Dryad Digital Repository (Duke University)

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    197463 research outputs found

    Western Hudson Bay pedigree (TXT)

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    Tab-delimited text file formatted for use in R (i.e., unknown parents are indicated with NA.) For use in ASReml, the data should be reformatted as columns id, sire, dam with "0" used to indicate unknown parents. For details of the pedigree, see doi: 10.1007/s00300-015-1871-

    LOCO RepeatABEL R script

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    Implements a leave-one-chromosome-out GWAS using RepeatABE

    individual-level data for superb fairy-wrens

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    The data have been collected in the wild between 1988 and 2013. They were then prepared in R. For column headings see the README file

    Nieto_Quintano_et_at_DATAsubplots

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    Species composition data (presence/absence) for 1-ha subplots, situated inside 4 plots of 25-ha (plots LWR1 and LWR2 in Lefini Reserve and plots LLR1 and LLR2 in Lesio Louna Reserve), located in the Bateke Plateau (Republic of Congo

    Field Data

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    Phenotypes for adult polar bears used for heritability calculations and GWA

    Nieto_Quintano_et_al_DATASubplots_Grass_Saplings

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    Subplot level grass data (Above ground Carbon stocks) for 4 25-ha plots in the Bateke Plateau (plots LWR1 and LWR2 in Lefini Reserve and plots LLR1 and LLR2 in Lesio Louna Reserve), and Subplot level saplings/shrubs data (Above ground Carbon stocks) for 4 25-ha plots in the Bateke Plateau (plots LWR1 and LWR2 in Lefini Reserve and plots LLR1 and LLR2 in Lesio Louna Reserve)

    RepeatABEL GWAS R script

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    Conducts a vanilla GWAS using RepeatABE

    brood-level data for superb fairy-wrens

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    The data have been collected in the wild between 1988 and 2013. They were then prepared in R. For column headings see the README file

    FisherMLselectionSQ.data

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    Data file to recreate multilevel selection analysis from "Multilevel and sex-specific selection on competitive traits in North American red squirrels

    Morrissey.et.al.2012.Am.Nat

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    R data object. List with two elements. First element is phenotypic data and covariates. Second element is pedigree in a standard three column format. The pedigree is pruned to contain only individuals with data included in this study and their ancestors that are informative with respect to the inheritance of the modelled traits

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