Dryad Digital Repository (Duke University)

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Dryad Digital Repository (Duke University)
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    197463 research outputs found

    Scaffold order and orientation for pseudo-chromosomal assembly

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    Chromosome, start and end position and orientation for each scaffold, based on mummer alignment of the Eurasian skylark scaffolds against the zebra finch genome, with additional manual edits

    R code and data for running SDMs in biomod2

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    Zip file containing: (1) raw butterfly locality data used in the species distribution models (SDMs)('ButterflyDataBorneo_UniqueRecordsSITE1950s.csv'), (2) R script file for processing Worldclim climate variables ('WorldclimData_CorrelationScript.R'), and (3) R script file for running SDMs in biomod2 ('Biomod2SDMs_77Butterflies.R')

    Output maps from prioritization analyses

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    Zip file containing output maps depicting the final prioritized area in Sabah for range-restricted butterflies. Files include: (1) the prioritized area for all 77 butterfly species ('PrioritizedArea_AllSpecies.tif'); (2) the prioritized area for all 77 butterfly species with the inclusion of a boundary length modifier (BLM) ('PrioritizedArea_AllSpeciesBLM.tif'); (3) the prioritized area for the 15 butterfly species that are endemic to Borneo ('PrioritizedArea_EndemicSpecies.tif'); and (4) the prioritized area for the 15 endemic butterfly species with the inclusion of a BLM ('PrioritizedArea_EndemicSpecies.tif')

    Life history and ecological data for mammals

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    Life history and ecological data for mammals used in "The effects of body mass on immune cell concentrations of terrestrial mammals." Data include body mass (log-transformed), maximal longevity (log-transformed), maximal reproductive potential (log-transformed), trophic level, and sociality

    S4_Supplemental_material: Measurements performed for a morphometric description of the material

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    Measurements performed for a morphometric description of the material

    S8_Supplemental_material: Dental and bone measurements of Beremendia fissidens from five European sites

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    Dental and bone measurements (mm) of Beremendia fissidens (Petényi, 1864) from five European sites (by Reumer, 1984: 167–170). Measurements are presented as the mean, standard deviation, range, and the number of specimens in parentheses

    PredPrey_src_submitted

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    Code for individual-based model simulation

    SNP dataset for georeferenced samples of Tristaniopsis collina, T. laurina

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    Single line SNP markers (0,1,2) for 238 samples of Tristaniopsis collina and 301 T. laurina samples collected in the field. SNP calling performed by Diversity Arrays Technology, Canberra. See website for details (https://www.diversityarrays.com/). Geolocation data for samples in separate files

    Spatial Analysis

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    Selection gradients used in the spatial analysis from Clark et al. 2019 in The American Naturalist: Niche construction affects the variability and strength of selection

    Sample of 100 phylogenetic trees

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    Sample of 100 phylogenetic trees for the 1931 species included in the study, containing 50 trees for each of the backbones (Ericson & Hackett; see birdtree.org for more information)

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