1,720,977 research outputs found
Molecular and behavioral analysis of sex-linked courtship song variation in a natural population of Drosophila melanogaster
No full textGenes controlling the "lovesong" in Drosophila are particularly interesting under a evolutionary point of view as they could be involved in the reproductive isolation between closely related species and, as a consequence, in the speciation process. We carried out a survey of sex-linked molecular and behavioral courtship song variation in 27 lines derived from a natural population of Drosophila melanogaster in Italy. We sequenced a 983 bp fragment of cacophony(cac), a calcium channel gene controlling aspects of the courtship song. The same region was also sequenced in a D. simulans strain. Only 5 non-coding sites were polymorphic among the D. melanogaster lines, and no amino acid substitutions were found between the two species. Statistical tests applied to the data did not reveal any significant deviations from a neutral model. Using the same lines we also carried out an analysis of three different song parameters which are known to be affected by the cac(S) song mutation: interpulse-interval (IPI), pulse amplitude (PA) and cycles per pulse (CPP). We found significant differences among the lines in IPI and PA, and for the latter a significant association with one of the polymorphic sites of cac
A cline in the Drosophila melanogaster period gene in Australia: neither down nor under
No full textWeeks et al. (2006) have reported their inability to find a cline in the frequencies of the major Thr-Gly encoding length variant alleles of the period gene in Drosophila melanogaster in Eastern Australia. This is in contrast to a study by Sawyer et al. (2006), who found a cline on this continent from samples collected in 1993. Weeks et al. then cast doubt on the validity of a robust cline found for these variants in Europe by Costa et al. (1992), criticizing their molecular techniques and sampling methods. We show how these claims are unjustified, and reveal a number of potential problems in their own methodology. Finally by reanalysing the subset of their data which they state is more reliable, we suggest that their results from Australia may be reasonably consistent with our own
MOLECULAR POLYMORPHISM IN THE PERIOD GENE OF DROSOPHILA-SIMULANS
No full textThe threonine-glycine (Thr-Gly) repeat region of the period (per) gene of eight natural populations of Drosophila simulans from Europe and North Africa was analyzed by polymerase chain reaction, DNA sequencing and heteroduplex formation. Five different length alleles encoding 21, 23, 25 and two different kinds of 24 Thr-Gly pairs in the uninterrupted repeat were found. In the 3' region flanking the repeat 6 nucleotide substitutions (3 synonymous, 3 replacement) were observed in three different combinations that we called haplotypes I, II and III. The complete linkage disequilibrium observed between the haplotypes and these length variants allowed us to infer from the repeat length, the DNA sequence at the 3' polymorphic sites. The haplotypes were homogeneously distributed across Europe and North Africa. The data show statistically significant departures from neutral expectations according to the Tajima test. The results suggest that balancing selection might have played a role in determining the observed levels and patterns of genetic diversity at the per gene in D. simulans
EVOLUTION OF THE THREONINE-GLYCINE REPEAT REGION OF THE PERIOD GENE IN THE MELANOGASTER SPECIES SUBGROUP OF DROSOPHILA
No full textThe Threonine-Glycine (Thr-Gly) region of the period gene (per) in Drosophila was compared in the eight species of the D. melanogaster subgroup. This region can be divided into a diverged variable-length segment which is flanked by more conserved sequences. The number of amino acids encoded in the variable-length region ranges from 40 in D. teissieri to 69 in D. mauritiana. This is similar to the range found within natural populations of D. melanogaster. It was possible to derive a Thr-Gly "allele" of one species from that of another by invoking hypothetical Thr-Gly intermediates. A phylogeny based on the more conserved flanking sequences was produced. The results highlighted some of the problems which are encountered when highly polymorphic genes are used to infer phylogenies of closely related species
Mutational mechanisms, phylogeny, and evolution of a repetitive region within a clock gene of Drosophila melanogaster
No full textThe D. melanogaster clock gene period (per) is an internally repetitive gene encoding a tandem array of Thr-Gly codons that are highly polymorphic in length in European natural populations. The two major length variants, (Thr-Gly)20 and (Thr-Gly)17, show a highly significant latitudinal cline. In this study we present the complete sequence of the Thr-Gly region of 91 individuals from 6 natural populations of D. melanogaster, 5 from Europe and 1 from North Africa. We further characterized these 91 individuals for polymorphic sites in two other regions, one upstream and one downstream of the Thr-Gly repeat. We used the haplotypic combinations of Thr-Gly allele with flanking markers in an attempt to identify the mechanisms involved in the evolution of the D. melanogaster Thr-Gly region and to infer the phylogenetic relationship existing among the Thr-Gly alleles. We observe evidence for both intra- and interallelic mutational mechanisms, including replication slippage, unequal crossing-over, and gene conversion
MOLECULAR EVOLUTION OF A REPETITIVE REGION WITHIN THE PER GENE OF DROSOPHILA
No full textThe clock gene period (per) controls a number of biological rhythms in Drosophila. In D. melanogaster, per has a repetitive region that encodes a number of alternating threonine-glycine residues. We sequenced and compared this region from several different Drosophila species belonging to various groups within the Drosophila and Sophophora subgenera. This part of per shows a great variability in both DNA sequence and length. Furthermore, analysis of the data suggests that changes in the length of this variable region might be associated with amino acid replacements in the more conserved flanking sequences
Clines in clock genes: fine-tuning circadian rhythms to the environment
No full textThe dissection of the circadian clock into its molecular components represents the most striking and well-studied example of a gene regulatory network underlying a complex behavioural trait. By contrast, the evolutionary analysis of the clock has developed more slowly. Here we review studies that have surveyed intraspecific clock gene variation over large geographical areas and have discovered latitudinal clines in gene frequencies. Such spatial patterns traditionally suggest that natural selection shapes genetic variation, but it is equally possible that population history, or a mixture of demography and selection, could contribute to the clines. We discuss how population genetics, together with functional assays, can illuminate these possible cases of natural selection in Drosophila clock genes
LENGTH POLYMORPHISM IN THE THREONINE-GLYCINE-ENCODING REPEAT REGION OF THE PERIOD GENE IN DROSOPHILA
No full textSingle-fly polymerase chain reaction amplification and direct DNA sequencing revealed high levels of length polymorphism in the threonine-glycine encoding repeat region of the period (per) gene in natural populations of Drosophila melanogaster. DNA comparison of two alleles of identical lengths gave a high number of synonymous substitutions suggesting an ancient time of separation. However detailed examination of the sequences of different Thr-Gly length variants indicated that this divergence could be understood in terms of four deletion/insertion events. In Drosophila pseudoobscura a length polymorphism is observed in a five-amino acid degenerate repeat, which corresponds to melanogaster's Thr-Gly domain. In spite of the differences between D. melanogaster and D. pseudoobscura in the amino acid sequence of the repeats, the predicted secondary structures suggest evolutionary and mechanistic constraints on the per protein of these two species
Linkage disequilibrium, mutational analysis and natural selection in the repetitive region of the clock gene, period, in Drosophila melanogaster
No full textWe have used the method of disequilibrium pattern analysis to examine associations between the threonine-glycine (Thr-Gly) encoding repeat region of the clock gene period (per) of Drosophila melanogaster, and polymorphic sites both upstream and downstream of the repeat, in a number of European fly populations. The results are consistent with the view that selection may be operating on various haplotypes which share the Thr-Gly length alleles encoding 17, 20 and 23 dipeptide pairs, and that the repeat itself may be the focus for selection. These conclusions lend support to a number of other population and behavioural investigations which have provided evidence that selection is acting on the Thr-Gly region. The linkage analysis was also used to infer an approximate mutation rate (mu) for the repeat, of 10(-5) < mu < 4 x 10(-5) per gamete per generation. Direct measurements of the mutation rate using the polymerase chain reaction in a pedigree analysis of tens of thousands of individuals do not contradict this value. Consequently, the Thr-Gly repeat does not have a mutation rate that is as high as some of the non-coding minisatellites, but it is several orders of magnitude higher than the nucleotide substitution rate. The implications of this elevated mutation rate for linkage disequilibria and selection are discussed
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