2,299 research outputs found
Ryan B. Stephens Catalog 2010-2013
No full textCollectors notes and catalogs for Ryan B. Stephens covering collecting activities from 2010-201
Nutritional and environmental factors influence small mammal seed selection in a northern temperate forest
No full textData associated with the manuscript: Moore, N. B., Stephens, R. B., and R. J. Rowe. 2022. Nutritional and environmental factors
influence small mammal seed selection in a northern temperate forest. Ecosphere</i
Exploring sexual dimorphism of the modern human talus through geometric morphometric methods
No full textSex determination is a pivotal step in forensic and bioarchaeological fields. Generally, scholars focus on metric or qualitative morphological features, but in the last few years several contributions have applied geometric-morphometric (GM) techniques to overcome limitations of traditional approaches. In this study, we explore sexual dimorphism in modern human tali from three early 20th century populations (Sassari and Bologna, Italy; New York, USA) at intra- and interspecific population levels using geometric morphometric (GM) methods. Statistical analyses were performed using shape, form, and size variables. Our results do not show significant differences in shape between males and females, either considering the pooled sample or the individual populations. Differences in talar morphology due to sexual dimorphism are mainly related to allometry, i.e. size-related changes of morphological traits. Discriminant function analysis using form space Principal Components and centroid size correctly classify between 87.7% and 97.2% of the individuals. The result is similar using the pooled sample or the individual population, except for a diminished outcome for the New York group (from 73.9% to 78.2%). Finally, a talus from the Bologna sample (not included in the previous analysis) with known sex was selected to run a virtual resection, followed by two digital reconstructions based on the mean shape of both the pooled sample and the Bologna sample, respectively. The reconstructed talus was correctly classified with a Ppost between 99.9% and 100%, demonstrating that GM is a valuable tool to cope with fragmentary tali, which is a common occurrence in forensic and bioarchaeological contexts.</div
Relationship between objective measures of physical activity and weather: a longitudinal study
No full text Background The weather may be a barrier to physical activity but objective assessment of this hypothesis is lacking. Therefore we evaluated the effect of temperature, rain or snow, and wind speed on the daily physical activity of adults. Methods This report contains data from 25 males (BMI (mean ± SD): 28.7 ± 3.83 kg/m2) and 177 females (BMI: 29.2 ± 5.92 kg/m2) enrolled in an intervention to increase physical activity. Steps/day of the participants was measured by pedometer. Weather data were obtained from Environment Canada. A total of 8,125 observations were included in a mixed linear model analysis. Results Significant weather related variables (at the 5% level) impacting steps/day included: seasonal effects related to the interaction between weekday and month; mean temperature, total rainfall, interactions between gender, BMI and total snow, interactions between maximum wind speed and BMI, and the amount of snow on the ground. The estimated magnitudes for the various effects were modest, ranging from ~1% to ~20%. Thus for an average individual taking ~10,000 steps/day, weather-dependent changes in physical activity could reach 2,000 steps/day. Conclusion We conclude that weather had modest effects on physical activity of participants in an intervention to increase their activity. It should be stressed that these effects may be different for less or more motivated people. With this in mind, we suggest that the effect of weather on physical activity in the general population needs to be objectively assessed to better understand the barrier it poses, especially as it relates to outdoor recreation or work activities.</p
Quasi-cyclic Generalized LDPC codes with low error floors
No full textIn this paper, a novel methodology for designing structured generalized LDPC (G-LDPC) codes is presented. The proposed design results in quasi-cyclic G-LDPC codes for which efficient encoding is feasible through shift-register-based circuits. The structure imposed on the bipartite graphs, together with the choice of simple component codes, leads to a class of codes suitable for fast iterative decoding. A pragmatic approach to the construction of G-LDPC codes is proposed. The approach is based on the substitution of check nodes in the protograph of a low-density parity-check code with stronger nodes based, for instance, on Hamming codes. Such a design approach, which we call LDPC code doping, leads to low-rate quasi-cyclic G-LDPC codes with excellent performance in both the error floor and waterfall regions on the additive white Gaussian noise channel
Allene cycloisomerization, epoxidation, and applications in total synthesis
No full textDisclosed are studies on the structure and reactivity of allenes and spirodiepoxides (SDEs) and their application to synthesis. A novel ruthenium promoted cycloisomerization of γ-enallenes to cyclopentenes was discovered. The effects of solvent, oxidant, and substrate structure on the stereoselectivity of SDE formation from 1,3-disubstituted and trisubstituted allenes were evaluated. A computational model was advanced for the rationalization of observed selectivity in such formations. The known acid instability of SDEs was exploited to effect a designed rearrangement of β-silyl SDE to an α-hydroxy enone. Silyl-substituted SDEs were utilized to give carbinol substituted heterocycles with excellent ee, α-hydroxy enones, as well as α,β-dihydroxy olefins. A silyl-SDE approach was used to accomplish a short and efficient total synthesis of the natural product, epi-citreodiol. A de novo synthesis of the anticancer natural product jaspine B was also achieved using a SDE-based approach.Ph. D.Includes bibliographical referencesIncludes vitaby Joseph Ryan Cusic
A Bayesian hierarchical model for risk assessment of methylmercury
No full textThis article uses a Bayesian hierarchical model to quantify the adverse health effects associated with in-utero exposure to methylmercury. By allowing for study-to-study as well as outcome-to-outcome variability, the approach provides a useful meta-analytic tool for multi-outcome, multi-study environmental risk assessments. The analysis presented here expands on the findings of a National Academy of Sciences (NAS) committee, charged with advising the United States Environmental Protection Agency (EPA) on an appropriate approach to conducting a risk assessment for methylmercury. The NAS committee, for which the senior author (Ryan) was a committee member, reviewed the findings from several conflicting studies and reported the results from a Bayesian hierarchical model that synthesized information across several studies and for several outcomes. Although the NAS committee did not suggest that the hierarchical model be used as the actual basis for a methylmercury risk assessment, the results from the model were used to justify and support the final recommendation that the risk analysis be based on data from a study conducted in the Faroe Islands, which had found an association between in-utero exposure to methylmercury and impaired neurological development. We consider a variety of statistical issues, but particularly sensitivity to model specification. © 2003 American Statistical Association and the International Biometric Society
Unravelling morphological changes of the human talus during growth
No full textThe human talus, being located between the lower limb and foot, plays an essential role in distributing the weight of the body during locomotion. One of its most important functions during this process is in allowing for foot movements while efficiently dividing weight between its anterior and posterior portions, where it articulates with the navicular and calcaneus, respectively [1]. As such, the talus plays a pivotal role in the different stages of human locomotion, from crawling, to initial bipedal acquisition, to full striding bipedalism at age 8 [1]. Unfortunately, little is known about the morphological changes of the talus during the first years of life, when infants acquire upright posture and gait maturation.
Using a (semi)landmark based approach we analyse an ontogenetic sample of modern human tali with the aim of exploring the morphological variation of the talus during growth. From this we assess if the variation may then be related to the acquisition and transition to full bipedal locomotion, which might ultimately provide insight into the evolution of hominin bipedalism.
The sample consists of 21 juvenile tali aged between 1.5 years and 11 years: 12 individuals from the Collection of Bologna, Italy (sex and age at death known) [2]; five from the archaeological sample of Roccapelago (Italy) [3]; four from the archaeological sample of Norris Farms #36 (Illinois, USA). All specimens were microCT scanned with a resolution of 20-40 μm. Avizo 9.3® (Visualization Sciences Group, SAS) was used to evaluate the quality of and pre-process the reconstructed scan data (e.g. crop or resample). Segmentation of the image data was performed using the MIA-clustering method [4] and then processed in Medtool 4.2 (Dr. Pahr Ingenieurs.e.U) to obtain 3D meshes of each talus. A template of 11 landmarks, 61 curve semilandmarks and 144 surface semilandmarks was created in Viewbox (dHAL Software) and applied to the 21 tali. The (semi)landmark configuration was superimposed by Generalized Procrustes Analysis, and semilandmarks were allowed to slide against recursive updates of the Procrustes consensus [5]. Finally, a form space Principal Component Analysis was carried out to explore talar shape variation during growth. Data were processed in R 3.4.3 (The R Foundation for Statistical Computing, 2017).
The first three PCs explain 92.9% of the total variation. Most of the morphometric variation is explained by PC1 (89.8%), i.e. ontogenetic allometry, where negative scores account for small, sub-parallelepiped talar morphology (the youngest individuals), while positive scores account for an elongation of the entire body of the talus, due to the development of the neck, and a clear growth of the lateral malleolar facet, while the posterior side of the trochlear facet is not well defined yet. The anterior calcaneal facet is well developed since the youngest phases (negative scores), while the posterior calcaneal facet becomes larger, less triangular, and more concave towards PC1 positive. PC2 (1.7%) and PC3 (1.4%) describe only subtle morphological differences. Negative values of PC2 account for a longer lateral ridge, that shortens along positive values, due to the growth of the talar head, development of the neck, trochlea, and lateral malleolar facet, with a more concave aspect of the lateral side. It is also possible to discern a narrowing of the sulcus tali and a clear medial rotation of the talar head. PC3 negative scores show a more compact shape, that becomes higher along positive values with the development of the posterior calcaneal facet and head.
This study is part of an ongoing project focusing on ontogenetic changes. Here we present preliminary results showing how external talar morphology varies during the early stages of human bipedalism. Future analyses will combine external morphological analyses with an assessment of trabecular bone architecture, thus providing a more holistic vision of these changes during development.
Acknowledgements
This project is funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 724046 - SUCCESS); website: http://www.erc-success.eu/. We are grateful to Dr Mirko Traversari for his willingness on the use of the Roccapelago sample.
References:
[1] Hellier, C.A., & Jeffery, N. 2006. Morphological plasticity in the juvenile talus. Foot and Ankle surgery, 12(3), 139-147.
[2] Belcastro, M.G., Bonfiglioli, B., Pedrosi, M.E., Zuppello, M., Tanganelli, V., & Mariotti, V. 2017. The history and composition of the identified human skeletal collection of the Certosa Cemetery (Bologna, Italy, 19th‐20th century). International Journal of Osteoarchaeology. DOI: 10.1002/oa.2605
[3] Figus, C., Traversari M., Scalise L. M., Oxilia G., Vazzana A., Buti L., Sorrentino R., Gruppioni G., Benazzi, S. 2017. The study of commingled non-adult human remains: Insights from the 16th-18th centuries community of Roccapelago (Italy). Journal of Archaeological Science: Reports, 14:382-391
[4] Dunmore C.J., Wollny G., Skinner M.M. (2018) MIA-Clustering: a novel method for segmentation of paleontological material. PeerJ 6:e4374
[5] Rohlf, F.J., Slice, D. 1990. Extensions of the Procrustes method for the optimal superimposition of landmarks. Syst. Biol. 39, 40-59
Zoonotic potential of Giardia duodenalis and Cryptosporidium spp. and prevalence of intestinal parasites in young dogs from different populations on Prince Edward Island, Canada
No full textThe prevalence of Giardia duodenalis, Cryptosporidium spp. and other intestinal parasites was determined in dogs <1 year old from Prince Edward Island, Canada. Fecal samples were collected from the local animal shelter (n=62), private veterinary clinics (n=78) and a pet store (n=69). Intestinal parasites isolated included G. duodenalis, Cryptosporidium spp., Toxocara canis, Isospora spp. and Uncinaria stenocephala. To estimate the zoonotic risk associated with these infections, genotypes of G. duodenalis and Cryptosporidium spp. were determined using 16S rRNA and Hsp70 gene sequencing, respectively. Dogs from the pet store had the highest prevalence of intestinal parasites (78%, 95% CI: 68-88%), followed by the private veterinary clinics (49%, 95% CI: 37-60%), and the local animal shelter (34%, 95% CI: 22-46%). The majority G. duodenalis belonged to host-adapted assemblages D (47%, 95% CI: 31-64%) and C (26%, 95% CI: 13-43%), respectively. Zoonotic assemblages A and B were isolated alone or in mixed infections from 16% (95% CI: 6-31%) of G. duodenalis-positive dogs. All Cryptosporidium spp. were the host-adapted C. canis. While host-adapted, non-zoonotic G. duodenalis genotypes were more common, the presence of G. duodenalis assemblages A and B, T. canis, and U. stenocephala suggests that these dogs may present a zoonotic risk. The zoonotic risk from Cryptosporidium-infected dogs was minimal.Fabienne D. Uehlinger, Spencer J. Greenwood, J. Trenton McClure, Gary Conboy, Ryan O’Handley, Herman W. Barkem
Singing from the Grave: DNA from a 180 Year Old Type Specimen Confirms the Identity of Chrysoperla carnea (Stephens)
No full textCopyright: © 2015 Price et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. The attached file is the published version of the article.NHM Repositor
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