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Opening the Woods: Towards a Quantification of Neolithic Clearance Around the Somerset Levels and Moors
Get PDFEnvironmental reconstructions from pollen records collected within archaeological landscapes have traditionally taken a broadly narrative approach, with few attempts made at hypothesis testing or formal assessment of uncertainty. This disjuncture between the traditional interpretive approach to palynological data and the requirement for detailed, locally specific reconstructions of the landscapes in which people lived has arguably hindered closer integration of palaeoecological and archaeological datasets in recent decades. Here we implement a fundamentally different method for reconstructing past land cover from pollen records to the landscapes of and around the Somerset Levels and Moors—the Multiple Scenario Approach (MSA)—to reconstruct land cover for a series of 200-year timeslices covering the period 4200–2000 cal BC. Modelling of both archaeological and sediment chronologies enables the integration of reconstructed changes in land cover with archaeological evidence of contemporary Neolithic human activity. The MSA reconstructions are presented as a series of land cover maps and as graphs of quantitative measures of woodland clearance tracked over time. Our reconstructions provide a more nuanced understanding of the scale and timing of Neolithic clearance than has previously been available from narrative-based interpretations of pollen data. While the archaeological record tends to promote a view of long-term continuity in terms of the persistent building of wooden structures in the wetlands, our new interpretation of the palynological data contributes a more dynamic and varying narrative. Our case study demonstrates the potential for further integration of archaeological and palynological datasets, enabling us to get closer to the landscapes in which people lived.Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
The attached file is the published pdf.NHM Repositor
What’s the catch with lumpsuckers? A North Atlantic study of seabird bycatch in lumpsucker gillnet fisheries
Get PDFWorldwide, incidental bycatch in fisheries is a conservation threat to many seabird species. Although knowledge on bycatch of seabirds has increased in the last decade, most stems from longline fisheries and the impacts of coastal gillnet fisheries are poorly understood. Gillnet fishing for North Atlantic lumpsucker (Cyclopterus lumpus) is one such fishery. We collated and synthesized the available information on seabird bycatch in lumpsucker gillnet fisheries across the entire geographical range to estimate and infer the magnitude of their impact on the affected seabird populations. Most birds killed were diving ducks, cormorants and auks, and each year locally high numbers of seabirds were taken as bycatch. We found large differences in bycatch rates among countries. The estimated mean bycatch in Iceland was 2.43 birds/trip, while the estimates in Norway was 0.44 and 0.39 birds/trip, respectively. The large disparities between estimates might reflect large spatial differences in bycatch rates, but could partly also arise due to distinctions in data recorded by onboard inspectors (Iceland), self-administered registration (Norway) and direct observations by cameras (Denmark). We show that lumpsucker gillnet fisheries might pose a significant risk to some populations of diving seabirds. However, a distinct data deficiency on seabird bycatch in terms of spatio-temporal coverage and the age and origins of the birds killed, limited our abilities to fully assess the extent and population consequences of the bycatch. Our results highlight the need for a joint effort among countries to standardize monitoring methods to better document the impact of these fisheries on seabirds.© 2019 The Authors. Published by Elsevier Ltd. This is an open access article under the CC BY license (http://creativecommons.org/licenses/BY/4.0/). The attached file is the published pdf.NHM Repositor
SYNTHESYS+ Virtual Access - Report on the Ideas Call (October to November 2019)
Get PDFThe SYNTHESYS consortium has been operational since 2004, and has facilitated physical access by individual researchers to European natural history collections through its Transnational Access programme (TA). For the first time, SYNTHESYS+ will be offering virtual access to collections through digitisation, with two calls for the programme, the first in 2020 and the second in 2021. The Virtual Access (VA) programme is not a direct digital parallel of Transnational Access - proposals for collections digitisation will be prioritised and carried out based on community demand, and data must be made openly available immediately. A key feature of Virtual Access is that, unlike TA, it does not select the researchers to whom access is provided. Because Virtual Access in this way is new to the community and to the collections-holding institutions, the SYNTHESYS+ consortium invited ideas through an Ideas Call, that opened on 7th October 2019 and closed on 22nd November 2019, in order to assess interest and to trial procedures. This report is intended to provide feedback to those who participated in the Ideas Call and to help all applicants to the first SYNTHESYS+Virtual Access Call that will be launched on 20th of February 2020.This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. The attached file is the published pdf.NHM Repositor
Analyses of mitochondrial amino acid sequence datasets support the proposal that specimens of Hypodontus macropi from three species of macropodid hosts represent distinct species
Get PDFBackground: Hypodontus macropi is a common intestinal nematode of a range of kangaroos and wallabies
(macropodid marsupials). Based on previous multilocus enzyme electrophoresis (MEE) and nuclear ribosomal DNA
sequence data sets, H. macropi has been proposed to be complex of species. To test this proposal using
independent molecular data, we sequenced the whole mitochondrial (mt) genomes of individuals of H. macropi
from three different species of hosts (Macropus robustus robustus, Thylogale billardierii and Macropus [Wallabia]
bicolor) as well as that of Macropicola ocydromi (a related nematode), and undertook a comparative analysis of the
amino acid sequence datasets derived from these genomes.
Results: The mt genomes sequenced by next-generation (454) technology from H. macropi from the three host
species varied from 13,634 bp to 13,699 bp in size. Pairwise comparisons of the amino acid sequences predicted
from these three mt genomes revealed differences of 5.8% to 18%. Phylogenetic analysis of the amino acid
sequence data sets using Bayesian Inference (BI) showed that H. macropi from the three different host species
formed distinct, well-supported clades. In addition, sliding window analysis of the mt genomes defined variable
regions for future population genetic studies of H. macropi in different macropodid hosts and geographical regions
around Australia.
Conclusions: The present analyses of inferred mt protein sequence datasets clearly supported the hypothesis that
H. macropi from M. robustus robustus, M. bicolor and T. billardierii represent distinct species.© 2013 Jabbar et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative
Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and
reproduction in any medium, provided the original work is properly cited.NHM Repositor
Reptile-like physiology in Early Jurassic stem-mammals
Get PDFDespite considerable advances in knowledge of the anatomy, ecology and evolution of early mammals, far less is known about their physiology. Evidence is contradictory concerning the timing and fossil groups in which mammalian endothermy arose. To determine the state of metabolic evolution in two of the earliest stem-mammals, the Early Jurassic Morganucodon and Kuehneotherium, we use separate proxies for basal and maximum metabolic rate. Here we report, using synchrotron X-ray tomographic imaging of incremental tooth cementum, that they had maximum lifespans considerably longer than comparably sized living mammals, but similar to those of reptiles, and so they likely had reptilian-level basal metabolic rates. Measurements of femoral nutrient foramina show Morganucodon had blood flow rates intermediate between living mammals and reptiles, suggesting maximum metabolic rates increased evolutionarily before basal metabolic rates. Stem mammals lacked the elevated endothermic metabolism of living mammals, highlighting the mosaic nature of mammalian physiological evolution.Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.NHM Repositor
Grammatikopoulosite, NiVP, a New Phosphide from the Chromitite of the Othrys Ophiolite, Greece
Get PDFGrammatikopoulosite, NiVP, is a new phosphide discovered in the podiform chromitite and hosted in the mantle sequence of the Othrys ophiolite complex, central Greece. The studied samples were collected from the abandoned chromium mine of Agios Stefanos. Grammatikopoulosite forms small crystals (from 5 μm up to about 80 μm) and occurs as isolated grains. It is associated with nickelphosphide, awaruite, tsikourasite, and an undetermined V-sulphide. It is brittle and has a metallic luster. In plane-polarized light, it is creamy-yellow, weakly bireflectant, with measurable but not discernible pleochroism and slight anisotropy with indeterminate rotation tints. Internal reflections were not observed. Reflectance values of mineral in air (R1, R2 in %) are: 48.8–50.30 at 470 nm, 50.5–53.5 at 546 nm, 51.7–55.2 at 589 nm, and 53.2–57.1 at 650 nm. Five spot analyses of grammatikopoulosite give the average composition: P 19.90, S 0.41, Ni 21.81, V 20.85, Co 16.46, Mo 16.39, Fe 3.83, and Si 0.14, total 99.79 wt %. The empirical formula of grammatikopoulosite—based on Σ(V + Ni + Co + Mo + Fe + Si) = 2 apfu, and taking into account the structural results—is (Ni0.57Co0.32Fe0.11)Σ1.00(V0.63Mo0.26Co0.11)Σ1.00(P0.98S0.02)Σ1.00. The simplified formula is (Ni,Co)(V,Mo)P and the ideal formula is NiVP, which corresponds to Ni 41.74%, V 36.23%, P 22.03%, total 100 wt %. The density, calculated on the basis of the empirical formula and single-crystal data, is 7.085 g/cm3. The mineral is orthorhombic, space group Pnma, with a = 5.8893(8), b = 3.5723(4), c = 6.8146(9) Å, V = 143.37(3) Å3, and Z = 4. The mineral and its name have been approved by the Commission of New Minerals, Nomenclature and Classification of the International Mineralogical Association (IMA 2019-090). The mineral honors Tassos Grammatikopoulos, geoscientist at the SGS Canada Inc., for his contribution to the economic mineralogy and mineral deposits of Greece.This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.NHM Repositor
Hybrid capture data unravel a rapid radiation of pimpliform parasitoid wasps (Hymenoptera: Ichneumonidae: Pimpliformes)
Get PDFThe parasitoid wasp family Ichneumonidae is among the most diverse groups of organisms, with conservative estimates suggesting that it contains more species than all vertebrates together. However, ichneumonids are also among the most severely understudied groups, and our understanding of their evolution is hampered by the lack of a robust higher‐level phylogeny of this group. Based on newly generated transcriptome sequence data, which were filtered according to several criteria of phylogenetic informativeness, we developed target DNA enrichment baits to capture 93 genes across species of Ichneumonidae. The baits were applied to DNA of 55 ichneumonids, with a focus on Pimpliformes, an informal group containing nine subfamilies. Phylogenetic trees were inferred under maximum likelihood and Bayesian approaches, at both the nucleotide and amino acid levels. We found maximum support for the monophyly of Pimpliformes but low resolution and very short branches close to its base, strongly suggesting a rapid radiation. Two genera and one genus‐group were consistently recovered in unexpected parts of the tree, prompting changes in their higher‐level classification: Pseudorhyssa Merrill, currently classified in the subfamily Poemeniinae, is transferred to the tribe Delomeristini within Pimplinae, and Hemiphanes Förster is moved from Orthocentrinae to Cryptinae. Likewise, the tribe Theroniini is resurrected for the Theronia group of genera (stat. rev.). Phylogenetic analyses, in which we gradually increased the numbers of genes, revealed that the initially steep increase in mean clade support slows down at around 40 genes, and consideration of up to 93 genes still left various nodes in the inferred phylogenetic tree poorly resolved. It remains to be shown whether more extensive gene or taxon sampling can resolve the early evolution of the pimpliform subfamilies.This is the pre-peer reviewed version of the following article: Klopfstein, S., Langille, B., Spasojevic, T., Broad, G.R., Cooper, S.J.B., Austin, A.D. and Niehuis, O. (2019), Hybrid capture data unravel a rapid radiation of pimpliform parasitoid wasps (Hymenoptera: Ichneumonidae: Pimpliformes). Syst Entomol, 44: 361-383. , which has been published in final form at doi:10.1111/syen.12333. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving The attached document is the authors’ submitted version of the journal article. You are advised to consult the publisher’s version if you wish to cite from it.NHM Repositor
Climate change considerations are fundamental to management of deep‐sea resource extraction
Get PDFClimate change manifestation in the ocean, through warming, oxygen loss, increasing acidification, and changing particulate organic carbon flux (one metric of altered food supply), is projected to affect most deep‐ocean ecosystems concomitantly with increasing direct human disturbance. Climate drivers will alter deep‐sea biodiversity and associated ecosystem services, and may interact with disturbance from resource extraction activities or even climate geoengineering. We suggest that to ensure the effective management of increasing use of the deep ocean (e.g., for bottom fishing, oil and gas extraction, and deep‐seabed mining), environmental management and developing regulations must consider climate change. Strategic planning, impact assessment and monitoring, spatial management, application of the precautionary approach, and full‐cost accounting of extraction activities should embrace climate consciousness. Coupled climate and biological modeling approaches applied in the water and on the seafloor can help accomplish this goal. For example, Earth‐System Model projections of climate‐change parameters at the seafloor reveal heterogeneity in projected climate hazard and time of emergence (beyond natural variability) in regions targeted for deep‐seabed mining. Models that combine climate‐induced changes in ocean circulation with particle tracking predict altered transport of early life stages (larvae) under climate change. Habitat suitability models can help assess the consequences of altered larval dispersal, predict climate refugia, and identify vulnerable regions for multiple species under climate change. Engaging the deep observing community can support the necessary data provisioning to mainstream climate into the development of environmental management plans. To illustrate this approach, we focus on deep‐seabed mining and the International Seabed Authority, whose mandates include regulation of all mineral‐related activities in international waters and protecting the marine environment from the harmful effects of mining. However, achieving deep‐ocean sustainability under the UN Sustainable Development Goals will require integration of climate consideration across all policy sectors.This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium,
provided the original work is properly cited.
© 2020 The Authors. Global Change Biology published by John Wiley & Sons LtdNHM Repositor
ICDP workshop on the Lake Tanganyika Scientific Drilling Project: a late Miocene–present record of climate, rifting, and ecosystem evolution from the world's oldest tropical lake
Get PDFThe Neogene and Quaternary are characterized by enormous changes in global climate and environments, including global cooling and the establishment of northern high-latitude glaciers. These changes reshaped global ecosystems, including the emergence of tropical dry forests and savannahs that are found in Africa today, which in turn may have influenced the evolution of humans and their ancestors. However, despite decades of research we lack long, continuous, well-resolved records of tropical climate, ecosystem changes, and surface processes necessary to understand their interactions and influences on evolutionary processes. Lake Tanganyika, Africa, contains the most continuous, long continental climate record from the mid-Miocene (∼10 Ma) to the present anywhere in the tropics and has long been recognized as a top-priority site for scientific drilling. The lake is surrounded by the Miombo woodlands, part of the largest dry tropical biome on Earth. Lake Tanganyika also harbors incredibly diverse endemic biota and an entirely unexplored deep microbial biosphere, and it provides textbook examples of rift segmentation, fault behavior, and associated surface processes. To evaluate the interdisciplinary scientific opportunities that an ICDP drilling program at Lake Tanganyika could offer, more than 70 scientists representing 12 countries and a variety of scientific disciplines met in Dar es Salaam, Tanzania, in June 2019. The team developed key research objectives in basin evolution, source-to-sink sedimentology, organismal evolution, geomicrobiology, paleoclimatology, paleolimnology, terrestrial paleoecology, paleoanthropology, and geochronology to be addressed through scientific drilling on Lake Tanganyika. They also identified drilling targets and strategies, logistical challenges, and education and capacity building programs to be carried out through the project. Participants concluded that a drilling program at Lake Tanganyika would produce the first continuous Miocene–present record from the tropics, transforming our understanding of global environmental change, the environmental context of human origins in Africa, and providing a detailed window into the dynamics, tempo and mode of biological diversification and adaptive radiations.© Author(s) 2020. This open access article is distributed under
the Creative Commons Attribution 4.0 License.NHM Repositor
A chronostratigraphic framework for the Upper Jurassic Morrison Formation, western U.S.A.
Get PDFThe fluvial, overbank, and lacustrine deposits of the Upper Jurassic Morrison Formation of the Western Interior, U.S.A. have been intensively studied due to their diverse and well-preserved dinosaurian fauna, and the presence of economic quantities of uranium and vanadium ores. The formation crops out over 12 degrees of latitude and 1.2 million km2, and is an excellent case study for the examination of paleoecology, community structure, and evolutionary dynamics at a time in Earth's history when the climate was significantly warmer than today. However, paleoecological studies have been hampered by lack of correlation across the formation. Assuming a primarily tectonic control on fluvial architecture, we propose the first chronostratigraphic framework of the formation, which is based on sequence stratigraphy, magnetostratigraphy, and radiometric dating. The formation can be divided into three sequences each represented by a period of degradation followed by aggradation. This chronostratigraphic framework indicates that the formation youngs to the north, and was deposited over about 7 million years during the late Kimmeridgian and Tithonian. This framework provides a foundation for future sedimentological, stratigraphic, and paleobiological studies of the iconic dinosaurian fauna known from the Morrison.The attached document is the authors’ final accepted/submitted version of the journal article. You are advised to consult the publisher’s version if you wish to cite from it.NHM Repositor