Dryad Digital Repository (Duke University)

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    197463 research outputs found

    Cyprinodontiformes Species & Reference List

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    List of references used to compile the size data for Cyprinodontiformes, with references listed for each species

    Perciformes Species & Reference List

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    List of references used to compile size data for Perciformes, with references specific to each specie

    gene expression of reference genes for normalization

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    Two methods, GeNorm and NormFinder, were used to evaluate four reference genes and to choose the best gene for normalization. mraY was chosen as the best reference for qPCR normalization based on both methods

    Wanganui_Cheilostome_interactions

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    R workspace containing bryozoan data and R functions required to reproduce analyses presented in the paper. R code is in ReadMe File

    McHenry_etal_2016_Survey_Data

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    The data comes from a remotely operated vehicle (ROV) survey conducted during the summer months of 2010-2013 along the coastal Gulf of Maine shelf. The survey aimed 1) to characterize the distribution and abundance of benthic megafauna with respect to near-shore abiotic conditions, 2) to develop spatially-explicit maps of ecological attributes of near-shore benthic assemblages, and 3) use such maps to inform the application of ecological principles when engaging in marine spatial planning. This file contains a data matrix of species abundances for the most dominantly observed species (i.e., greater than 5 observations), assemblage biomass, economic value, and shannon-weiner species diversity by site, along with values of associated summertime abiotic conditions (i.e.,mean transect depth, substrate type, water-mass position, bottom temperature, bottom current speed/direction, and bottom salinity). Depth and substrate type values were recorded from the ROV surveys, while the water-mass values were acquired from HYCOM GLBu0.08 4D model output via the Marine Geo-spatial Ecology Toolbox in ArcGIS 10.3. See McHenry et al. 2016 for a full description the survey design, data processing methods, and analytical approaches used by this study

    Phenotype data

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    Phenotype data for 274 half-sib families used in association analysis (except entries 137,161,196; see Gibbs sampler file). Includes the following columns: a. TREE: identifier for individual mother trees b. METLA: alternative identifier c. POP: population identifier d. BUDSET: BLUP-estimate of breeding value of TREE (from mixed model) e. LATITUDE: latitude of origin f. POPMEAN: estimate of population mean (from mixed model)

    Supplemental Table 1

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    Raw locality, age, stratigraphic, lithological, sedimentological, faunal, and reference data used in this study

    Supplemental Table 1

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    Raw locality, age, stratigraphic, lithological, sedimentological, faunal, and reference data used in this study

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