472 research outputs found
Impact of seawater carbonate chemistry on the calcification of marine bivalves
No full textBivalve calcification, particularly of the early larval stages, is highly sensitive to the change in ocean carbonate chemistry resulting from atmospheric CO2 uptake. Earlier studies suggested that declining seawater [CO32−] and thereby lowered carbonate saturation affect shell production. However, disturbances of physiological processes such as acid-base regulation by adverse seawater pCO2 and pH can affect calcification in a secondary fashion. In order to determine the exact carbonate system component by which growth and calcification are affected it is necessary to utilize more complex carbonate chemistry manipulations. As single factors, pCO2 had no effects and [HCO3-] and pH had only limited effects on shell growth, while lowered [CO32−] strongly impacted calcification. Dissolved inorganic carbon (CT) limiting conditions led to strong reductions in calcification, despite high [CO32−], indicating that [HCO3-] rather than [CO32−] is the inorganic carbon source utilized for calcification by mytilid mussels. However, as the ratio [HCO3-] / [H+] is linearly correlated with [CO32−] it is not possible to differentiate between these under natural seawater conditions. An equivalent of about 80 μmol kg−1 [CO32−] is required to saturate inorganic carbon supply for calcification in bivalves. Below this threshold biomineralization rates rapidly decline. A comparison of literature data available for larvae and juvenile mussels and oysters originating from habitats differing substantially with respect to prevailing carbonate chemistry conditions revealed similar response curves. This suggests that the mechanisms which determine sensitivity of calcification in this group are highly conserved. The higher sensitivity of larval calcification seems to primarily result from the much higher relative calcification rates in early life stages. In order to reveal and understand the mechanisms that limit or facilitate adaptation to future ocean acidification, it is necessary to better understand the physiological processes and their underlying genetics that govern inorganic carbon assimilation for calcification
FicD genes in invertebrates: A tale of transposons, pathogenic and integrated viruses
No full textMany gene families are shared across the tree of life between distantly related species because of horizontal gene transfers (HGTs). However, the frequency of HGTs varies strongly between gene families and biotic realms suggesting differential selection pressures and functional bias. One gene family with a wide distribution are FIC-domain containing enzymes (FicDs). FicDs catalyze AMPylation, a post-translational protein modification consisting in the addition of adenosine monophosphate to accessible residues of target proteins. Beside the well-known conservation of FicDs in deuterostomes, we report the presence of a conserved FicD gene ortholog in a large number of protostomes and microbial eukaryotes. We also reported additional FicD gene copies in the genomes of some rotifers, parasitic worms and bivalves. A few dsDNA viruses of these invertebrates, including White spot syndrome virus, Cherax quadricarinatus iridovirus, Ostreid herpesvirus-1 and the beetle nudivirus, carry copies of FicDs, with phylogenetic analysis suggesting a common origin of these FicD copies and the duplicated FicDs of their invertebrate hosts. HGTs and gene duplications possibly mediated by endogenous viruses or genetic mobile elements seem to have contributed to the transfer of AMPylation ability from bacteria and eukaryotes to pathogenic viruses, where this pathway could have been hijacked to promote viral infection
Viral Decoys: The Only Two Herpesviruses Infecting Invertebrates Evolved Different Transcriptional Strategies to Deflect Post-Transcriptional Editing
No full textThe highly versatile group of Herpesviruses cause disease in a wide range of hosts. In invertebrates, only two herpesviruses are known: the malacoherpesviruses HaHV-1 and OsHV-1 infecting gastropods and bivalves, respectively. To understand viral transcript architecture and diversity we first reconstructed full-length viral genomes of HaHV-1 infecting Haliotis diversicolor supertexta and OsHV-1 infecting Scapharca broughtonii by DNA-seq. We then used RNA-seq over the time-course of experimental infections to establish viral transcriptional dynamics, followed by PacBio long-read sequencing of full-length transcripts to untangle viral transcript architectures at two selected time points. Despite similarities in genome structure, in the number of genes and in the diverse transcriptomic architectures, we measured a ten-fold higher transcript variability in HaHV-1, with more extended antisense gene transcription. Transcriptional dynamics also appeared different, both in timing and expression trends. Both viruses were heavily affected by post-transcriptional modifications performed by ADAR1 affecting sense-antisense gene pairs forming dsRNAs. However, OsHV-1 concentrated these modifications in a few genomic hotspots, whereas HaHV-1 diluted ADAR1 impact by elongated and polycistronic transcripts distributed over its whole genome. These transcriptional strategies might thus provide alternative potential roles for sense-antisense transcription in viral transcriptomes to evade the host’s immune response in different virus–host combinations
Invasive Vaucheria (Xanthophyceae) at the lower shore of the Wadden Sea
No full textVaucheria species have previously been restricted to upper shore habitats in the Wadden Sea (eastern North Sea, European Atlantic). In contrast to these previous observations, we have now found Vaucheria longicaulis and a distinct plastid lineage of V. velutina spreading along the lower shores, forming extensive turfs at and below low tide level under fully marine conditions near the Island of Sylt. Species and populations were identified by morphological features and reconfirmed by sequencing the plastid-encoding gene rbcL and the psbA-rbcL spacer region. We needed to modify primer sequences to successfully amplify the rbcL region of marine and brackish Vaucheria species. Due to distinct phylogenetic grouping, we can reject the possibility of niche expansions from the upper shore and propose recent introductions as the cause of the newly formed populations at the lower shore
Gasterosteus aculeatus body sizes vs. experiment setup
No full textGasterosteus aculeatus body sizes vs. experiment setup after 90 day
Gasterosteus aculeatus hatching success vs. experiment setup
No full textGasterosteus aculeatus hatching success vs. experiment setu
Hemocyte data of blue mussel Mytilus edulis infected by Mytilicola intestinalis
No full textHemocyte data of blue mussel Mytilus edulis infected by Mytilicola intestinali
Survival data of blue mussel Mytilus edulis infected by Mytilicola intestinalis
No full textSurvival data of blue mussel Mytilus edulis infected by Mytilicola intestinali
Gasterosteus aculeatus egg sizes vs. experiment setup
No full textGasterosteus aculeatus clutch sizes vs. experiment setu
Gasterosteus aculeatus body sizes vs. experiment setup after 60 days
No full textGasterosteus aculeatus body sizes vs. experiment setup after 60 day
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