London School of Hygiene & Tropical Medicine

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    2671 research outputs found

    ruwanepi/Uvira_spatiotemporal

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    This repository contains the code and data to replicate the analyses in the manuscript, 'Spatiotemporal modelling of cholera and implications for its control, Uvira, Democratic Republic of the Congo'

    S1 Raw Data for: "Activation loop phosphorylation and cGMP saturation of PKG regulate egress of malaria parasites"

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    Source data file containing the raw data of graphs and charts not included in S1–S4 Data for: "Activation loop phosphorylation and cGMP saturation of PKG regulate egress of malaria parasites"

    ROBVIS generic dataset

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    ROBVIS generic dataset for: "A systematic review of behaviour change interventions to improve maternal health outcomes in sub-Saharan Africa"

    ParisBap/TTE_ONTARGET

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    Programming code and code lists used for project using the ONTARGET trial to inform design and benchmark findings before extending results to explore treatment heterogeneity by ethnicity using CPRD Aurum-linked data Study applies reference trial emulation methods to (1) emulate the design of and; (2) benchmark findings against an existing RCT (ONTARGET) before extending analysis to explore treatment effect heterogeneity by ethnicity. Explores treatment effects of ARB vs ACEi among an ONTARGET-eligible cohort in CPRD Aurum-linked data. Code lists include product codes used to define exposure of ARB of ACEi. ICD10, OPCS and medcodes used to emulate the inclusion and exclusion criteria from the ONTARGET trial using CPRD-linked data and codes used to define outcomes. Do-files include data management files, analysis files and do-files used to build propensity score models

    APHRC-DSE/INSPIRE-Mental-Health-Project_Landscape_Analysis: R Source code

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    Scoping analysis of longitudinal mental health research for depression, anxiety and psychosis in African settings to investigate availability, accessibility, and quality of secondary mental health data across different African populations

    Dataset for Analysis of ecological drivers of Rattus norvegicus positivity for Leptospira sp. and Seoul Hantavirus

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    Datasets used to analyze the ecological drivers of Rattus norvegicus positivity for Leptospira sp, and Seoul Hantavirus. banco hanta1 is the dataset used for hantavirus positivity GLMs. blepto1 is the dataset used for Leptospira sp. GLMs. The R code used for the analysis is present, but not commented

    typhoidgenomics/genotyphi

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    This repository houses the GenoTyphi genotyping scheme for Salmonella Typhi. It also describes how to call genotypes, AMR and plasmid markers from Typhi whole-genome sequence reads using Mykrobe ('Typhi Mykrobe') and provides links to alternative tools for calling genotypes from reads or assemblies

    Multimorbidity and Knowledge Architectures: An Interdisciplinary Global Health Collaboration (KnowM): Qualitative Dataset, Zimbabwe (2021-2024)

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    KnowM (2021-2024) was an interdisciplinary research collaboration to characterize the meaning, significance, and transformative potential of the concept of multimorbidity within a global health context, centred on a case study of Zimbabwe. It brought together stakeholders from across the Zimbabwe health system to critically interrogate the concept of multimorbidity and co-produce a formative agenda for responding to it in this setting. Data includes the health facility health facility survey (n=30 surveys), in-depth interviews (n=45 transcripts), and fieldnote summaries from participant-observation and other stakeholder engagements during the study (n=23 fieldnote summaries)

    Data & code for SanQoL-5 discrete choice experiment in Mozambique

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    Replication package for "Valuing an Index of Sanitation Related Quality of Life in urban Mozambique – a Discrete Choice Experiment". This package contains: (1) dce_regression.dta - dataset structured for DCE analysis in Stata format, (2) dce_regression.csv - as #1 but in csv, (3) non-dce_analysis.dta - dataset structured for descriptives analysis in Stata format, (4) non-dce_analysis.csv - as #3 but in csv, (5) dce_replication.do - Stata code to produce the results, and (6) SanQoL_DCE_Maputo_FINAL.xlsx - questionnaire in ODK style (cannot be csv as multiple sheets)

    sophiemoss/anopheles_popgen

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    Python code for Anopheles melas population genomic analysis

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