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Data repository for manuscript "A new approach to Health Benefits Package design: an application of the Thanzi La Onse model in Malawi"
No full textDataset to accompany the publication “A new approach to Health Benefits Package design: an application of the Thanzi La Onse model in Malawi” by Margherita Molaro, Sakshi Mohan, Bingling She, Martin Chalkley, Tim Colbourn, Joseph H. Collins, Emilia Connolly, Matthew M. Graham, Eva Janoušková, Ines Li Lin, Gerald Manthalu, Emmanuel Mnjowe, Dominic Nkhoma, Pakwanja D. Twea, Andrew N. Phillips, Paul Revill, Asif U. Tamuri, Joseph Mfutso-Bengo, Tara Mangal, and Timothy B. Hallett.
The Thanzi La Onse (TLO) model used to produce this data is open source and available for review and usage at https://github.com/UCL/TLOmodel. In particular, the outputs analysed in this study can be reproduced from model tag "Molaro_et_al_2024_HBP_design" (accessible at https://github.com/UCL/TLOmodel/tags) using the scenario file src/scripts/healthsystem/impact_of_policy/scenario_impact_of_policy.py. All analysis scripts used to generate the plots in the manuscript are located in the same directory and have filenames beginning with "analysis_impact_of_policy_".
This repository contains post-processed simulation outputs, which were generated using the script src/scripts/healthsystem/impact_of_policy/analysis_extract_data.py (available from the same tag). The data included have the following structure:
"Draw": Represents a specific prioritisation-policy, identified by the acronyms listed in Table 1 of the publication.
"Run": Represents a single simulation instance of a draw. Each draw was simulated 10 times, each with independent random sampling, resulting in 10 "runs" per draw.
The data files included in this repository are:
DALYS_by_cause_with_time.csv: DALYs (as defined in the publication) incurred on a given year due to each of the causes of DALYs considered.
HSIs_requested_by_type_and_facility_level_with_time.csv: total number of requested HSIs on a given year, broken down by HSI type and the facility level at which they were requested.
HSIs_delivered_by_type_and_facility_level_with_time.csv:total number of HSIs delivered on a given year broken down by HSI type and the facility level at which they were delivered.
Population_with_time.csv:total population size on a given year
Prevalence and causes of visual impairment among school children in Blantyre, Southern Malawi
No full textCleaned dataset of 77562 school children sampled in primary and secondary schools in Blantyre, Southern Malawi, as part of a study investigating the Prevalence and causes of visual impairment among school children in Blantyre, Southern Malawi
Additional file 1 of Prospects for the development of community-based care in remote rural areas: a stakeholder analysis in Laos
No full textAn English translation of the qualitative interview guides used in the paper, "Prospects for the development of community-based care in remote rural areas: a stakeholder analysis in Laos"
Assessment of a screening tool to aid home-based identification of adolescents (aged 10–14) living with HIV in Zambia and South Africa: HPTN 071 (PopART) study. S1 Data
No full textSupporting data for the manuscript, "Assessment of a screening tool to aid home-based identification of adolescents (aged 10–14) living with HIV in Zambia and South Africa: HPTN 071 (PopART) study". Dataset is made available by PLOS and hosted on Figshare
Source files for 3D printed hamster anaesthesia delivery nosecone
No full textSource files for 3D printed hamster anaesthesia delivery nosecone
A systematic review of behaviour change interventions to improve maternal health outcomes in sub-Saharan Africa: Framework analysis and coding
No full textFramework analysis and coding for: "A systematic review of behaviour change interventions to improve maternal health outcomes in sub-Saharan Africa"
Puerto Rico Insecticide Resistance Amplicons
No full textPuerto Rico Insecticide Resistance Amplicons - from regions across Puerto Rico targeting VGSC, RDL, ACE-1 and GSTE2 genes. Project ID: PRJEB72548. Secondary Study Accession: ERP157333. Further information available in the Nature publication, "Profiling insecticide resistance phenotypes and genotypes in Aedes aegypti populations across four regions in Puerto Rico"
Association between HTLV-1/2 infection and COVID-19 severity in a migrant Shipibo-Konibo population in Lima, Peru: Database and dictionary
No full textData and documentation associated with the publication, "Association between HTLV-1/2 infection and COVID-19 severity in a migrant Shipibo-Konibo population in Lima, Peru"
wastewater-informed-covid-forecasting
No full textThis is an archive of the code based to perform the analysis in the paper: "Bayesian generative modeling for heterogeneous wastewater data applied to COVID-19 forecasting"