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Charting the Course of Pinniped Evolution: insights from molecular phylogeny and fossil record integration
No full textAbstract
Pinnipeds (seals, sea lions, walruses, and their fossil relatives) are one of the most successful mammalian clades to live in the oceans. Despite a well-resolved molecular phylogeny and a global fossil record, a complete understanding of their macroevolutionary dynamics remains hampered by a lack of formal analyses that combine these two rich sources of information. We used a meta-analytic approach to infer the most densely sampled pinniped phylogeny to-date (36 recent and 93 fossil taxa) and used phylogenetic paleobiological methods to study their diversification dynamics and biogeographic history. Pinnipeds mostly diversified at constant rates. Walruses however experienced rapid turnover in which extinction rates ultimately exceeded speciation rates from 12-6 Ma, possibly due to changing sea-levels and/or competition with otariids (eared seals). Historical biogeographic analyses including fossil data allowed us to confidently identify the North Pacific and the North Atlantic (plus or minus Paratethys) as the ancestral ranges of Otarioidea (eared seals + walrus) and crown phocids (earless seals), respectively. Yet, despite the novel addition of stem pan-pinniped taxa, the region of origin for Pan-Pinnipedia remained ambiguous. These results suggest further avenues of study in pinnipeds and provide a framework for investigating other groups with substantial extinct and extant diversity.Copyright © The Author(s) 2024. Published by Oxford University Press on behalf of The Society for the Study of Evolution (SSE). This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https:// creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. The linked document is the published version of the article.NHM Repositor
Two new species and a new record of the Encarsia longifasciata-group (Hymenoptera, Aphelinidae) from Malaysia and China
Get PDFThe genus Encarsia Förster, 1878, which is the largest genus of the family Aphelinidae, contains 453 valid species worldwide. Most species of Encarsia with known biology are primary endoparasitoids of Aleyrodidae and Diaspididae.
Species of the Encarsia longifasciata-group from Malaysia and China are reviewed. This is the first record of this group from Malaysia. Two new species, E. borneensis Geng & Li sp. n. and E. pauroseta Geng & Li sp. n., are described and illustrated. Encarsia longifasciata is newly recorded from Malaysia (Borneo). An updated key to the longifasciata-group species (females) worldwide is provided.Copyright © Geng H et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. The attached file is the published version of the article.NHM Repositor
Palaeoenvironment and taphonomy of the Hypsilophodon Bed, Lower Cretaceous Wessex Formation, Isle of Wight
No full textThe Hypsilophodon Bed occurs at the top of the Wessex Formation (Early Cretaceous, Barremian) on the Isle of Wight, southern England. Numerous remains of the small ornithopod dinosaur Hypsilophodon foxii have been recovered from the bed since the mid-nineteenth century. Previous theories for these fossil occurrences have focused on catastrophic mass death events, including miring and flood-related mortality. However, only limited sedimentological and taphonomic analyses of the horizon and its fossil assemblage have been undertaken, hindering efforts to evaluate different theories about how the assemblage formed. Here, we report a sedimentological study of the bed to constrain its depositional environment, an examination of the matrix from Hypsilophodon fossils to identify where they were collected from within the bed, and a taphonomic investigation of Hypsilophodon specimens. Our results indicate a floodplain environment, which later became a marsh and then mudflats at the edge of a lagoon. Hypsilophodon fossils are spatially and stratigraphically distributed throughout the bed. The specimens are largely incomplete and unabraded, suggesting that most perished on, or near to, the floodplain and may have lain exposed for some time prior to burial. Overall, the evidence suggests that the fossil assemblage of the Hypsilophodon Bed formed as an accumulation of remains over time.Copyright © 2024 The Author(s). This is an Open Access article distributed under the terms of the Creative Commons Attribution Licence (https://creativecommons.org/licenses/by/4.0/deed.en). Published by the Geological Society of London. The linked file is the published version of the article.NHM Repositor
Forest leaf litter beetles of Taiwan: first DNA barcodes and first insight into the fauna
Get PDFWe report the publication of 953 DNA barcodes of forest leaf litter beetles from central Taiwan, in total representing 334 species of 36 beetle families. This is the first bulk of data from the Taiwanese Leaf Litter beetles project focused on uncovering the under-explored diversity of leaf litter beetles across Taiwan. Based on these data, we provide the first records of the following taxa for Taiwan: family Sphindidae (genus Aspidiphorus Ziegler, 1821); tribes Trichonychini, Ctenistini, and Bythinoplectini (all Staphylinidae: Pselaphinae); genera Gyrelon Hinton, 1942, Thyroderus Sharp, 1885, Cautomus Sharp, 1885 (all Cerylonidae), Dermatohomoeus Hlisnikovský, 1963 (Leiodidae), Paraploderus Herman, 1970 (Staphylinidae: Oxytelinae), Thinocharis Kraatz, 1859 (Staphylinidae: Paederinae), Cephennodes Reitter, 1884, Napoconnus Franz, 1957 (both Staphylinidae: Scydmaeninae), Bicava Belon, 1884 (Latridiidae), Otibazo Morimoto, 1961, Seleuca Pascoe, 1871 and Acallinus Morimoto, 1962 (all Curculionidae); species Oodes (Lachnocrepis) japonicus (Bates, 1873) (Carabidae: Licininae), Drusilla obliqua (Bernhauer, 1916) (Staphylinidae: Aleocharinae) and Coccotrypes advena Blandford, 1894 (Curculionidae: Scolytinae). The records of Anapleus Horn, 1873 (Histeridae) and Batraxis Reitter, 1882 (Staphylinidae: Pselaphinae) have been confirmed. The male of Sivacrypticus taiwanicus Kaszab, 1964 (Archeocrypticidae) is described for the first time. Gyrelon jenpani Hu, Fikáček & Matsumoto, sp. nov. (Cerylonidae) is described, illustrated, and compared with related species. DNA barcodes associated larvae of 42 species with adults, we are concisely illustrating some of these: Oodes japonicus, Perigona cf. nigriceps Dejean, 1831 (both Carabidae), Ptilodactyla sp. (Ptilodactylidae), Maltypus ryukyuanus Wittmer, 1970 (Cantharidae), Drusilla obliqua, Myrmecocephalus brevisulcus (Pace, 2008), Diochus sp., Mimopinophilus sp. (all Staphylinidae), Stelidota multiguttata Reitter, 1877, Lasiodites inaequalis (Grouvelle, 1914) (both Nitidulidae), Lagria scutellaris Pic, 1910, and Anaedus spinicornis Kaszab, 1973 (both Tenebrionidae). We also report the first cases of Rickettsia infections in Scydmaeninae and Pselaphinae. All data (sequences, metadata, and voucher photos) are made public in BOLD database and in a Zenodo Archive.Copyright Fang-Shuo Hu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. The attached file is the published version of the article.NHM Repositor
Quantitative photography for rapid, reliable measurement of marine macro‐plastic pollution
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Plastics are now ubiquitous in the environment and have been studied in wildlife and in ecosystems for more than 50 years. Measurement of size, shape and colour data for individual fragments of plastic is labour‐intensive, unreliable and prone to observer bias, particularly when it comes to assessment of colour, which relies on arbitrary and inconsistently defined colour categorisations. There is a clear need for a standard method for data collection on plastic pollution, particularly one that can be readily automated given the number of samples involved.
This study describes a new method for standardised photography of marine plastics in the 1–100 mm size range (meso‐ and macro‐plastics), including colour correction to account for any image‐to‐image variation in lighting that may impact colour reproduction or apparent brightness. Automated image analysis is then applied to detect individual fragments of plastic for quantitative measurement of size, shape, and colour.
The method was tested on 3793 fragments of debris ingested by Flesh‐footed Shearwaters (Ardenna carneipes) on Lord Howe Island, Australia, and compare results from photos taken in two separate locations using different equipment. Photos were acquired of up to 250 fragments at a time with a spatial resolution of 70 μm/pixel and were colour‐corrected using a reference chart to ensure accurate reproduction of colour. The automated image analysis pipeline was found to have a 98% success rate at detecting fragments, and the different size and shape parameters that can be outputted by the pipeline were compared in terms of usefulness.
The evidence shown in this study should strongly encourage the uptake of this method for cataloguing macro‐scale plastic pollution, as it provides substantially higher quality data with accurate, reliable measurements of size, shape and colour for individual plastics that can be readily compared between disparate datasets.Marie Skłodowska-Curie Action
PLASTISCAN
MSCA Grant Number: 101030480Copyright© 2023 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.NHM Repositor
Fenestella and other bryozoans in the Carboniferous rocks of the British Isles
Get PDFAsk a geologist to name a fossil bryozoan found in the rocks of the British Isles and the most likely answer will be Fenestella. The net-like fossils of Fenestella are especially abundant in the Carboniferous Limestone (Figs 1 and 2), although the genus, as used in its broadest sense, is also present in the Silurian, Devonian and Permian deposits of Britain.The attached file is the submitted version of the article. You are advised to consult the published version if you wish to cite from it
A Tube-Dwelling Early Cambrian Lobopodian
No full textFacivermis yunnanicus [1, 2] is an enigmatic worm-like animal from the early Cambrian Chengjiang Biota of Yunnan Province, China. It is a small (<10 cm) bilaterian with five pairs of spiny anterior arms, an elongated body, and a swollen posterior end. The unusual morphology of Facivermis has prompted a history of diverse taxonomic interpretations, including among annelids [1, 3], lophophorates [4], and pentastomids [5]. However, in other studies, Facivermis is considered to be more similar to lobopodians [2, 6-8]-the fossil grade from which modern panarthropods (arthropods, onychophorans, and tardigrades) are derived. In these studies, Facivermis is thought to be intermediate between cycloneuralian worms and lobopodians. Facivermis has therefore been suggested to represent an early endobenthic-epibenthic panarthropod transition [6] and to provide crucial insights into the origin of paired appendages [2]. However, the systematic affinity of Facivermis was poorly supported in a previous phylogeny [6], partially due to incomplete understanding of its morphology. Therefore, the evolutionary significance of Facivermis remains unresolved. In this study, we re-examine Facivermis from new material and the holotype, leading to the discovery of several new morphological features, such as paired eyes on the head and a dwelling tube. Comprehensive phylogenetic analyses using parsimony, Bayesian inference, and maximum likelihood all support Facivermis as a luolishaniid in a derived position within the onychophoran stem group rather than as a basal panarthropod. In contrast to previous studies, we therefore conclude that Facivermis provides a rare early Cambrian example of secondary loss to accommodate a highly specialized tube-dwelling lifestyle.Copyright © 2020 The Authors. Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). The linked file is the published version of the article.NHM Repositor
Internal conulariid structures unveiled using µCT
No full textAbstract
An extensive sample of well-preserved conulariids from the Pennsylvanian of the North American Midcontinent (Texas and Oklahoma, USA) have been studied using X-ray micro-Computed Tomography (µCT) and have shown structures identified as longitudinal muscle bundles and a potential gastric cavity. These unequivocal structures appear in several specimens coming from different sites. Their preservation varies from a gastric cavity with muscle bundles in some individuals to only longitudinal muscle bundles in others. The muscle bundles fuse apically or medially, normally forming V-shaped pairs, and they extend along the theca/exoskeleton, parallel to the corner, towards the aperture. Longitudinal bundles have predominant perradial positions. Although there have been some articles on conulariid soft parts, most of them refer to relic soft parts. This is the first time that these structures are shown using µCT. Discovery of conulariid soft parts contributes to knowledge of metazoan evolutionary history.Copyright © Crown 2023. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The linked file is the published version of the article.NHM Repositor
The Winchcombe meteorite—A regolith breccia from a rubble pile <scp>CM</scp> chondrite asteroid
No full textAbstract The Winchcombe meteorite is a CM chondrite breccia composed of eight distinct lithological units plus a cataclastic matrix. The degree of aqueous alteration varies between intensely altered CM2.0 and moderately altered CM2.6. Although no lithology dominates, three heavily altered rock types (CM2.1–2.3) represent >70 area%. Tochilinite–cronstedtite intergrowths (TCIs) are common in several lithologies. Their compositions can vary significantly, even within a single lithology, which can prevent a clear assessment of alteration extent if only TCI composition is considered. We suggest that this is due to early alteration under localized geochemical microenvironments creating a diversity of compositions and because later reprocessing was incomplete, leaving a record of the parent body's fluid history. In Winchcombe, the fragments of primary accretionary rock are held within a cataclastic matrix (~15 area%). This material is impact‐derived fallback debris. Its grain size and texture suggest that the disruption of the original parent asteroid responded by intergranular fracture at grain sizes <100 μm, while larger phases, such as whole chondrules, splintered apart. Re‐accretion formed a poorly lithified body. During atmospheric entry, the Winchcombe meteoroid broke apart with new fractures preferentially cutting through the weaker cataclastic matrix and separating the breccia into its component clasts. The strength of the cataclastic matrix imparts a control on the survival of CM chondrite meteoroids. Winchcombe's unweathered state and diversity of lithologies make it an ideal sample for exploring the geological history of the CM chondrite group.Copyright © 2022 The Authors. Meteoritics & Planetary Science published by Wiley Periodicals LLC on behalf of The Meteoritical Society. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. The linked file is the published version of the article.NHM Repositor