179 research outputs found
Members of the Tree of Life Core Informatics collective
No full textThis document holds a record of the individuals involved in the core informatics processes who should be considered coauthors of publications arising from the work of the Tree of Life programme (https://www.sanger.ac.uk/programme/tree-of-life/)
The genome sequence of the Large Skipper, Ochlodes sylvanus, (Esper, 1777)
No full text© 2023 Lohse K et al. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.We present a genome assembly from an individual female Ochlodes sylvanus, the Large Skipper (Arthropoda; Insecta; Lepidoptera; Hesperiidae). The genome sequence is 380 megabases in span. Most of the assembly (99.97%) is scaffolded into 30 chromosomal pseudomolecules, including the assembled W and Z sex chromosomes. The mitochondrial genome has also been assembled and is 17.1 kilobases in length. Gene annotation of this assembly on Ensembl identified 13,451 protein coding genes.This work was supported by Wellcome through core funding to the Wellcome Sanger Institute (206194, https://doi.org/10.35802/206194) and the Darwin Tree of Life Discretionary Award (218328, https://doi.org/10.35802/218328). This work was also supported by the ERC (ModelGenom Land 757648); The Natural Environment Research Council (NE/L011522/1); Biotechnology and Biological Sciences Research Council (BBSRC; David Phillips Fellowship (BB/N020146/1)); Ministerio de Ciencia e Innovación and Agencia Estatal de Investigación (MCIN/AEI/10.13039/ 501100011033; PID2019-107078GB-I00).Peer reviewe
The genome sequence of the Celtic sea slug, Onchidella celtica (Audouin & Milne-Edwards, 1832) (Systellommatophora: Onchidiidae)
Get PDFWe present a genome assembly from an individual Onchidella celtica (Celtic sea slug; Mollusca; Gastropoda; Systellommatophora; Onchidiidae). The genome sequence has a total length of 1 141.02 megabases. Most of the assembly (99.92%) is scaffolded into 18 chromosomal pseudomolecules. Gene annotation of this assembly on Ensembl identified 12 582 protein-coding genes. The mitochondrial genome has also been assembled, with a length of 13.99 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland
The genome sequence of the common periwinkle, Littorina littorea (Linnaeus, 1758) (Littorinimorpha: Littorinidae)
Get PDFWe present a genome assembly from an individual Littorina littorea (common periwinkle; Mollusca; Gastropoda; Littorinimorpha; Littorinidae). The assembly contains two haplotypes with total lengths of 849.61 megabases and 847.12 megabases. Most of haplotype 1 (91.03%) is scaffolded into 17 chromosomal pseudomolecules. Haplotype 2 was assembled to scaffold level. The mitochondrial genome has also been assembled, with a length of 16.97 kilobases. This assembly was generated as part of the Darwin Tree of Life project, which produces reference genomes for eukaryotic species found in Britain and Ireland
The genome sequence of the willow beauty, Peribatodes rhomboidaria (Denis & Schiffermüller, 1775)
Get PDFWe present a genome assembly from an individual male Peribatodes rhomboidaria (the Willow Beauty; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 499.7 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 18,486 protein coding genes
The genome sequence of the Blood-vein moth, Timandra comae Schmidt, 1931
Get PDFWe present a genome assembly from an individual male Timandra comae (the Blood-vein; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 334.4 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.91 kilobases in length
The genome sequence of the Mullein moth, Shargacucullia verbasci (Linnaeus, 1758)
Get PDFWe present a genome assembly from an individual female Shargacucullia verbasci (the Mullein moth; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 422.7 megabases in span. Most of the assembly is scaffolded into 32 chromosomal pseudomolecules, including the W and Z sex chromosomes. The mitochondrial genome has also been assembled and is 15.32 kilobases in length
The genome sequence of the tree of heaven, Ailanthus altissima (Mill.) Swingle, 1916.
No full textWe present a genome assembly from an individual (tree of heaven; Streptophyta; Magnoliopsida; Sapindales; Simaroubaceae). The genome sequence is 939 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies are 661.1 kilobases and 161.1 kilobases long, respectively
The genome sequence of the brown china-mark moth, Elophila nymphaeata (Linnaeus, 1758)
Get PDFWe present a genome assembly from an individual female Elophila nymphaeata (the Brown China-mark moth; Arthropoda; Insecta; Lepidoptera; Crambidae). The genome sequence is 734.1 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z and W sex chromosomes. The mitochondrial genome has also been assembled and is 15.3 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,079 protein coding genes
The genome sequence of the Large Nutmeg, Apamea anceps (Denis & Schiffermüller, 1775)
Get PDFWe present a genome assembly from an individual male Apamea anceps (the Large Nutmeg; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 615.8 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 16.43 kilobases in length
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