1,720,972 research outputs found
openplantpathology/Reproducibility_in_Plant_Pathology: Phytopathology 0.0.8
No full textEdited text to reflect simplified/improved analysis and reviewers' comments and correction
openplantpathology/hagis: v3.1.6
No full texthagis 3.1.6
Bug fixes
Fixes bug where .create_summary_isolate(), an internal function, was exported.
It should not be user-facing and is now no longer exported or documented.
Minor changes
Improved documentation formatting.
Improved handling of internal global variables.
Further updates to test infrastructure.
Update CITATION to follow CRAN's desired format
openplantpathology/hagis: hagis 3.1.3
No full textMinor changes
Sample names in calculate_diversities() are not required to be numeric values.
Previously, this column was converted to numeric so if character values were present, these values became NA.
This allows for greater flexibility when analysing the data as sample names are often more descriptive than just a numerical value.
Spelling corrections in code comments
Clean up CITATION file
README is now more complete with information and links to the MPMI pape
openplantpathology/hagis v3.1.1
No full texthagis 3.1.1
Minor Changes
Use ape, vegan, dplyr and vidiffr packages conditionally
Remove covr from Suggests
Better documentation formattin
openplantpathology/hagis 3.1.0
No full texthagis 3.1.0
Major Changes
Add new function, create_binary_matrix() to format data for exporting beta diversity matrices representing the pathotype of each isolate.
Users can export a binary pathotype data matrix which could then be used to visualize beta-diversity of pathotypes using vegan or ape in R
Add new vignette, "Beta-diversity Analyses", to illustrate the use of the new functionalit
openplantpathology/Reproducibility_in_Plant_Pathology: v0.0.7
No full textResponse to review
Includes:
New analysis methods that drop the reproducibility score and instead analyse only data and code availability
Edited text to reflect simplified/improved analysis and reviewers' comments and correction
openplantpathology/hagis v2.0
No full text<p>This is the first official release on CRAN, v2.0, of the <code>hagis</code> package, which converted the Rmd files that @AGmccoy and @noelzach wrote to perform the pathotype analysis.</p>
openplantpathology/Modelling_Nematode_Populations v0.0.1
No full text<p>First release, ready for review</p>
openplantpathology/Reproducibility_in_Plant_Pathology: Pre-print v0.0.3
No full textCorrects Emerson's name by adding his middle initial to preprin
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