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    RADE (Recovery through Art, Drama, & Education) 2005-2009 events.

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      Details of RADE events from 2005 to 2009
      National Documentation Centre on Drug Use

      AAROC/CODE-RADE-container: DevOps for CODE-RADE - Build Container role

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      &lt;p&gt;CODE-RADE Build Container&lt;/p&gt; &lt;p&gt;A somewhat OS-independent role to build CODE-RADE slaves for use in a continuous integration environment, using Ansible-Container.&lt;/p&gt; &lt;p&gt;Adds a CODE-RADE build container service to your Ansible Container project. To be used in conjunction with CODE-RADE Build Containers. For galaxy info, see meta/main.yml&lt;/p&gt; &lt;p&gt;Run the following commands to install the service:&lt;/p&gt; &lt;p&gt;# Set the working directory to your Ansible Container project root cd myproject # Install the service ansible-container install AAROC.code-rade-build-containers Requirements&lt;/p&gt; &lt;ul&gt; &lt;li&gt;Ansible Container&lt;/li&gt; &lt;li&gt; &lt;p&gt;An existing Ansible Container project. To create a project, simply run the following:&lt;/p&gt; # Create an empty project directory&lt;br&gt; mkdir myproject<br> # Set the working directory to the new directory<br> cd myproject&lt;br&gt; # Initialize the project&lt;br&gt; $ ansible-contiainer init&lt;/li&gt; &lt;/ul&gt; &lt;p&gt;Role Variables&lt;/p&gt; &lt;p&gt;Variables are all in vars/main.yml :&lt;/p&gt; &lt;ul&gt; &lt;li&gt;modules_path - The OS-dependent path where environment-modules keeps its base configuration by default.&lt;/li&gt; &lt;li&gt;modules - CODE-RADE specific modulefiles ci and deploy which set up the build, test and deploy shells. These contain OS-specific variables, using anisble_os_family&lt;/li&gt; &lt;li&gt;module_domains - The domain-specific modulefile paths to which CODE-RADE can write application modulefiles. Contain : &lt;ul&gt; &lt;li&gt;astronomy&lt;/li&gt; &lt;li&gt;bioinformatics&lt;/li&gt; &lt;li&gt;compilers&lt;/li&gt; &lt;li&gt;languages&lt;/li&gt; &lt;li&gt;libraries&lt;/li&gt; &lt;li&gt;physical_sciences&lt;/li&gt; &lt;li&gt;hep&lt;/li&gt; &lt;li&gt;prerequisites: OS-specific dependencies that need to be in the build environment in order to execute compilation and tests. Intentionally kept small.&lt;/li&gt; &lt;/ul&gt; &lt;/li&gt; &lt;/ul&gt; &lt;p&gt;Dependencies&lt;/p&gt; &lt;p&gt;None&lt;/p&gt; &lt;p&gt;License&lt;/p&gt; &lt;p&gt;Apache-2.0&lt;/p&gt; &lt;p&gt;Author Information&lt;/p&gt; &lt;p&gt;Bruce Becker | [email protected] | C.S.I.R. Meraka Institute Africa-Arabia Regional Operations Centre&lt;/p&gt; &lt;p&gt;Citing&lt;/p&gt; &lt;p&gt;&lt;br&gt; If you use this role in an academic or research context, please cite :&lt;br&gt; Bruce Becker. (2017). AAROC/CODE-RADE-container: DevOps for CODE-RADE - Build Container role [Data set]. Zenodo. http://doi.org/10.5281/zenodo.572278&lt;br&gt;  &lt;/p&gt
      ZENODO

      CODE-RADE: Fermionic Molecular Dynamics Release

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      &lt;p&gt;We have added &lt;a href="https://github.com/SouthAfricaDigitalScience/FMD-codes-from-T.-Neff-/releases/tag/0.0.1"&gt;FMD/0.1&lt;/a&gt; to the CODE-RADE fastrepo. &lt;/p&gt; &lt;p&gt;To use it : module add FMD&lt;/p&gt; &lt;p&gt;Thanks to @KRHenninger&lt;/p&gt
      ZENODO

      Remonstrantie oft vertooch in maniere van beclach aen mijne Heeren, de gedeputeerde vande generale Staten, ende vanden gheunieerden Prouincien, by den inwoonderen ende ghemeynte der Stadt van Antwerpen, met aduijs om te voorsiene tot de quade orden van desen lande : Metgaders een requeste ghepresenteert aen mijn Heere den Prince van Oraignen [...] dat het inhoudt vande voorseyde remonstrancie promptelijck ten effecte ende ter executie ghebracht soude moghen worden. En[de] bouen desen een waerschouwinghe tot den leser.

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      Ex. meul.427 gboven het jaar van uitgave: t'Antwerpen : by Gielis vande Rade. Het zetsel van beide exemplaren is hetzelfdeVerpakt met de steun van Fonds Inbev-Latour (2010-2012)Herkomst: vignet Bibliotheque Theodore de Jonghe onder Vignet Isaac MeulmanCockx-Indestege, E. Belgica typographica ; 4126Machiels, J. Catalogus van de boeken gedrukt vóór 1600 ; A 423Van der Wulp, J.K. Tractaten, pamfletten enz. ; 428Europeana-GoogleBook
      Archivsystem Ask23

      Remonstrance en forme de complaincte, et doleance a Messievrs les depvtez des Estats generavx, et des prouinces vnies, par les habitans & commune de la ville d'Anuers, avecq aduis pour remedier au desordre du pays. Ensemble vne requeste presentée à Monsieur le Prince d'Oranges [...] tendante à ce que le contenu de ladicte remonstrance soit promptement mis en effect & execution [...].

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      Er is ook een andere uitgave (Meul.426) met boven het jaar van uitgave: t'Antwerpen : En Anuers : chez Giles vanden Rade. Het zetsel van beide exemplaren is hetzelfdeVerpakt met de steun van Fonds Inbev-Latour (2010-2012)Cockx-Indestege, E. Belgica typographica 4128Machiels, J. Catalogus van de boeken gedrukt vóór 1600 ; A 422Tiele, P. A. Bibliotheek van Nederlandsche pamfletten. Verzameling Frederik Muller ; 202Europeana-GoogleBooksEuropeana-pamfletHerkomst: Vignet Isaac Meulma
      Archivsystem Ask23

      SouthAfricaDigitalScience/sqlite-deploy: CODE-RADE Foundation Release 3 - sqlite

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      &lt;p&gt; &lt;/p&gt; &lt;p&gt;sqlite-deploy&lt;/p&gt; &lt;p&gt;Build, test and deploy scripts for SQLite, for CODE-RADE&lt;/p&gt; &lt;p&gt;Dependencies&lt;/p&gt; &lt;ul&gt; &lt;li&gt;readline&lt;/li&gt; &lt;li&gt;Tcl/Tk&lt;/li&gt; &lt;/ul&gt; &lt;p&gt;Downstream&lt;/p&gt; &lt;p&gt;Several CODE-RADE applications are configured to link against SQlite, notably Python and ROOT.&lt;/p&gt; &lt;p&gt;Versions&lt;/p&gt; &lt;p&gt;Versions built by CODE-RADE :&lt;/p&gt; &lt;ol&gt; &lt;li&gt;3.9.2&lt;/li&gt; &lt;li&gt;3.16.2&lt;/li&gt; &lt;li&gt;3.18.00&lt;/li&gt; &lt;/ol&gt; &lt;p&gt;At present, only the 3.9.2 release is compiled, due to the strange source directory structure of sqlite.&lt;/p&gt; &lt;p&gt;Citing&lt;/p&gt
      ZENODO

      SouthAfricaDigitalScience/tcltk-deploy: CODE-RADE Foundation Release 3 - Tcl/Tk

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      &lt;p&gt;Build, test and deploy scripts for Tcl/Tk from CODE-RADE&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dependencies&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;This project has no dependencies&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Versions&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Versions built are:&lt;/p&gt; &lt;ol&gt; &lt;li&gt;8.6.6&lt;/li&gt; &lt;/ol&gt; &lt;p&gt;&lt;strong&gt;Configuration&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;It seems there is no easy way to turn off building against X, so what the hell, we keep that in the standard location.&lt;/p&gt; &lt;p&gt;The builds are configured with :&lt;/p&gt; &lt;p&gt;&lt;strong&gt;TK configuration&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;--enable-64bit \ --enable-shared \ --enable-threads&lt;/p&gt; &lt;p&gt;&lt;strong&gt;TCL configuration&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;--with-tcl=WORKSPACE/tcl{WORKSPACE}/tcl{VERSION}/unix/build-${BUILD_NUMBER} \ --enable-threads \ --enable-shared \ --enable-64bit \ --enable-xft &lt;/p&gt; &lt;p&gt; &lt;/p&gt; &lt;p&gt;&lt;strong&gt;Cite as &lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Bruce Becker. (2017). SouthAfricaDigitalScience/tcltk-deploy: CODE-RADE Foundation Release 3 - Tcl/Tk [Data set]. Zenodo. http://doi.org/10.5281/zenodo.571827&lt;/p&gt
      ZENODO

      SouthAfricaDigitalScience/autodock-deploy: AutoDock4 for CODE-RADE

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      &lt;p&gt;&nbsp;&lt;/p&gt; &lt;p&gt;Autodock Suite&lt;/p&gt; &lt;p&gt;This repository contains the build and test scripts for the Autodock and Autogrid tools. This project builds autodock4, &lt;strong&gt;not autodock vina&lt;/strong&gt;. The products are pushed to the CODE-RADE application repository in CVMFS. See &lt;a href="https://github.com/AAROC/CODE-RADE"&gt;github.com/AAROC/CODE-RADE&lt;/a&gt; for more information on the repository itself.&lt;/p&gt; &lt;p&gt;Versions&lt;/p&gt; &lt;p&gt;We build versions :&lt;/p&gt; &lt;ul&gt; &lt;li&gt;4.2.6&lt;/li&gt; &lt;/ul&gt; &lt;p&gt;Dependencies&lt;/p&gt; &lt;p&gt;Autodock suite is compiled with a range of GCC versions :&lt;/p&gt; &lt;ul&gt; &lt;li&gt;GCC &lt;ul&gt; &lt;li&gt;4.9.4&lt;/li&gt; &lt;li&gt;5.4.0&lt;/li&gt; &lt;li&gt;6.3.0&lt;/li&gt; &lt;/ul&gt; &lt;/li&gt; &lt;/ul&gt; &lt;p&gt;Using&lt;/p&gt; &lt;p&gt;Autodock is placed in the &lt;code&gt;chemistry&lt;/code&gt; catalogue. Put the application in your shell using the modulefile, &lt;em&gt;e.g.&lt;/em&gt;&lt;/p&gt; &lt;pre&gt;&lt;code&gt;module add autotodocksuite/4.2.6-gcc-6.3.0 &lt;/code&gt;&lt;/pre&gt; &lt;p&gt;Citing References&lt;/p&gt; &lt;ol&gt; &lt;li&gt;Morris GM, Huey R, Lindstrom W, et al. AutoDock4 and AutoDockTools4: Automated Docking with Selective Receptor Flexibility. Journal of computational chemistry. 2009;30(16):2785-2791. doi:10.1002/jcc.21256.&lt;/li&gt; &lt;/ol&gt
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      Development of a total Lagrangian SPH code for the simulation of solids under dynamioc loading

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      This thesis makes use of an alternative SPH formulation, the Total Lagrangianf ormulation, to characterised ynamic eventsi n solids and to achieve the proposed objectives outlined in Chapter 1. The structure is as follows: Chapter 1, Introduction, describes the motivation for this research and outlines the objectives and the structure of this thesis. Chapter 2, SPH fundamentals, supplies the standard procedure to generate particle equations and provides a comprehensive summary of gradient approximation formulae in SPH. The discretised SPH form of the conservation laws is included here. Chapter 3, SPH drawbacks: describes the limitations of SPH such as particle deficiency, consistency, zero energy modes, treatment of boundaries and the tensile instability problem. A rigorous stability analysis of continua and SPH particle equations is also presented in this chapter. Chapter 4, Total Lagrangian SPH. Continuum Mechanics considerations are discussed here; detailed derivations of SPH equations in a total Lagrangian framework are given together with potential corrections to the total Lagrangian SPH equations. Chapter 5, Total Lagrangian SPH algorithms and their implementation using FORTRAN. This chapter gives a brief introduction to explicit codes. It also provides flow charts describing the Total Lagrangian algorithms and their integration into the MCM code. Chapter 6, Total Lagrangian SPH code validation. This chapter includes problems of varying degrees of complexity. Examples are provided to illustrate how the Total Lagrangian SPH code compares to a conventional collocational SPH code. Cases are supplied for which the analytical solution is known, and the results compared with the SPH approximations in order to show the accuracy of the approximation. Some examples are supplied which provide a direct comparison between SPH and non linear FE results and SPH and experimental results. Chapter 7, Alternative formulation of SPH equations and improvements to the standard MCM code: Various modifications to the standard SPH code are presented. These modifications include the implementation of subroutines that make use of an alternative approach to ensure the conservation of mass law is met locally at every particle. The introduction of XSPH to achieve further stabilisation of the code was also carried out and some examples are provided. The theory behind an alternative form of the conservation of mass equation as proposed by Belytschko [4] is explained and its implementation into the SPH code is assessed through examples. Also, an alternative formulation of SPH equations based on the general theory of mixed Lagrangian-Eulerian formulations [35] is presented: these equations could serve as the foundation for future research in this field. Chapter 8, Conclusions are presented in this chapter. A brief literature review is provided at the beginning of each chapter as a means of introduction to the topic and a concise summary outlines the main points discussed
      CERES Research Repository (Cranfield Univ.)

      SouthAfricaDigitalScience/gcc-deploy: CODE-RADE Foundation Release 3 - GCC

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      &lt;p&gt; &lt;/p&gt; &lt;p&gt;GCC-deploy&lt;/p&gt; &lt;p&gt;This is the repository for build, test and deploy scripts for the GNU Compiler Collection (GCC) for CODE-RADE&lt;/p&gt; &lt;p&gt;Versions&lt;/p&gt; &lt;p&gt;We build the latest stable version of each major release of the compiler chain :&lt;/p&gt; &lt;p&gt;Current versions :&lt;/p&gt; &lt;ol&gt; &lt;li&gt;4.9.4&lt;/li&gt; &lt;li&gt;5.4.0&lt;/li&gt; &lt;li&gt;6.3.0&lt;/li&gt; &lt;/ol&gt; &lt;p&gt;Old versions&lt;/p&gt; &lt;p&gt;There are also a few old modules from previous releases. YMMV.&lt;/p&gt; &lt;ol&gt; &lt;li&gt;4.9.2&lt;/li&gt; &lt;li&gt;5.1.0&lt;/li&gt; &lt;li&gt;5.2.0&lt;/li&gt; &lt;li&gt;5.3.0&lt;/li&gt; &lt;li&gt;6.1.0&lt;/li&gt; &lt;/ol&gt; &lt;p&gt;Version 7.x is not built yet, due to support for java being removed.&lt;/p&gt; &lt;p&gt;Downstream products&lt;/p&gt; &lt;p&gt;Almost all CODE-RADE applications in research domains (astronomy, biology, chemistry, &lt;em&gt;etc&lt;/em&gt;) are built with one or more of these compilers. As such, the modulefiles usually set a GCC_VERSION variable which is used to resolve the relevant version of the application. This is set in the gcc modulefile, such that module add gcc/6.4.0 would set GCC_VERSION=6.4.0&lt;/p&gt; &lt;p&gt;Using&lt;/p&gt; &lt;p&gt;Choose a compiler version, and do&lt;/p&gt; &lt;p&gt;module add gcc/&lt;version&gt;&lt;/p&gt; &lt;p&gt;&lt;em&gt;e.g.&lt;/em&gt; :&lt;/p&gt; &lt;p&gt;module add gcc/6.3.0 Citing&lt;/p&gt; &lt;p&gt;If you use this compiler in your toolchain, please cite :&lt;/p&gt; &lt;p&gt;Bruce Becker, &amp; Sakhile Masoka. (2017). SouthAfricaDigitalScience/gcc-deploy: CODE-RADE Foundation Release 3 - GCC [Data set]. Zenodo. http://doi.org/10.5281/zenodo.572588&lt;br&gt;  &lt;/p&gt
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