6,761 research outputs found
sj-pdf-1-imj-10.1177_10815589231167359 – Supplemental material for Development and validation of a scoring system incorporating tumor growth pattern and perineural invasion for risk stratification in colorectal cancer
No full textSupplemental material, sj-pdf-1-imj-10.1177_10815589231167359 for Development and validation of a scoring system incorporating tumor growth pattern and perineural invasion for risk stratification in colorectal cancer by Yulin Liu, Yiting Wang, Su Yao, Changhong Liang, Qian Li, Zaiyi Liu, Yaxi Zhu, Yanfen Cui and Ke Zhao in Journal of Investigative Medicine</p
Native p-type transparent conductive CuI via intrinsic defects
No full textThe ability of CuI to be doped p-type via the introduction of native defects has been investigated using first-principles pseudopotential calculations based on density functional theory. The Cu vacancy has a lower formation energy than any of the other native defects, which include I vacancy (V(I)), Cu interstitial (Cu(i)), I interstitial (I(i)), Cu antisite (Cu(I)), and I antisite (I(Cu)). Combined with its shallow acceptor level, it offers sufficient hole concentrations in CuI. The natural band alignments as compared to zinc-blende ZnS, ZnSe, and ZnTe have also been calculated in order to further identify the p-type dopability of CuI. It is found that CuI has a relatively high valence band maximum and conduction band minimum, which also makes it easy to dope CuI p-type in terms of the doping limit rule. In addition, the small effective mass of the light hole-about 0.303m(0)-can provide high mobility and p-type conductivity in CuI. All of these results make CuI an ideal candidate for native p-type materials (C) 2011 American Institute of Physics. [doi:10.1063/1.3633220
Transcriptomic analysis of Synechocystis sp PCC6803 under low-temperature stress
No full textIn this study, cDNA microarrays were developed from 3569 mRNA reads to analyze the expression profiles of the transcriptomes of Synechocystis sp. PCC6803 under low temperature (LT) stress. Among the genes on the cDNA microarrays, 899 LT-affected genes exhibited a 1.5-fold (or greater) difference in expression compared with the genes from normal unstressed Synechocystis sp. PCC6803. Of the differentially expressed genes, 353 were up-regulated and 246 were down-regulated. The results showed that genes involved in photosynthesis were activated at LT (10A degrees C), including genes for photosystem I, photosystem II, photosynthetic electron transport, and cytochrome b6/f complex. Moreover, desB, one of four genes that encode the fatty acid desaturases, was also induced by LT. However, the LT conditions to some degree enhanced the transcription of some genes. In addition, LT (10A degrees C) may reduce cellular motility by regulating the transcription of spkA (sll1575), a serine/threonine protein kinase. The results reported in this study may contribute to a better understanding of the responses of the Synechocystis cell to LT, including pathways involved in photosynthesis and repair.In this study, cDNA microarrays were developed from 3569 mRNA reads to analyze the expression profiles of the transcriptomes of Synechocystis sp. PCC6803 under low temperature (LT) stress. Among the genes on the cDNA microarrays, 899 LT-affected genes exhibited a 1.5-fold (or greater) difference in expression compared with the genes from normal unstressed Synechocystis sp. PCC6803. Of the differentially expressed genes, 353 were up-regulated and 246 were down-regulated. The results showed that genes involved in photosynthesis were activated at LT (10A degrees C), including genes for photosystem I, photosystem II, photosynthetic electron transport, and cytochrome b6/f complex. Moreover, desB, one of four genes that encode the fatty acid desaturases, was also induced by LT. However, the LT conditions to some degree enhanced the transcription of some genes. In addition, LT (10A degrees C) may reduce cellular motility by regulating the transcription of spkA (sll1575), a serine/threonine protein kinase. The results reported in this study may contribute to a better understanding of the responses of the Synechocystis cell to LT, including pathways involved in photosynthesis and repair
Cloning and characterization of a novel diacylglycerol acyltransferase from the diatom Phaeodactylum tricornutum
No full textIn this study, a cDNA encoding a novel acyl-CoA:diacylglycerol acyltransferase (DGAT)-like protein is identified and isolated from the diatom microalga Phaeodactylum tricornutum (PtDGAT3). Analysis of the sequence reveals that ptDGAT3 cDNA encodes a protein of 504 amino acids with a molecular mass of 64.5 KDa. The putative ptDGAT3 protein has two catalytic domains: a wax ester synthase-like acyl-CoA acyltransferase domain and a bacteria-specific acyltransferase domain, which shows higher similarity to the DGAT3 of Acinetobacter calcoaceticus than reported DGAT1 or DGAT2 from high plants or algae. Its activity was confirmed by heterologous expression of PtDGAT3 in a neutral lipid-deficient quadruple mutant yeast Saccharomyces cerevisiae H1246. The recombinant yeast restored the formation of a lipid body and displayed a preference to the incorporation of unsaturated C-18 fatty acids into triacyglycerol (TAG). This is the first characterized algal DGAT3 gene, giving further evidence to the occurrence of a DGAT3-mediated TAG biosynthesis pathway
Youthhood
No full textTESTING-GROUND issue 03, Youthhood, examines worlds through youthful eyes, makes evident young ambitions, and questions how we can better empower young people to design cities, landscapes, and a planet that works for them. The issue includes contributions from: Carmel Keren, Jude Daniel Smith, Claire Edwards, Kazeem Kuteyi, Emmanuel Adarkwah, Reza Nik, Dan Cui, Kristofer Cullum-Fernandez, Fida Sassi, Simeon Shtebunaev, Daze Aghaji, Averill Dimabuyu, Sarri Elfaitouri, Rebecca McDonald-Balfour, and Ed Wall.
Rebecca McDonald-Balfour (Author), Jude Daniel Smith (Author), Daze Aghaji (Author), Carmel Keran (Author), Alexis Liu (Author), Dan Cui (Author), Kristofer Cullum-Fernandez (Author), Fida Sassi (Author), Averill Dimabuyu (Author), Ed
Characteristics of the Soil and Vegetation along the Yulin–Jingbian Desert Expressway in China
No full textTransportation infrastructure dramatically affects ecological processes. However, the environmental assessment process does not often consider how transportation impacts biodiversity, especially in ecologically fragile areas. The aim of this study was to assess the impacts of the Yulin–Jingbian expressway on vegetative diversity and to discuss the reason for the differences in soil-moisture distribution and vegetation diversity along the expressway. Samples were collected from 60 quadrats, along 6 transects. The α diversity indices and soil-moisture content calculated for each layer were used to represent habitat heterogeneity within a quadrat. A total of 49 species representing 39 genera and 16 families were recorded. Perennial herbs (42.9%) and annual herbs (36.7%) were the dominant life form. Species richness, diversity, and evenness indices of the vegetation varied with the distance between sampling points along the expressway. The vegetation with high diversity and evenness were near the expressway and areas with low diversity were farther from the expressway. The soil-moisture content in the 0–20 cm soil layer was a driving factor for the α diversity indices, and soil-moisture content below 20 cm played an inhibitory role on the α diversity indices. The greatest impact of the expressway on vegetation diversity was its effect on surface runoff and the distribution of plant root systems in the top layer of soil
Chloroplast Transformation of Platymonas (Tetraselmis) subcordiformis with the bar Gene as Selectable Marker
No full textThe objective of this research was to establish a chloroplast transformation technique for Platymonas (Tetraselmis) subcordiformis. Employing the gfp gene as a reporter and the bar gene as a selectable marker, transformation vectors of P. subcordiformis chloroplast were constructed with endogenous fragments rrn16S-trnl (left) and trnA-rrn23S (right) as a recombination site of the chloroplast genome. The plasmids were transferred into P. subcordiformis via particle bombardment. Confocal laser scanning microscopy indicated that the green fluorescence protein was localized in the chloroplast of P. subcordiformis, confirming the activity of the Chlamydomonas reinhardtii promoter. Cells transformed with the bar gene were selected using the herbicide Basta. Resistant colonies were analyzed by PCR and Southern blotting, and the results indicated that the bar gene was successfully integrated into the chloroplast genome via homologous recombination. The technique will improve genetic engineering of this alga
Molecular analysis of green-tide-forming macroalgae in the Yellow Sea
No full textIn the summer of 2008, free-floating green algae bloomed in the Yellow Sea. Samples were collected in a wide area (119 degrees 32'-122 degrees 00'E, 32 degrees 25'-36 degrees 49'N). We calculated the sequence divergences of nuclear ITS, chloroplast rbcL, and psbA data of free-floating samples collected from the Yellow Sea and Ulvaceae from Europe and Japan. In the ITS sequence, 19 out of the 21 Yellow Sea samples of 2008 were identical to those of a sample taken at Qingdao in 2007. A low divergence (0.2%) was found in remaining two samples. Similar evidence was shown by pairwise distances of rbcL and psbA gene sequence data, implying the uniformity of the Yellow Sea blooms in 2007 and 2008. The ITS sequence of the Yellow Sea samples differed 8.1-10.8% from free-floating Enteromorpha or Ulva reported worldwide. ITS-based molecular phylogenetic results and rbcL sequence data grouped the free-floating alga in the Yellow Sea into one clade with Enteromorpha procera, Enteromorpha linza and Enteromorpha prolifera. Furthermore, both morphological characteristics and ribotype network of the ITS sequences imply that the blooming algae in 2007 and 2008 were E. prolifera. The haplotypes of the Yellow Sea free-floating E. prolifera are closely related to those from the Japanese coast but less to European and American algae. (C) 2010 Elsevier B.V. All rights reserved.In the summer of 2008, free-floating green algae bloomed in the Yellow Sea. Samples were collected in a wide area (119 degrees 32'-122 degrees 00'E, 32 degrees 25'-36 degrees 49'N). We calculated the sequence divergences of nuclear ITS, chloroplast rbcL, and psbA data of free-floating samples collected from the Yellow Sea and Ulvaceae from Europe and Japan. In the ITS sequence, 19 out of the 21 Yellow Sea samples of 2008 were identical to those of a sample taken at Qingdao in 2007. A low divergence (0.2%) was found in remaining two samples. Similar evidence was shown by pairwise distances of rbcL and psbA gene sequence data, implying the uniformity of the Yellow Sea blooms in 2007 and 2008. The ITS sequence of the Yellow Sea samples differed 8.1-10.8% from free-floating Enteromorpha or Ulva reported worldwide. ITS-based molecular phylogenetic results and rbcL sequence data grouped the free-floating alga in the Yellow Sea into one clade with Enteromorpha procera, Enteromorpha linza and Enteromorpha prolifera. Furthermore, both morphological characteristics and ribotype network of the ITS sequences imply that the blooming algae in 2007 and 2008 were E. prolifera. The haplotypes of the Yellow Sea free-floating E. prolifera are closely related to those from the Japanese coast but less to European and American algae. (C) 2010 Elsevier B.V. All rights reserved
Impact damage of composite laminates with high-speed waterjet
No full textRain erosion may cause substantial damage to aircrafts during supersonic flight. Such event is investigated here via high-speed waterjet impact on composite laminates. An experimental setup is developed to produce waterjets with the speed up to 700m/s and a finite element model of the waterjet-composite impact event is established. The consistency of experiment and simulation results validates the adopted numerical methods. The distribution of the water-hammer pressure is non-uniform and the maximum pressure occurs near the contact periphery when the water is about to eject laterally. After a high-speed (300∼560m/s) waterjet impacts a composite laminate, the impacted surface depression is observed, and the typical surface damage presents a central region with no visible surface damage surrounded by a faded “failure ring” with resin removal, matrix cracking and minor fiber fracture. Delamination occurs at the interfaces of adjacent layers with unequal dimensions and longitudinal matrix cracking appears on the back surface. Both the velocity and the diameter of waterjets are crucial factors on CFRP damage extents. Water-hammer pressure, the stagnation pressure and propagation of stress waves are failure mechanisms for most matrix damage in CFRP impacted by waterjets.Green Open Access added to TU Delft Institutional Repository 'You share, we take care!' - Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.Structural Integrity & Composite
Sampling and Reconstruction of Signals on Product Graphs
No full textIn this paper, we consider the problem of subsampling and reconstruction of signals that reside on the vertices of a product graph, such as sensor network time series, genomic signals, or product ratings in a social network. Specifically, we leverage the product structure of the underlying domain and sample nodes from the graph factors. The proposed scheme is particularly useful for processing signals on large-scale product graphs. The sampling sets are designed using a low-complexity greedy algorithm and can be proven to be near-optimal. To illustrate the developed theory, numerical experiments based on real datasets are provided for sampling 3D dynamic point clouds and for active learning in recommender systems.Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.Signal Processing System
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