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Comparison of a digital iodine-specific dietary screener with 24-hour recall and urinary iodine concentration
Get PDFMild-to-moderate iodine deficiency remains a problem worldwide, including in Norway. Of particular, concern is fertile, pregnant and lactating women. The Norwegian Dairy Council developed a digital iodine-specific dietary screener (I-screener) for the assessment of iodine intake levels but has yet to be validated. The aim was thus to investigate the relative validity of the I-screener by comparing estimates of iodine intake from the I-screener against a single 24-hour recall (24HR) and urinary iodine concentration (UIC) in fertile women. Healthy females were recruited in Bergen in August–December 2021. Six spot-urine samples from six consecutive days were collected into a pooled sample to assess UIC. Each participant completed a single administration of the I-screener and the 24HR. The estimated daily iodine intake from the I-screener was compared with the estimations from the 24HR and UIC. Seventy-two women aged 19–39 completed the study. The median UIC was 76 μg/l. Compared with the 24HR, the I-screener placed 83 % of the participants in the same/adjacent tertial, with a slight agreement between the methods (Cohen's kappa = 0⋅187). The present study shows an acceptable correlation between the I-screener and the 24HR (r = 0⋅318), but not between the I-screener and UIC (r = 0⋅122). Despite its varying iodine estimate abilities, the I-screener may be used as an initial screening tool to rank fertile women on an individual level into deficient inadequate, and sufficient iodine intake. However, due to the relatively high risk of misclassification, further assessment of iodine status should follow.publishedVersio
Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species
Get PDFMethylation of cytosines is a prototypic epigenetic modification of the DNA. It has been implicated in various regulatory mechanisms across the animal kingdom and particularly in vertebrates. We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale DNA methylation profiles of multiple organs. Bioinformatic analysis of this large dataset quantified the association of DNA methylation with the underlying genomic DNA sequence throughout vertebrate evolution. We observed a broadly conserved link with two major transitions—once in the first vertebrates and again with the emergence of reptiles. Cross-species comparisons focusing on individual organs supported a deeply conserved association of DNA methylation with tissue type, and cross-mapping analysis of DNA methylation at gene promoters revealed evolutionary changes for orthologous genes. In summary, this study establishes a large resource of vertebrate and invertebrate DNA methylomes, it showcases the power of reference-free epigenome analysis in species for which no reference genomes are available, and it contributes an epigenetic perspective to the study of vertebrate evolution.Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal speciespublishedVersio
Knockout of Targeted Plasmid-Borne β-Lactamase Genes in an Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strain: Impact on Resistance and Proteomic Profile
Get PDFResistance to β-lactams is known to be multifactorial, although the underlying mechanisms are not well established. The aim of our study was to develop a system for assessing the phenotypic and proteomic responses of bacteria to antibiotic stress as a result of the loss of selected antimicrobial resistance genes. We applied homologous recombination to knock out plasmid-borne β-lactamase genes (blaOXA-1, blaTEM-1, and blaCTX-M15) in Escherichia coli CCUG 73778, generating knockout clone variants lacking the respective deleted β-lactamases. Quantitative proteomic analyses were performed on the knockout variants and the wild-type strain, using bottom-up liquid chromatography tandem mass spectrometry (LC-MS/MS), after exposure to different concentrations of cefadroxil. Loss of the blaCTX-M-15 gene had the greatest impact on the resulting protein expression dynamics, while losses of blaOXA-1 and blaTEM-1 affected fewer proteins’ expression levels. Proteins involved in antibiotic resistance, cell membrane integrity, stress, and gene expression and unknown function proteins exhibited differential expression. The present study provides a framework for studying protein expression in response to antibiotic exposure and identifying the genomic, proteomic, and phenotypic impacts of resistance gene loss.publishedVersio
A fluke encounter: first record of the blue whale (Balaenoptera musculus) within the central North Sea, United Kingdom
Get PDFDespite holding the accolade as the largest animal ever to live on planet earth and ubiquitously inhabiting the world's major oceans, an acute paucity of information surrounds the geographical distribution and migration phenology of the endangered blue whale (Balaenoptera musculus) in the northeast Atlantic. Current migration and distribution information derived from robust scientific studies is required to ensure the formulation and implementation of successful conservation measures with a vision to support the ongoing recovery of the northeast Atlantic population. At 10:21 (UTC) on the 9th of November 2020, two blue whales were observed at position 55°13.99′N, 01°13.62′W, 18 km off the coast of the UK in the central North Sea just north of Newcastle at a water depth of 76 m. This is the first paper that has confirmed an account of live blue whales frequenting shallow waters of the central North Sea and represents a new area of occurrence within the accepted range of the northeast Atlantic population, an area in which sightings are extremely rare and may provide insight into the intricacies of migration routes and behaviour.publishedVersio
Population structure and connectivity in the genus Molva in the Northeast Atlantic
Get PDFIn fisheries, operational management units and biological data often do not coincide. In many cases, this is not even known due to the lack of information about a species’ population structure or behaviour. This study focuses on two such species, the common ling Molva molva and the blue ling M. dypterygia, two Northeast Atlantic gadoids with overlapping geographical distribution, but different depth habitats. Heavily exploited throughout their ranges, with declining catches, little is known about their population structure. Genotyping-by-sequencing at thousands of genetic markers indicated that both species are separated into two major groups, one represented by samples from the coasts of western Scotland, Greenland, and the Bay of Biscay and the other off the coast of Norway. This signal is stronger for the deeper dwelling blue ling, even though adult dispersal was also identified for this species. Despite small sample sizes, fine-scale patterns of genetic structure were identified along Norway for common ling. Signatures of adaptation in blue ling consisted in signs of selections in genes involved in vision, growth, and adaptation to cold temperatures.publishedVersio
Disentangling the key drivers of salmon louse Lepeophtheirus salmonis fecundity using multiyear field samples
Get PDFPlanktonic salmon louse Lepeophtheirus salmonis salmonis larvae produced at sal - mon farms spread to and infect both wild and farmed salmonids. Understanding and forecasting the production and distribution of these larval stages from farms is critical to aquaculture management. However, model forecasts are based on available data and therefore include parameters with limited empirical support. This investigation examined salmon louse fecundity with a focus on batch egg clutch size by collecting lice from farmed Atlantic salmon Salmo salar at multiple farms and from wild Atlantic salmon and sea trout S. trutta captured at field sites throughout Norway. The data were analyzed with mixed effects models and total length of female lice was identified as the primary determinant of clutch size. Further analysis revealed that female louse total length is partially explained by temperature at sampling. However, if the temperature at sampling is spatially or temporally disconnected from rearing temperature, it may not be possible to predict the total length of a louse using temperature. The fecundity investigation further found that 66% of female lice on farmed salmon were sexually mature, and 10% of these were not egg-bearing. In comparison, 73% of adult female lice on sea trout were sexually mature, and 40% of these were not egg-bearing. Our results indicate that salmon louse production forecasts would be improved by incorporating female louse sexual maturity and a clutch size parameter that is related to total length of female lice.publishedVersio
Revisiting ecological carrying capacity indices for bivalve culture
Get PDFEcological carrying capacity (ECC) indices for bivalve culture rely on key ecosystem turnover rates: 1. clearance time (CT), the time needed for the cultured bivalves to filter the entire bay volume; 2. renewal time (RT), the time required to replace the entire bay volume with external water; and 3. production time (PT), the time needed for phytoplankton biomass renewal via local primary production. These turnover rates are conceptually straightforward but lack measurement standardizations in the context of ECC assessments. This study compares simple turnover rate methods with more complex approaches designed to address key assumptions and improve accuracy. Method comparisons were performed across multiple embayments (systems) in Prince Edward Island, Canada. When crop aggregation and system-scale refiltration effects were considered, CT increased by a factor of 14 to 22 depending on the system and species under cultivation. Seasonal temperature considerations further impacted CT by a factor of 38 to 142. Regarding RT, validated hydrodynamic models and tidal prism models produced remarkably different outcomes; the tidal prism approach underestimated RT by 77–94% across the studied systems. Conversely, PT was unaffected by contrasting phytoplankton parameterization; pre-aquaculture (1969–1970) and contemporary (2011−2012) datasets led to similar PT outcomes. However, other metrics revealed a contemporary shift towards low phytoplankton biomass and smaller phytoplankton cells (picophytoplankton); these observations suggest that PT provides insufficient granularity regarding microalgae biomass replacement. Overall, the study rejects a common assumption that the bay-scale turnover rates serving the conventional CT/RT and CT/PT indices can be easily and accurately parameterized; these indices should be used cautiously in assessing the sustainability of farming activities.publishedVersio
Co-exposure to UV radiation and crude oil increases acute embryotoxicity and sublethal malformations in the early life stages of Atlantic haddock (Melanogrammus aeglefinus)
Get PDFCrude oil causes severe abnormalities in developing fish. Photomodification of constituents in crude oil increases its toxicity several fold. We report on the effect of crude oil, in combination with ultraviolet (UV) radiation, on Atlantic haddock (Melanogrammus aeglefinus) embryos. Accumulation of crude oil on the eggshell makes haddock embryos particularly susceptible to exposure. At high latitudes, they can be exposed to UV radiation many hours a day. Haddock embryos were exposed to crude oil (5–300 μg oil/L nominal loading concentrations) for three days in the presence and absence of UV radiation (290–400 nm). UV radiation partly degraded the eggs' outer membrane resulting in less accumulation of oil droplets in the treatment with highest oil concentration (300 μg oil/L). The co-exposure treatments resulted in acute toxicity, manifested by massive tissue necrosis and subsequent mortality, reducing LC50 at hatching stage by 60 % to 0.24 μg totPAH/L compared to 0.62 μg totPAH/L in crude oil only. In the treatment with nominal low oil concentrations (5–30 μg oil/L), only co-exposure to UV led to sublethal morphological heart defects. Including phototoxicity as a parameter in risk assessments of accidental oil spills is recommended.publishedVersio
To Be, or Not to Be: That Is the Hamletic Question of Cryptic Evolution in the Eastern Atlantic and Mediterranean Raja miraletus Species Complex
Get PDFDespite a high species diversity, skates (Rajiformes) exhibit remarkably conservative morphology and ecology. Limited trait variations occur within and between species, and cryptic species have been reported among sister and non-sister taxa, suggesting that species complexes may be subject to stabilising selection. Three sibling species are currently recognised in the Raja miraletus complex: (i) R. miraletus occurring along the Portuguese and Mediterranean coasts, (ii) R. parva in the Central-Eastern Atlantic off West Africa and (iii) R. ocellifera in the Western Indian Ocean off South Africa. In the present study, the genetic variation at mitochondrial and nuclear markers was estimated in the species complex by analysing 323 individuals sampled across most of its geographical distribution area to test the hypothesis that restricted gene flow and genetic divergence within species reflect known climate and bio-oceanographic discontinuities. Our results support previous morphological studies and confirm the known taxonomic boundaries of the three recognised species. In addition, we identified multiple weakly differentiated clades in the Northeastern Atlantic Ocean and Mediterranean, at least two additional cryptic taxa off Senegal and Angola, a pronounced differentiation of ancient South African clades. The hidden genetic structure presented here may represent a valuable support to species’ conservation action plans.publishedVersio
Sampling of Atlantic salmon using the Norwegian Quality cut (NQC) vs. Whole fillet; differences in contaminant and nutrient contents
Get PDFRisk- benefit assessments of seafood require high-quality food composition data. In accordance with EU regulations, Atlantic salmon (Salmo salar) has conventionally been sampled using the Norwegian Quality Cut (NQC), a sub-cut of the middle section of the fish, in Norwegian surveillance programs. By comparing the contents of nutrients and contaminants in 34 samples of farmed Atlantic salmon, we aimed to evaluate the representativeness of the NQC compared with the whole fillet. Of the 129 analytes evaluated, eight single analytes, in addition to 25 different fatty acids, showed significant differences between the cuts. Significant differences were evident for total fat, including eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), and sum PCB-6, but not for the sum of dioxins and dioxin-like PCBs. We further suggest that the NQC may still be used in large-scale sampling of Atlantic salmon, and that the whole fillet would be preferable when analysing the content of nutrients.publishedVersio