123 research outputs found
The author file: Stephan Preibisch
No full textStaying mobile and building a Toy-Story-related way to stitch terabyte-sized images in microscopy
sj-jpg-3-jcb-10.1177_0271678X211048412 - Supplemental material for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging
No full textSupplemental material, sj-jpg-3-jcb-10.1177_0271678X211048412 for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging by Jan Kufer, Christine Preibisch, Samira Epp, Jens Göttler, Lena Schmitzer, Claus Zimmer, Fahmeed Hyder and Stephan Kaczmarz in Journal of Cerebral Blood Flow & Metabolism</p
sj-jpg-1-jcb-10.1177_0271678X211048412 - Supplemental material for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging
No full textSupplemental material, sj-jpg-1-jcb-10.1177_0271678X211048412 for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging by Jan Kufer, Christine Preibisch, Samira Epp, Jens Göttler, Lena Schmitzer, Claus Zimmer, Fahmeed Hyder and Stephan Kaczmarz in Journal of Cerebral Blood Flow & Metabolism</p
sj-jpg-5-jcb-10.1177_0271678X211048412 - Supplemental material for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging
No full textSupplemental material, sj-jpg-5-jcb-10.1177_0271678X211048412 for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging by Jan Kufer, Christine Preibisch, Samira Epp, Jens Göttler, Lena Schmitzer, Claus Zimmer, Fahmeed Hyder and Stephan Kaczmarz in Journal of Cerebral Blood Flow & Metabolism</p
sj-jpg-4-jcb-10.1177_0271678X211048412 - Supplemental material for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging
No full textSupplemental material, sj-jpg-4-jcb-10.1177_0271678X211048412 for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging by Jan Kufer, Christine Preibisch, Samira Epp, Jens Göttler, Lena Schmitzer, Claus Zimmer, Fahmeed Hyder and Stephan Kaczmarz in Journal of Cerebral Blood Flow & Metabolism</p
sj-jpg-2-jcb-10.1177_0271678X211048412 - Supplemental material for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging
No full textSupplemental material, sj-jpg-2-jcb-10.1177_0271678X211048412 for Imaging effective oxygen diffusivity in the human brain with multiparametric magnetic resonance imaging by Jan Kufer, Christine Preibisch, Samira Epp, Jens Göttler, Lena Schmitzer, Claus Zimmer, Fahmeed Hyder and Stephan Kaczmarz in Journal of Cerebral Blood Flow & Metabolism</p
Near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse pancreas (jrc_mus-pancreas-4)
No full textSample: Pancreas tissue from a wild-type, postnatal day 7 mouse, strain: C57BL/6J from Jackson LabSample Description: A dataset featuring isotropic 3D electron microscopy data of the mouse pancreas (jrc_mus-pancreas-4). The sample was obtained from a 7-day-old, wild-type C57BL/6 mouse strain sourced from Jackson Laboratory. Mouse anesthesia was performed as IACUC guidelines. Perfusion fixation with glutaraldehyde and vibratome section. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven. The sample was provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia). Post-processing was conducted by Eric Trautman and Stephan Preibisch (HHMI/Janelia).Protocol: Mouse anesthesia was performed as IACUC guidelines. Perfusion fixation with glutaraldehyde and vibratome section. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven.Contributions: Sample provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia) and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).Acquisition ID: jrc_mus-pancreas-4Voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z)Data dimensions (µm): 146.272, 113.04 , 115.048 (X, Y, Z)Imaging start date: 2023-04-18Dataset URL (Redirect): https://data.janelia.org/5MsI5Visualization Website: https://openorganelle.janelia.org/datasets/jrc_mus-pancreas-4Imaging duration (days): 23Landing energy (eV):Imaging current (nA):Scanning speed (MHz): 3</p
Near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney-2)
No full textSample: Wild-type, 8 week old mouse, strain: C57BL/6 from Jackson LabSample Description: A dataset featuring isotropic 3D electron microscopy data of the mouse kidney (jrc_mus-kidney-2). The sample was obtained from an 8-week-old, wild-type C57BL/6 mouse strain sourced from Jackson Laboratory. Mouse euthanasia was performed as IACUC guidelines. Pinch out the sample with the biopsy needle followed by high pressure freezing fixation. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven. The sample was provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia). Post-processing was conducted by Eric Trautman and Stephan Preibisch (HHMI/Janelia). This dataset offers a comprehensive view of a young mouse kidney cellular architecture and facilitates further research in nephrology and beyond.Protocol: Mouse euthanasia was performed as IACUC guidelines. Pinch out the sample with the biopsy needle followed by high pressure freezing fixation. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven.Contributions: Sample provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), with imaging by Wei Qiu (HHMI/Janelia), and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).Acquisition ID: jrc_mus-kidney-2Voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z)Data dimensions (µm): 102.992 x 101.464 x 110.536 (X,Y,Z)Imaging start date: 2022-11-01Dataset URL (Redirect): https://data.janelia.org/X0AtaVisualization Website: https://openorganelle.janelia.org/datasets/jrc_mus-kidney-2Imaging duration (days): 13Landing energy (eV):Imaging current (nA):Scanning speed (MHz):</p
Near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse thymus (jrc_mus-thymus-1)
No full textSample: Thymus tissue from a wild-type, postnatal day 7 mouse, strain: C57BL/6J from Jackson LabSample Description: A dataset featuring isotropic 3D electron microscopy data of the mouse thymus (jrc_mus-thymus-1). The sample was obtained from a wild-type postnatal day 7 C57BL/6 mouse strain sourced from Jackson Laboratory. Mouse anesthesia was performed as IACUC guidelines. Perfusion fixation with glutaraldehyde and vibratome section. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven. The sample was provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia). Post-processing was conducted by Eric Trautman and Stephan Preibisch (HHMI/Janelia). This dataset offers a comprehensive view of a young mouse thymus cellular architecture.Protocol: Mouse anesthesia was performed as IACUC guidelines. Perfusion fixation with glutaraldehyde and vibratome section. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven.Contributions: Sample provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia) and imaged by Wei Qiu (HHMI/Janelia) and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).Acquisition ID: jrc_mus-thymus-1Voxel size (nm): 8 x 8 x 8 (x, y, z)Data dimensions (µm): 147.2 x 116.3 x 116.0 (X, Y, Z)Imaging start date: 2023-06-01Imaging duration (days): 36Scanning speed (MHz): 3Dataset URL (Redirect): https://data.janelia.org/UBuACVisualization Website: https://openorganelle.janelia.org/datasets/jrc_mus-thymus-1Publication: Xu et al., 2017</p
Near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse liver (jrc_mus-liver-3)
No full textSample: Liver tissue from a wild-type, postnatal day 7 mouse, strain: C57BL/6J from Jackson LabSample Description: A dataset featuring isotropic 3D electron microscopy data of the mouse liver (jrc_mus-liver-3). The sample was obtained from a 7-day-old, wild-type C57BL/6 mouse strain sourced from Jackson Laboratory. Mouse anesthesia was performed as IACUC guidelines. Perfusion fixation with glutaraldehyde and vibratome section. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven. The sample was provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia). Post-processing was conducted by Eric Trautman and Stephan Preibisch (HHMI/Janelia). This dataset offers a comprehensive view of a young mouse liver cellular architecture and facilitates further research in hepatology and beyond.Protocol: Mouse anesthesia was performed as IACUC guidelines. Perfusion fixation with glutaraldehyde and vibratome section. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven.Contributions: Sample provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia) and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).Acquisition ID: jrc_mus-liver-3Voxel size (nm): 8 x 8 x 8 (x, y, z)Data dimensions (µm): (X, Y, Z)Imaging start date: 2023-05-02Imaging duration (days): 32Scanning speed (MHz): 3Dataset URL (Redirect): https://data.janelia.org/V4yBPVisualization Website: https://openorganelle.janelia.org/datasets/jrc_mus-liver-3Publication: Xu et al., 2017</p
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