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Analysis programs used for the article Five Cytochrome 'Nanowires' Suffice for Prokaryotes to Breathe Rocks Microns Away
<p>This repository contains the analysis scripts that were developed for the manuscript titled: Five Cytochrome ‘Nanowires’ Suffice for Prokaryotes to Breathe Rocks Microns Away.</p>
<p>The repository comprises four files/directories. </p>
<p>1) CompareExpAndCalcRedoxTitrationAnalysis.py : A python script to generate Figure 2, which compares simulated and measured spectroelectrochemical titration curves.</p>
<p>2) BioDCv2 : Version 2.0 of the BioDC program written by Matthew J. Guberman-Pfeffer.</p>
<p>3) RedoxCooperativityInOmcS.zip : An example of using BioDC to compute redox cooperativities. The data is in Figure 5 of the manuscript.</p>
<p>4) ComputeDiffusionConstantForAllPermutationsOfDeltaG.zip : A package of Python scripts that computes the diffusion constant for all possible sequences of a set of redox potentials. The resulting data is discussed in the manuscript.</p>
<p> </p>
Gymnogonos antarcticus Pfeffer 1889
Gymnogonos antarcticus (Pfeffer, 1889) species inquirenda Synonyms in the area: Corymorpha antarctica Pfeffer, 1889; Blanco 1994a [polyp]. Remarks: see Stepanjants & Svoboda (2008) for more considerations concerning the taxonomic status of the species. Distribution in South America: polyp—Atlantic Ocean, at South Georgia Island (Pfeffer 1889; Blanco 1994a).Published as part of M. P. Oliveira 1,16, S P. Miranda 2, *,, Es W. Mianzan 10,, Ro E. Migotto 11,, Ne B. Nascimento 2,11, Eli Nogueira Júnior 12,, Er Quiñones 13,, Izio Scarabino 14,, Tín Schiariti 10,, Io N. Stampar 15,, Tronolone 2, , Quíria B. & Onio C. Marques 2,11, 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 33, DOI: 10.11646/zootaxa.4194.1.
Symplectoscyphus interruptus Pfeffer 1889
Symplectoscyphus interruptus (Pfeffer, 1889) Synonyms in the area: Sertularia interrupta —Pfeffer 1889 [polyp]; Sertularella modesta Hartlaub, 1900, 1905 [polyp]; Sertularella interrupta —Jäderholm 1910 [polyp]; Symplectoscyphus modestus —Genzano & Zamponi 1997 [polyp]. Distribution in South America: polyp—Pacific Ocean, Chile, at 53.78°S 70.97°W (Galea & Schories 2012a p. 50–51); Atlantic Ocean, Argentina, at ca. 54.80°S in Ushuaia (Hartlaub 1900, 1905; Genzano & Zamponi 1997), at South Georgia Island (Pfeffer 1889; Jäderholm 1910; Blanco 1994a). Habitat: polyp—from intertidal to 20m depth (Pfeffer 1889; Hartlaub 1905; Jäderholm 1910; Blanco 1994a; Galea & Schories 2012a p. 50–51).Published as part of M. P. Oliveira 1,16, S P. Miranda 2, *,, Es W. Mianzan 10,, Ro E. Migotto 11,, Ne B. Nascimento 2,11, Eli Nogueira Júnior 12,, Er Quiñones 13,, Izio Scarabino 14,, Tín Schiariti 10,, Io N. Stampar 15,, Tronolone 2, , Quíria B. & Onio C. Marques 2,11, 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 136, DOI: 10.11646/zootaxa.4194.1.
Bobrinsky, N.A. ; Kouznetzov, B.A. et Kouziakin, A. P. — Oprédiélitiel mlékopi-taiuschtchikh S.S.S.R. Prosvieshtchénié, Moscou, 1965
Pfeffer Pierre. Bobrinsky, N.A. ; Kouznetzov, B.A. et Kouziakin, A. P. — Oprédiélitiel mlékopi-taiuschtchikh S.S.S.R. Prosvieshtchénié, Moscou, 1965. In: La Terre et La Vie, Revue d'Histoire naturelle, tome 20, n°1, 1966. p. 106
Heptner, V.G. et Naumov, N. P. — Les Mammifères de l’Union Soviétique. Volume 2, 1re Partie. Siréniens et Carnivores. Moscou, Vysshaya Shkola, 1967
Pfeffer Pierre. Heptner, V.G. et Naumov, N. P. — Les Mammifères de l’Union Soviétique. Volume 2, 1re Partie. Siréniens et Carnivores. Moscou, Vysshaya Shkola, 1967. In: La Terre et La Vie, Revue d'Histoire naturelle, tome 22, n°2, 1968. p. 226
Arnaud, P., Arnaud, F. et Hureau, J.C. — Bibliographie générale de Biologie antarctique et subantarctique (Cétacés exceptés). Paris, Comité Français de Recherches Antarctiques, Publication 18, 1967
Pfeffer Pierre. Arnaud, P., Arnaud, F. et Hureau, J.C. — Bibliographie générale de Biologie antarctique et subantarctique (Cétacés exceptés). Paris, Comité Français de Recherches Antarctiques, Publication 18, 1967. In: La Terre et La Vie, Revue d'Histoire naturelle, tome 21, n°4, 1967. p. 475
Haliclystus antarcticus Pfeffer 1889
Haliclystus antarcticus Pfeffer, 1889 Synonyms in the area: Haliclystus auricula —Kramp 1952; Amor 1962; Quezada 1969b; Mianzan 1989a; Zagal 2004a, 2004b, 2008 [non Haliclystus auricula Clark, 1863]. Remarks: Miranda et al. (2009) redescribed the species and proposed that the specimens identified as Haliclystus auricula Clark, 1863 in Chile (Kramp 1952; Quezada 1969b; Zagal 2004a, 2004b, 2008) and Argentina (Amor 1962; Mianzan 1989a) should be classified as Haliclystus antarcticus (Pfeffer, 1889). Miranda et al. (2010) used molecular data to propose the life cycle of the species. Distribution in South America: Pacific Ocean, southern Chile, at 37.03°S 73.55°W, at 39.78°S 73.34°W, at 52.65°S 71.45°W (Kramp 1952; Quezada 1969b; Zagal 2004a, 2004b; Miranda et al. 2009); Atlantic Ocean, Argentina, at 42.76°S 65.03°W, at 47.75°S 65.91°W, and at South Georgia Island (Pfeffer 1889; Thiel 1928; Carlgren 1930; Kramp 1961; Amor 1962; Mianzan 1989a; Davenport 1998; Miranda et al. 2009, 2010). Habitat: coastal, found in tide pools on rock and on algae (Kramp 1952; Amor 1962; Quezada 1969b; Mianzan 1989a; Zagal 2004a, 2004b; Miranda et al. 2009).Published as part of M. P. Oliveira 1,16, S P. Miranda 2, *,, Es W. Mianzan 10,, Ro E. Migotto 11,, Ne B. Nascimento 2,11, Eli Nogueira Júnior 12,, Er Quiñones 13,, Izio Scarabino 14,, Tín Schiariti 10,, Io N. Stampar 15,, Tronolone 2, , Quíria B. & Onio C. Marques 2,11, 2016, Census of Cnidaria (Medusozoa) and Ctenophora from South American marine waters, pp. 1-256 in Zootaxa 4194 (1) on page 211, DOI: 10.11646/zootaxa.4194.1.
Pfeffer, P. — Asia. A Natural History. New York, Random House, 1968
Bourlière François. Pfeffer, P. — Asia. A Natural History. New York, Random House, 1968. In: La Terre et La Vie, Revue d'Histoire naturelle, tome 23, n°2, 1969. p. 221
Afrikanischer Pfeffer, von den Negern sehr geliebt
Louise von PanhuysNachlassnummer: P 30. - Nicht dat.Ausstellungskatalog 'Reise nach Surinam': Afrikanischer Pfeffer, sehr geliebt von den NegernAuf dem Passepartout: gezeichnet von L. von Panhuys B.W
Pfeffer, P. — Vie et Mort d’un Géant. L’Eléphant d’Afrique. Flammarion, Paris, Collection « L’Odyssée », 192 pages
Bourlière F. Pfeffer, P. — Vie et Mort d’un Géant. L’Eléphant d’Afrique. Flammarion, Paris, Collection « L’Odyssée », 192 pages. In: Revue d'Écologie (La Terre et La Vie), tome 44, n°4, 1989. pp. 406-407
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