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Matrix model data
Data used to perform the analyses and models described in the manuscript. On the first sheet, you will find the data and on the second sheet the description of the variables and their use in the models or for generating the data to analyze
Mismatch and filtering for the rare regional pool
Same as format as the basic regional pool
Patient 1 HCV alignments
16 HCV sequence alignments for patient 1 - Core and NS5B regions, 8 time samples
Patient 2 HVC alignments
10 HCV sequence alignments for patient 2 - Core and NS5B regions, 5 time samples
Evolving Communities Two Species Raw Simulation Data (Part 4 - Asymmetric Resources & Large Mutation Size)
WARNING: ~3.3 GB when expanded. Contains all of the raw simulations data for the two-species simulations with large mutation size and an asymmetric resource distribution from the manuscript "Asymmetric Competition Impacts Evolutionary Rescue in a Changing Environment"
Seedling emergence from scats
Records of species and counts that germinated from deer and pig scats collected from the wild
Overall extinction rates
This file contains 100 subsampled iterations for the overall extinction rates to plot a basic version of Figure 1. Use with 'TimeBinningCode.R