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Procédure transfert de données sur l'infrastructure de Toulouse
No full textDocument proposé pour préparer au mieux l'école thématique Aviesan 2015 à la station biologique de Roscoff
Formation Intégration d'outils dans la plateforme web GALAXY version 2015
No full textPresentation\ud
Biological data analysys requires more use of IT resources and environments often hard to understand for Biologists.\ud
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This training session presents the use of Galaxy environment for programmers\ud
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Goals\ud
Galaxy tools integration principles. Understand Galaxy filesystem organization, write xml descriptors and python wrappers, start a new tool shed instance and use it in the dev processes .\ud
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Organisation\ud
The training session is composed by a short theoretical presentation..
Public participation in soil surveys: lessons from a pilot study in England
No full textIn many countries there are policies in place that impact on soils, but very few legislative or policy tools specifically for the protection of soil. Recent EU legislative proposals on soil protection have been met with opposition on the grounds of excessive cost and resource demands. With the need for evidence based policy, and recognition that involving the public in environmental monitoring is an effective way of increasing understanding and commitment, there has been growing interest in..
Galaxy Workbench for Metagenomics
No full textGalaxy Docker repository for metagenomics (Galaxy metagenomics flavour
Science communication for biodiversity conservation
No full textThe unsustainable exploitation of nature by humanity has pushed many of the earth’s ecological systems to the brink of collapse. To help bring about the societal changes needed to reverse this trend, conservation biologists need to be more proactive, provocative, and purposeful in increasing environmental literacy. In this essay, we highlight different ways that scientists can engage various sectors of society and argue that passion, enthusiasm, and an understanding of the culture of human..
A review of citizen science and community-based environmental monitoring: issues and opportunities
No full textWorldwide, decision-makers and nongovernment organizations are increasing their use of citizen volunteers to enhance their ability to monitor and manage natural resources, track species at risk, and conserve protected areas. We reviewed the last 10 years of relevant citizen science literature for areas of consensus, divergence, and knowledge gaps. Different community-based monitoring (CBM) activities and governance structures were examined and contrasted. Literature was examined for evidence..
La réactualisation de la contribution des amateurs à la botanique
No full textD’importantes mutations techniques, organisationnelles et institutionnelles sont en voie de modifier en profondeur les modalités de la production scientifique et de reconfigurer la relation qu’entretiennent les personnes ordinaires (les non scientifiques) avec les mondes scientifiques....
STACKS populations: Run the STACKS populations program
No full textThe tool is available in the GenOuest Galaxy instance here\ud
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This program, part of the STACKS pipeline, will be executed in place of the genotypes program when a population is being processed through the pipeline. A map specifiying which individuals belong to which population is submitted to the program and the program will then calculate population genetics statistics, expected/observed heterzygosity, π, and FIS at each nucleotide position. The populations program will compare all..
