1,720,971 research outputs found
tferr/hIPNAT: hIPNAT 1.0.7
No full text<p>Most relevant changes:</p>
<ul>
<li>Extended <a href="https://github.com/tferr/hIPNAT/blob/master/src/main/java/ipnat/ImportTracings.java">File>Import>Tracings (Traces/(e)SWC)...</a> to allow converting tracings to ImageJ ROIs and tagged skeletons</li>
<li>Added several scripts to <a href="https://github.com/tferr/hIPNAT/tree/master/src/main/resources/scripts/Plugins/NeuroAnatomy">Plugins>NeuroAnatomy></a> exemplifying how to access and render remote files </li>
</ul>
<p>Uploaded to the Neuroanatomy update site on 2017.02.24</p>
tferr/ASA: Sholl Analysis 3.6.9
No full text<p><a href="https://github.com/tferr/ASA/blob/master/Notes.md#version-369-october-2016">Release notes</a>
<a href="https://zenodo.org/badge/latestdoi/4622/tferr/ASA"></a></p>
tferr/Scripts: BAR 1.1.9
No full text<ul>
<li>Script for <a href="https://github.com/tferr/Scripts/blob/master/BAR/src/main/resources/scripts/BAR/Data_Analysis/README.md#interactive-plotting">interactive plotting</a> is now a much more powerful and responsive <a href="https://github.com/tferr/Scripts/blob/master/BAR/src/main/java/bar/plugin/InteractivePlotter.java">Java plugin</a></li>
<li><a href="https://github.com/tferr/Scripts/tree/master/BAR/src/main/resources/scripts/BAR/Data_Analysis">Data Analysis</a> routines can retrieve tables from PlotWindows</li>
<li>Started taking advantage of SciJava discovering scripts <a href="https://github.com/tferr/Scripts/issues/17">within JAR files</a> (Right now just <em>Data Analysis</em> scripts, other directories will follow)</li>
<li>Several scripts were simplified through the usage of <a href="http://imagej.net/Script_parameters">script parameters</a></li>
<li>New routine: <a href="https://github.com/tferr/Scripts/blob/master/Analysis/LoG-DoG_Spot_Counter.py">LoG_Spot_Counter.py</a></li>
<li>New routine: <a href="https://github.com/tferr/Scripts/blob/master/BAR/src/main/resources/scripts/BAR/Data_Analysis/README.md#create-polar-plot">Create_Polar_Plot</a></li>
<li>Improvements in <a href="https://github.com/tferr/Scripts/blob/master/BAR/src/main/resources/scripts/BAR/Data_Analysis/README.md#create-boxplot">Create BoxPlot</a>, <a href="https://github.com/tferr/Scripts/blob/master/BAR/src/main/resources/scripts/BAR/Data_Analysis/README.md#distribution-plotter">Distribution Plotter</a>, <a href="https://github.com/tferr/Scripts/blob/master/Annotation/README.md#roi-color-coder">ROI Color Coder</a>, and <a href="https://github.com/tferr/Scripts/blob/master/Segmentation/README.md#wipe-background">Wipe Background</a></li>
<li>Non-Fiji installations are no longer supported and Java 8 is now required</li>
</ul>
Scripts: BAR 1.1.7
No full text<p>Additions:</p>
<ul>
<li>Thanks to Mark Hiner, the first <a href="http://imagej.net/Adding_new_ops">BAR Op</a>!</li>
<li>New snippets: <a href="https://github.com/tferr/Scripts/blob/master/Snippets/README.md#extract-bouts-from-tracks">Extract_Bouts_From_Tracks.py</a> and <a href="https://github.com/tferr/Scripts/blob/master/Snippets/README.md#list-bars">List_BARs.groovy</a> </li>
</ul>
<p>Improvements:</p>
<ul>
<li>
<a href="/Data_Analysis/README.md#data-analysis">Data Analysis</a> routines got smarter: In addition to the <em>Results</em> table, BAR scripts can now import data from other sources, including the clipboard, external files (.csv/.txt), or <em>ANY</em> ImageJ table.</li>
<li>
<em>Plot Results</em>, now <a href="https://github.com/tferr/Scripts/tree/master/Data_Analysis#plot-xy-data">Plot XY Data</a>, is now fully interactive due to new API</li>
<li>
<a href="https://github.com/tferr/Scripts/tree/master/Analysis#multichannel-plot-profile">Multi-channel_ZT profile</a>: Add support for StdDev statistics (thanks to Nicolas Vanderesse)</li>
<li>
<a href="https://github.com/tferr/Scripts/tree/master/Analysis#multichannel-zt-axis-profile">Multichannel ZT-axis Profile</a>: It is now possible to trigger custom routines in <em>Live Mode</em>.</li>
</ul>
<p>Bug fixes:</p>
<ul>
<li>
<a href="https://github.com/tferr/Scripts/tree/master/Data_Analysis#distribution-plotter">Distribution plotter</a>: Fix exception when ignoring zero data points.</li>
</ul>
<p>Changes:</p>
<ul>
<li>Plot Results as been renamed to <a href="https://github.com/tferr/Scripts/tree/master/Data_Analysis#plot-xy-data">Plot XY Data</a>
</li>
<li>The <em>Strahler Analysis</em> script has been converted into a java plugin, now part of the <a href="https://github.com/tferr/hIPNAT">hIPNAT repository</a>
</li>
<li>The now deprecated <a href="https://github.com/tferr/Scripts/tree/master/misc#clipboard-to-results">Clipboard_to_Results.py</a> is no longer listed in the BAR> menu hierarchy</li>
</ul>
<p>Documentation:</p>
<ul>
<li>Updated <a href="http://tferr.github.io/Scripts/apidocs/">API</a>, <a href="https://github.com/tferr/Scripts/#ij-bar">Markdown</a>, and <a href="http://imagej.net/BAR">User</a> documentation</li>
</ul>
ASA: Sholl Analysis 3.6.2
No full text<p><a href="https://github.com/tferr/ASA/blob/master/Notes.md#version-362-may-2016">Release notes</a>
<a href="https://zenodo.org/badge/latestdoi/4622/tferr/ASA"></a></p>
ASA: Sholl Analysis 3.4.5
No full text<p><a href="https://github.com/tferr/ASA/blob/master/Notes.md#version-345-june-2015">Release notes</a></p>
tferr/Scripts: BAR 1.5.1
No full text<p>This is the largest update so far. Highlights:</p>
<ul>
<li>Several IJ1 plugins rewritten as IJ2 Scijava commands</li>
<li>All core files are now distributed inside a single jar, and are no longer spread across the ImageJ directory</li>
<li>Offline help displays the README.md files displayed by GitHub when browsing directories in the repository </li>
<li>Several routines for time series analysis (such as calcium imaging experiments)</li>
<li>Several scripts are now installed in the Script Editor <em>Templates</em> menu </li>
<li>User scripts are now placed in a more convenient location: the <code>/scripts/BAR/</code> directory in ImageJ root directory (rather than the convoluted <code>/plugins/scripts/BAR/(...)</code> location</li>
<li><em>My Routines</em> supersedes <em>My Snippets</em></li>
<li>BAR is now more diverse with code written in more languages e.g., Clojure and Groovy</li>
<li>Support for multichannel profiles for images with more than 7 channels</li>
</ul>
<p>[Uploaded to the BAR update site on 2017.04.05]</p>
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