were validated using field measurements from 3 inventory plots in the study area. All the trees of the plots were correctly detected. The RMSE values for the predicted heights and crown widths were 0.45 m and 0.63 m, respectively.Research highlights: The results demonstrate that tree variables can be automatically extracted from high resolution imagery. We highlight the use of UAV systems as a fast, reliable and cost‑effective technique for small scale applications.Keywords: Unmanned aerial systems (UAS); forest inventory; tree crown variables; 3D image modelling; canopy height model (CHM); object‑based image analysis (OBIA), structure‑from‑motion (SfM). ERRATUM PDF
Fire effects in Pinus uncinata Ram plantations
Get PDFAim of study: Understanding fire ecology of main forest species is essential for a sound, scientifically based on managing of wildlands and also to assess likely implications due to changes in fire regime under a global change scenario. Few references can be found about fire ecology of Pinus uncinata Ram. (PU). PU species grows in the Central Pyrenees where large, severe wildland fires did not occur frequently in the past. However, several fires with extreme fire behavior have affected PU stands in last years and they might disturb other PU forest in the future.Area of study: Cabdella fire (February 2012), in Lleida province, is one of the several wildland fires occurred in 2012 (winter season) in the Central Pyrenees. Fire affected a large PU plantation (102 ha) located at 1.800-2,100 meters above the sea.Material and methods: We have analyzed first order fire effects in three fireline intensity thresholds along three years in terms of mortality ratio, scorched height, percentage of scorched crown volume and bark char height.Main results: PU seems to be a very tolerant species to low and medium fire line intensity but fire effects were very significant when fire line intensity was high. In medium fireline intensity sites, probability of mortality ranged from 15 to 30% and the dead trees had the highest values on scorched height and percentage of scorched crown volume.Research highlights: Results from this work supports that prescribed burning might be used to efficiently decrease fuel load and fuel vertical continuity while avoiding considerable PU mortality. It also displayed that when fuel management has been implemented, PU mortality might be limited even under extreme fire behavior.Abbreviations used: PU: Pinus uncinata Ram
Mapping invasive alien Acacia dealbata Link using ASTER multispectral imagery: a case study in central-eastern of Portugal
Get PDFAim of the study: Acacia dealbata is an alien invasive species that is widely spread in Portugal. The main goal of this study was to produce an accurate and detailed map for this invasive species using ASTER multispectral imagery.Area of study: The central-eastern zone of Portugal was used as study area. This whole area is represented in an ASTER scene covering about 321.1 x 103 ha.Material and methods: ASTER imagery of two dates (flowering season and dry season) were classified by applying three supervised classifiers (Maximum Likelihood, Support Vector Machine and Artificial Neural Networks) to five different land cover classifications (from most generic to most detailed land cover categories). The spectral separability of the land cover categories was analyzed and the accuracy of the 30 produced maps compared.Main results: The highest classification accuracy for acacia mapping was obtained using the flowering season imagery, the Maximum Likelihood classifier and the most detailed land cover classification (overall accuracy of 86%; Kappa statistics of 85%; acacia class Kappa statistics of 100%). As a result, the area occupied by acacia was estimated to be approximated 24,770 ha (i.e. 8% of the study area).Research highlights: The methodology explored proved to be a cost-effective solution for acacia mapping in central-eastern of Portugal. The obtained map enables a more accurate and detailed identification of this species’ invaded areas due to its spatial resolution (minimum mapping unit of 0.02 ha) providing a substantial improvement comparably to the existent national land cover maps to support monitoring and control activities.Keywords: remote sensing; invasive alien species; land cover mapping; vegetation mapping
Biochemical characterization of legume seeds as ingredients in animal feed
Get PDFThe current European protein deficit is estimated as high as 70% of present needs. Because of the high protein content of their seeds, grain legumes are attractive candidates for lowering the deficiency in plant protein production. The objective of this work was to identify new sources of vegetable protein that would reduce our high dependence of soy, the main source of protein in the manufacture of feedstuffs. To achieve this goal, we determined the proximate composition, the bioactive components, as well as the antinutritional factors present in the studied seeds. In general, the protein, fat and carbohydrates content of legume seeds studied were within the limits found in the literature. The bioactive compounds detected in all the seeds were α-galactosides, myoinositol phosphates, protease inhibitors and phenols. IP6 (phytic acid) was the main inositol phosphate form in all the samples. The highest protease inhibitors content was detected in both Lathyrus cicera cultivars. Vicia ervilia and L. cicera cultivars showed low haemagglutinating activity (20.4 HU/g). The γ-glutamyl-S-ethenyl-cysteine content in Vicia narbonensis was around 16.0 mg/g. Both L. cicera varieties presented similar β-N-oxalyl-L-α, β-diaminopropionic acid content (0.80 mg/g). The two V. ervilia varieties showed high canavanine concentration (1.93-5.28 mg/g). Vicine was only detected in V. narbonensis cultivars (0.3 mg/g). The biochemical characterization carried out in this study allows us to know the limits of inclusion of these minor crop seeds in feed formulations in order to replace the soybean
Surplus thermal energy model of greenhouses and coefficient analysis for effective utilization
Get PDFIf a greenhouse in the temperate and subtropical regions is maintained in a closed condition, the indoor temperature commonly exceeds that required for optimal plant growth, even in the cold season. This study considered this excess energy as surplus thermal energy (STE), which can be recovered, stored and used when heating is necessary. To use the STE economically and effectively, the amount of STE must be estimated before designing a utilization system. Therefore, this study proposed an STE model using energy balance equations for the three steps of the STE generation process. The coefficients in the model were determined by the results of previous research and experiments using the test greenhouse. The proposed STE model produced monthly errors of 17.9%, 10.4% and 7.4% for December, January and February, respectively. Furthermore, the effects of the coefficients on the model accuracy were revealed by the estimation error assessment and linear regression analysis through fixing dynamic coefficients. A sensitivity analysis of the model coefficients indicated that the coefficients have to be determined carefully. This study also provides effective ways to increase the amount of STE
Modelling the number of olive groves in Spanish municipalities
Get PDFThe univariate generalized Waring distribution (UGWD) is presented as a new model to describe the goodness of fit, applicable in the context of agriculture. In this paper, it was used to model the number of olive groves recorded in Spain in the 8,091 municipalities recorded in the 2009 Agricultural Census, according to which the production of oil olives accounted for 94% of total output, while that of table olives represented 6% (with an average of 44.84 and 4.06 holdings per Spanish municipality, respectively). UGWD is suitable for fitting this type of discrete data, with strong left-sided asymmetry. This novel use of UGWD can provide the foundation for future research in agriculture, with the advantage over other discrete distributions that enables the analyst to split the variance. After defining the distribution, we analysed various methods for fitting the parameters associated with it, namely estimation by maximum likelihood, estimation by the method of moments and a variant of the latter, estimation by the method of frequencies and moments. For oil olives, the chi-square goodness of fit test gives p-values of 0.9992, 0.9967 and 0.9977, respectively. However, a poor fit was obtained for the table olive distribution. Finally, the variance was split, following Irwin, into three components related to random factors, external factors and internal differences. For the distribution of the number of olive grove holdings, this splitting showed that random and external factors only account about 0.22% and 0.05%. Therefore, internal differences within municipalities play an important role in determining total variability
Culinary and sensory traits diversity in the Spanish Core Collection of common beans (Phaseolus vulgaris L.)
Get PDFThe Spanish National Plant Genetic Resource Center’s core collection of bean germplasm includes 202 accessions selected from more than 3000 accessions in function of passport data, seed phenotype, genetic background, and agronomic traits. To acquire more useful information about these accessions, we cultivated and characterized them for sensory and culinary traits. We found considerable variation for culinary and sensory traits of the cooked beans (mean coefficients of variation: 41% for the sensory traits and 40% for the culinary traits). The large dataset enabled us to study correlations between sensory and culinary traits and among these traits and geographic origin, seed color, and growth habit. Greater proportion of white in the seed coat correlated positively with brightness and negatively with mealiness (r=0.60, r=-0.60, p<0.001, respectively). Mealiness correlated negatively with seed-coat roughness and rate of water absorption (r=-0.60, r=-0.53, p<0.001, respectively). Materials of Andean origin had lower seed-coat brightness (p<0.01) and seed-coat roughness, and greater seed-coat perceptibility, mealiness, flavor, and aroma (p<0.001) than materials of Mesoamerican origin. Growth habit failed to correlate with culinary or sensory traits. Breeders can benefit from the information about this core collection available at www.crf.inia.es/crfesp/paginaprincipaljudia.asp