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Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020
No full textHam, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam, Kim, Seung Bum (2022): Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020. Journal of Species Research 11 (1): 1-9, DOI: 10.12651/JSR.2022.11.1.00
Fig. 2 in Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020
No full textFig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences showing the relationships between the strains isolated in this study and their relatives of the family Streptomycetaceae in the phylum Actinobacteria. Bootstrap values (>50%) are shown at branching points. Filled circles indicate the nodes also recovered in the maximum-likelihood and maximum-parsimony trees, and open circles indicate the nodes also recovered in only one of the trees. Bar, 0.005 substitutions per nucleotide position.Published as part of Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1) on page 5, DOI: 10.12651/JSR.2022.11.1.001, http://zenodo.org/record/812007
Nocardioides plantarum BT
No full textDescription of Nocardioides plantarum BT677 Cells are Gram-stain-positive and rod-shaped. Colonies are circular, convex and light yellow colored after incubation for 3 days on R2A at 25℃. Positive for cytochrome oxidase, and weakly positive for urease, esculin hydrolysis and gelatin hydrolysis; but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase and β-galactosidase. D-Glucose and potassium gluconate are utilized as sole carbon sources; but not L-arabinose, D-mannose, D-mannitol, N -acetyl-glucosamine, D-maltose, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid. Strain BT677 (= NIBRBAC 000506195) was isolated from a soil sample from Jeongseon-gun, Gangwon-do. The GenBank accession number for the 16S rRNA gene sequence of strain BT677 is MT993418.Published as part of Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1) on page 6, DOI: 10.12651/JSR.2022.11.1.001, http://zenodo.org/record/812007
Mycolicibacterium duvalii
No full textDescription of Mycolicibacterium duvalii CAU 1609 Cells are Gram-stain-positive and rod-shaped. Colonies are punctiform, convex, smooth and light yellow colored after incubation for 3-5 days on MA at 30℃. Positive for urease; weakly positive for esculin hydrolysis; but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, gelatin hydrolysis, β-galactosidase and cytochrome oxidase. Malic acid is utilized as a sole carbon source; but not D-glucose, L-arabinose, D-mannose, D-mannitol, N -acetyl-glucosamine, D-maltose, potassium gluconate, capric acid, adipic acid, trisodium citrate and phenylacetic acid. Strain CAU 1609 (= NIBRBAC000506270) was isolated from a sea sediment sample from Goseong-gun, Gangwon-do. The Gen Bank accession number for the 16S rRNA gene sequence of strain CAU 1609 is MW012852.Published as part of Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1) on page 5, DOI: 10.12651/JSR.2022.11.1.001, http://zenodo.org/record/812007
Euzebya rosea
No full textDescription of Euzebya rosea CAU 1611 Cells are Gram-stain-positive and rod-shaped. Colonies are circular, convex, smooth and light coral colored after incubation for 3-5 days on MA at 30℃. Positive for esculin hydrolysis, gelatin hydrolysis, β-galactosidase and cytochrome oxidase; but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase and urease. D-Glucose, L-arabinose, D-mannose, D-mannitol, N -acetyl-glucosamine, D-maltose, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid are not utilized as sole carbon sources. Strain CAU 1611 (= NIBRBAC000506272) was isolated from a sea sediment sample from Goseong-gun, Gangwon-do. The GenBank accession number for the 16S rRNA gene sequence of strain CAU 1611 is MW012 619.Published as part of Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1) on page 2, DOI: 10.12651/JSR.2022.11.1.001, http://zenodo.org/record/812007
Corynebacterium amycolatum
No full textDescription of Corynebacterium amycolatum CAU 1619 Cells are Gram-stain-positive and rod-shaped. Colonies are irregular, flat, wavy and white colored after incubation for 2-3 days on BHI at 37℃. Positive for nitrate reduction and glucose fermentation; weakly positive for esculin hydrolysis; but negative for indole production, arginine dihydrolase, urease, gelatin hydrolysis, β-galactosidase and cytochrome oxidase. D-Glucose, D-mannose, D-mannitol, N -acetyl-glucosamine, D-maltose, potassium gluconate, adipic acid, malic acid, trisodium citrate and phenylacetic acid are utilized as sole carbon sources; but not L-arabinose and capric acid. Strain CAU 1619 (= NIBRBAC 000506277) was isolated from a healthy human urine sample from Seoul. The GenBank accession number for the 16S rRNA gene sequence of strain CAU1619 is MW020 537.Published as part of Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1) on page 2, DOI: 10.12651/JSR.2022.11.1.001, http://zenodo.org/record/812007
Mycolicibacterium hippocampi
No full textDescription of Mycolicibacterium hippocampi CAU 1610 Cells are Gram-stain-positive and rod-shaped. Colonies are punctiform, convex, smooth and yellow colored after incubation for 3-5 days on MA at 30℃. Weakly positive for esculin hydrolysis; but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease, gelatin hydrolysis, β-galactosidase and cytochrome oxidase. D-Glucose, L-arabinose, D-mannose, D-mannitol, potassium gluconate, adipic acid and malic acid are utilized as sole carbon sources; but not N -acetyl-glucosamine, D-maltose, capric acid, trisodium citrate and phenylacetic acid. Strain CAU 1610 (= NIBRBAC0005 06271) was isolated from a sea sediment sample from Goseong-gun, Gangwon-do. The GenBank accession number for the 16S rRNA gene sequence of strain CAU 1610 is MW012620.Published as part of Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1) on page 5, DOI: 10.12651/JSR.2022.11.1.001, http://zenodo.org/record/812007
Streptomyces puniceus Patelski 1951
No full textDescription of <i>Streptomyces puniceus</i> I2-3 <p> Cells are Gram-stain-positive and filamentous. Colonies are filamentous, umbonate and purple to white colored after incubation for 3 days at 30℃. Positive for nitrate reduction, urease, esculin hydrolysis and β-galactosidase; but negative for indole production, glucose fermentation, arginine dihydrolase and gelatin hydrolysis. D-Glucose, D-mannose, D-mannitol, <i>N</i> -acetyl-glucosamine, potassium gluconate and malic acid are utilized as sole carbon sources; but not L-arabinose, D-maltose, capric acid, adipic acid, trisodium citrate and phenylacetic acid. Strain I2-3 (<b>=</b> NIBRBAC000506146) was isolated from awetland sample from Seoul. The GenBank accession number for the 16S rRNA gene sequence of strain I2-3 is MW164952.</p>Published as part of <i>Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1)</i> on page 8, DOI: 10.12651/JSR.2022.11.1.001, <a href="http://zenodo.org/record/8120070">http://zenodo.org/record/8120070</a>
Kribbella karoonensis XY
No full textDescription of Kribbella karoonensis XY6 Cells are Gram-stain-positive and filamentous. Colonies are with irregular edges and white colored after incubation for 3 days at 30℃. Positive for nitrate reduction, esculin hydrolysis and β-galactosidase; but negative for indole production, glucose fermentation, arginine dihydrolase, urease, gelatin hydrolysis and cytochrome oxidase. D-Glucose, D-mannose, D-mannitol, N -acetyl-glucosamine, D-maltose, potassium gluconate, adipic acid and malic acid are utilized as sole carbon sources; but not L-arabinose, capric acid, trisodium citrate and phenylacetic acid. Strain XY6 (= NIBRBAC000506149) was isolated from a wetland sample from Seoul. The GenBank accession number for the 16S rRNA gene sequence of strain XY6 is MW164955.Published as part of Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1) on page 6, DOI: 10.12651/JSR.2022.11.1.001, http://zenodo.org/record/812007
Yinghuangia aomiensis SO
No full textDescription of <i>Yinghuangia aomiensis</i> SO314 <p> Cells are Gram-stain-positive and filamentous. Colonies are circular, umbonate, opaque and white colored after incubation for 5 days on R2A at 25℃. Positive for glucose fermentation, esculin hydrolysis, gelatin hydrolysis and cytochrome oxidase; but negative for nitrate reduction, indole production, arginine dihydrolase, urease and β-galactosidase. D-Glucose, L-arabinose, D-mannose, D-mannitol, <i>N</i> -acetyl-glucosamine, D-maltose, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid are not utilized as sole carbon sources. Strain SO314 (<b>=</b> NIBRBAC000506232) was isolated from a soil sample from Suncheon-si, Jeollanam-do.</p>Published as part of <i>Ham, You Ju, Jeong, Ji Won, Im, Wan-Taek, Kim, Won-Yong, Yoon, Jeong-Hun, Kim, Myung Kyum, Seong, Chi Nam & Kim, Seung Bum, 2022, Report of 21 unrecorded bacterial species in Korea belonging to the phylum Actinobacteria, discovered during the survey in 2020, pp. 1-9 in Journal of Species Research 11 (1)</i> on page 8, DOI: 10.12651/JSR.2022.11.1.001, <a href="http://zenodo.org/record/8120070">http://zenodo.org/record/8120070</a>
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