537 research outputs found
Stethopristes Gilbert 1905
No full text<i>Stethopristes</i> Gilbert, 1905 <p>[New standard Japanese name: Kagaribi-matodai-zoku]</p>Published as part of <i>Koeda, Keita, Sado, Tetsuya, Hata, Harutaka & Fujiwara, Yoshihiro, 2024, Redescription and first Japanese seamount record of Stethopristes eos (Zeiformes; Parazenidae), pp. 579-586 in Zootaxa 5399 (5)</i> on page 580, DOI: 10.11646/zootaxa.5399.5.7, <a href="http://zenodo.org/record/10517572">http://zenodo.org/record/10517572</a>
FIG. 15 in A revision of Notophyllum Örsted, 1843 (Phyllodocidae, Polychaeta)
No full textFIG. 15. Notophyllum sagamianum, specimen from Sado Island, Japan. (A) Anterior end, dorsal view. (B) Parapodium, segment 32, anterior view. (C) Same, posterior view.Published as part of Kato, Tetsuya & Pleijel, Fredrik, 2002, A revision of Notophyllum Örsted, 1843 (Phyllodocidae, Polychaeta), pp. 1135-1178 in Journal of Natural History 36 (10) on page 1167, DOI: 10.1080/00222930110039954, http://zenodo.org/record/529844
Three-year follow-up after the great east Japan earthquake in the incidence of out-of-hospital cardiac arrest with cardiac origin
No full textJunya Sado, Kosuke Kiyohara, Taku Iwami, Yuri Kitamura, Emiko Ando, Tetsuya Ohira, Tomotaka Sobue, Tetsuhisa Kitamura, Three-Year Follow-up After the Great East Japan Earthquake in the Incidence of Out-of-Hospital Cardiac Arrest With Cardiac Origin, Circulation Journal, 2018, Volume 82, Issue 3, Pages 919-922, Released February 23, 2018, [Advance publication] Released January 26, 2018, Online ISSN 1347-4820, Print ISSN 1346-9843, https://doi.org/10.1253/circj.CJ-17-1003, https://www.jstage.jst.go.jp/article/circj/82/3/82_CJ-17-1003/_article/-char/enBackground: We assessed whether the occurrence of out-of-hospital cardiac arrest (OHCA) with cardiac origin increased in the disaster areas during the 3-year period after the Great East Japan Earthquake (GEJE). Methods and Results: From the OHCA registry in Japan, yearly changes in occurrence after the GEJE were assessed by applying Poisson regression models. The risk ratio of the first year after the earthquake was significantly greater in both men and women, but the difference disappeared in the second and third years. Conclusions: The GEJE significantly increased the occurrence of OHCA with cardiac origin in the first year after the earthquake
Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)
No full textFigure 4. Ancestral distribution ranges reconstructed parsimoniously using PAUP*. Two representative character state (see legend for Fig. 3) optimizations are shown on the upper (delayed transition) and lower (accelerated transition) rows. Minimum F optimization was the same as delayed transition. The parsimonious reconstruction of character states allows an unrealistic all zero state. It does not give the character state at the root. In such cases the character state was manually optimized (asterisks).Published as part of Saitoh, Kenji, Sado, Tetsuya, Doosey, Michael H., Bart Jr, Henry L., Inoue, Jun G., Nishida, Mutsumi, Mayden, Richard L. & Miya, Masaki, 2011, Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi), pp. 633-662 in Zoological Journal of the Linnean Society 161 (3) on page 651, DOI: 10.1111/j.1096-3642.2010.00651.x, http://zenodo.org/record/575419
FIGURE 1a in Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae)
No full textFIGURE 1a. The phylogenetic relationships of the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae), as represented by the tree topology with the best log likelihood score (ln L = -111857.327) recovered from 100 independent maximum likelihood searches. Bootstrap values are reported at each node (values below 50% are not shown). Relationships are shown for (a) outgroup taxa and (b) subfamily Oxygastrinae.Published as part of <i>Tang, Kevin L., Agnew, Mary K., Hirt, M. Vincent, Lumbantobing, Daniel N., Raley, Morgan E., Sado, Tetsuya, Teoh, View-Hune, Yang, Lei, Bart, Henry L., Harris, Phillip M., He, Shunping, Miya, Masaki, Saitoh, Kenji, Simons, Andrew M., Wood, Robert M. & Mayden, Richard L., 2013, Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae), pp. 101-135 in Zootaxa 3681 (2)</i> on page 110, DOI: 10.11646/zootaxa.3681.2.1, <a href="http://zenodo.org/record/10098437">http://zenodo.org/record/10098437</a>
FIGURE 3 in Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae)
No full textFIGURE 3. The tree topology with the best log likelihood score (ln L = -107719.569) resulting from 100 independent searches of a data matrix with a subset of 122 taxa (of 144); terminals represented solely by sequences obtained from GenBank were removed. Bootstrap values are reported at each node (values below 50% are not shown).Published as part of <i>Tang, Kevin L., Agnew, Mary K., Hirt, M. Vincent, Lumbantobing, Daniel N., Raley, Morgan E., Sado, Tetsuya, Teoh, View-Hune, Yang, Lei, Bart, Henry L., Harris, Phillip M., He, Shunping, Miya, Masaki, Saitoh, Kenji, Simons, Andrew M., Wood, Robert M. & Mayden, Richard L., 2013, Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae), pp. 101-135 in Zootaxa 3681 (2)</i> on page 115, DOI: 10.11646/zootaxa.3681.2.1, <a href="http://zenodo.org/record/10098437">http://zenodo.org/record/10098437</a>
FIGURE 2a in Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae)
No full textFIGURE 2a. The phylogenetic relationships of the subfamily Oxygastrinae, as represented by the strict consensus of six mostparsimonious trees (length = 26366 steps; CI = 0.154; RI = 0.469). Relationships are shown for (a) outgroup taxa and (b) subfamily Oxygastrinae. Bremer (above) and bootstrap (below) support values are displayed at each node (bootstrap values below 50% are not shown).Published as part of <i>Tang, Kevin L., Agnew, Mary K., Hirt, M. Vincent, Lumbantobing, Daniel N., Raley, Morgan E., Sado, Tetsuya, Teoh, View-Hune, Yang, Lei, Bart, Henry L., Harris, Phillip M., He, Shunping, Miya, Masaki, Saitoh, Kenji, Simons, Andrew M., Wood, Robert M. & Mayden, Richard L., 2013, Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae), pp. 101-135 in Zootaxa 3681 (2)</i> on page 113, DOI: 10.11646/zootaxa.3681.2.1, <a href="http://zenodo.org/record/10098437">http://zenodo.org/record/10098437</a>
FIGURE 4 in Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae)
No full textFIGURE 4. The strict consensus of four most-parsimonious trees (length = 25370 steps; CI = 0.159; RI = 0.460) based on a data matrix with a subset of 122 taxa (of 144); terminals represented solely by sequences obtained from GenBank were removed. Bootstrap values are reported at each node (values below 50% are not shown).Published as part of <i>Tang, Kevin L., Agnew, Mary K., Hirt, M. Vincent, Lumbantobing, Daniel N., Raley, Morgan E., Sado, Tetsuya, Teoh, View-Hune, Yang, Lei, Bart, Henry L., Harris, Phillip M., He, Shunping, Miya, Masaki, Saitoh, Kenji, Simons, Andrew M., Wood, Robert M. & Mayden, Richard L., 2013, Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae), pp. 101-135 in Zootaxa 3681 (2)</i> on page 116, DOI: 10.11646/zootaxa.3681.2.1, <a href="http://zenodo.org/record/10098437">http://zenodo.org/record/10098437</a>
Molecular phylogeny of the fishes traditionally referred to Cyprinini sensu stricto (Teleostei: Cypriniformes)
No full textCarps (e.g. Koi) of the genus Cyprinus and Crucian carps (e.g. Goldfish) of the genus Carassius are among the most popular freshwater fishes around the world. However, their phylogenetic positions within the subfamily Cyprininae, relationships with their allies (e.g. Procypris, Carassioides), and the monophyly of the group formed by them and their allies, which is referred as the tribe Cyprinini sensu stricto, are far from clear. Historically, the Cyprinini was defined by different people according to whether a cyprinine fish possessed a spinous anal-fin ray (or anal spine), the spine was serrated or not, and occasionally, the number of branched dorsal-fin rays. Some definitions were established without providing any diagnostic characters. In this study, we investigated the monophyly of the tribe Cyprinini sensu stricto, based on four different historical definitions, and explored the phylogenetic relationships of these members in the subfamily Cyprininae. Using five mitochondrial genes as markers, both maximum-likelihood and Bayesian trees were constructed using the optimal partitioning strategy. Both analyses successfully resolved a monophyletic Cyprininae and recovered seven major clades from this subfamily. The diagnosis limiting the tribe Cyprinini sensu stricto to four genera, Cyprinus, Carassius, Carassioides and Procypris, received most support. We propose that only those cyprinines that possess a serrated anal spine and have no < 10 branched dorsal-fin rays should be considered members of this tribe. Cyprinini is sister to the Sinocyclocheilus clade, a group traditionally considered a barbin, and together they form the 'Cyprinini-Sinocyclocheilus' clade. Procypris forms the basal clade of the Cyprinini, whereas species of Carassius and Carassioides locate at the top
Antimicrobial Property and Mode of Action of the Skin Peptides of the Sado Wrinkled Frog, Glandirana susurra, against Animal and Plant Pathogens
No full textThe Sado wrinkled frog Glandirana susurra has recently been classified as a new frog species endemic to Sado Island, Japan. In this study, we cloned 12 cDNAs encoding the biosynthetic precursors for brevinin-2SSa–2SSd, esculentin-2SSa, ranatuerin-2SSa, brevinin-1SSa–1SSd, granuliberin-SSa, and bradykinin-SSa from the skin of G. susurra. Among these antimicrobial peptides, we focused on brevinin-2SSb, ranatuerin-2SSa, and granuliberin-SSa, using their synthetic replicates to examine their activities against different reference strains of pathogenic microorganisms that infect animals and plants. In broth microdilution assays, brevinin-2SSb displayed antimicrobial activities against animal pathogens Escherichia coli, Salmonella enterica, Pseudomonas aeruginosa, and Candida albicans and plant pathogens Xanthomonas oryzae pv. oryzae, Clavibacter michiganensis subsp. michiganensis, and Pyricularia oryzae. Ranatuerin-2SSa and granuliberin-SSa were active against C. albicans and C. michiganensis subsp. michiganensis, and granuliberin-SSa also was active against the other plant pathogenic microbes. Scanning electron microscopic observations demonstrated that brevinin-2SSb, ranatuerin-2SSa, and granuliberin-SSa induced morphological abnormalities on the cell surface in a wide range of the reference pathogens. To assess the bacterial-endotoxin-binding ability of the peptides, we developed an enzyme-linked endotoxin-binding assay system and demonstrated that brevinin-2SSb and ranatuerin-2SSa both exhibited high affinity to lipopolysaccharide and moderate affinity to lipoteichoic acid
- …
