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Evolving Communities Two Species Raw Simulation Data (Part 3 - Asymmetric Resources & High Mutation Rate)
WARNING: ~4.38 GB when expanded. Contains all of the raw simulations data for the two-species simulations with high mutation rate and asymmetric resource distribution from the manuscript "Asymmetric Competition Impacts Evolutionary Rescue in a Changing Environment". This includes the extended (to extinction) original runs in the case of slow environmental change (see Part 6a for other replicates)
R function. Evaluating the accuracy of biodiversity changes through geological times
Based on a presence/absence matrix, the function allows the back-transformation of this discretized dataset into a reconstructed continuous-time dataset. The function generates plots of taxonomic richness and Foote’s taxonomic rates variation through time and a list of the 3 different (richness, origination p rate and extinction q rate) datasets and the associated 95 % confidence interval
fourbar shape coordinates
-Morphometric coordinate data for oral jaw fourbar shapes of Malagasy cichlids, averaged by species
hypothetical 4bars, MKT
- Morphometric coordinate data for oral jaw fourbar shapes estimated across the fourbar morphospace (i.e., plot of PCs 1 and 2 in manuscript fig. 5 and fig. S1).
- “PC1” and “PC2” are scores that denote the location on a PC plot of each set of fourbar coordinates that follow.
- “MKT” is the maxillary kinematic transmission for each set of fourbar coordinates
egg volume
contains size measurements for individual eggs (corresponds to descriptive statistics in Figure 1 of the main text
Preadult viability data
Sheet 1. Means by Line and Temperature for the three populations, Sheet 2. Means by replicate, Sheet 3. Variance components, Sheet 4. Phenotypic plasticit
Meliphagides MCC Tree
Maximum clade credibility tree of the Meliphagides from the study of Marki et al. (2017) Mol. Phylogen. Evol