12 research outputs found
redi: v0.14.1
No full text<p>2015-04-23 v0.14.1</p>
<ul>
<li><p>Summary: PreProc and PostProc Hooks! RED-I has added the ability to hook scripts for post processing and preprocessing along with other minor fixes. These features now allow for the writing of filters and the emailing of log messages, for example, at the begining and end of a RED-I run.</p></li>
<li><p>removed project-specific code from preproc.py (Nicholas Rejack)</p></li>
<li>removing project-specific preprocessing test file (Nicholas Rejack)</li>
<li>removed line from settings.ini. REDI-I runs out of the box without any preprocessors required (Nich</li>
<li>removing test-scenarios bash script (Nicholas Rejack)</li>
<li>removed scenario data files. These were for project-specific testing. (Nicholas Rejack)</li>
<li>removed non-informative comments in redi.py (Nicholas Rejack)</li>
<li>removed renamed config dir (Nicholas Rejack)</li>
<li>renaming config to previous config-example (Nicholas Rejack)</li>
<li>added scenario 9 to test scenarios. (Nicholas Rejack)</li>
<li>added scenario 7. bash script now shows test number. (Nicholas Rejack)</li>
<li>added scenario 6 (Nicholas Rejack)</li>
<li>updated test-scenarios with scenario 6 : (Nicholas Rejack)</li>
<li>Add Scenario 9 (Taeber Rapczak)</li>
<li>Correct the date of a result in Scenario 5 (Taeber Rapczak)</li>
<li>Add Scenario 6 (Taeber Rapczak)</li>
<li>Add 5 test scenarios and test-scenarios.bash (Taeber Rapczak)</li>
<li>Do not filter rows without a known "panel" (Taeber Rapczak)</li>
<li>Correct spelling error (Ruchi Vivek Desai)</li>
<li>Fix order of expected output in test_fetch_panels (Taeber Rapczak)</li>
<li>Fix the numbering (Ruchi Vivek Desai)</li>
<li>Add missing tags (Ruchi Vivek Desai)</li>
<li>Replace hard-coded fetch_panels() (Taeber Rapczak)</li>
<li>Renumber the steps (Ruchi Vivek Desai)</li>
<li>Fix indentation briken by commit id b8431f26ec459daf1cc1efe9ebf7c4583dacc572 (Ruchi Vivek Desai)</li>
<li>Fix indentation of Windows installation instructions (Ruchi Vivek Desai)</li>
<li>Add instructions for installing RED-I on Windows (Ruchi Vivek Desai)</li>
<li>Fix email address (Ruchi Vivek Desai)</li>
<li>Minor code cleanup (Taeber Rapczak)</li>
<li>Add more context for preprocessors to use (Taeber Rapczak)</li>
<li>Implement filter_old_labs() (Taeber Rapczak)</li>
<li>Implement filter_old_labs() (Taeber Rapczak)</li>
<li>Implement group_rows_by_panel (Taeber Rapczak)</li>
<li>fetch_consent_dates function now implemented and working. (Nicholas Rejack)</li>
<li>Resolve preproc import issue (Taeber Rapczak)</li>
<li>updated preproc.py. Only fails on NotImplementedError now. (Nicholas Rejack)</li>
<li>updated preproc.py to fix variable names when fetching consent date. (Nicholas Rejack)</li>
</ul>
redi: 0.15.1
No full text<ul>
<li><p>Summary: RED-I now accepts a file as input from the command line, using -f FILENAME.</p></li>
<li><p>add tests to validate the input file used with the commandline switch -f or --file (Christopher Barnes)</p></li>
<li>move logger setup and config to start sooner since it is needed by other functions (Christopher Barnes)</li>
<li>add testdata.csv to use as test input for commandline options test and development (Christopher Barnes)</li>
<li>added .coverage, cover/, coverage.xml and nosettest.xml to .gitignore. The are local to my test runs (Christopher Barnes)</li>
<li>add TODO items (Christopher Barnes)</li>
<li>add todo item for adding a switch to allow another sorting behavior for data points and events (Christopher Barnes)</li>
<li>Fixing broken test. (Nicholas Rejack)</li>
<li>added raw text file to def _run and function signature (Kevin Steven Hanson)</li>
<li>moved raw txt exception out of run function (Kevin Steven Hanson)</li>
<li>adding option to bypass raw.txt with an if else block that makes more sense than my previous one (Kevin Steven Hanson)</li>
<li>Fixing bad operator. (Nicholas Rejack)</li>
<li>Adding code to catch if user tries to use -e and -f at same time (Nicholas Rejack)</li>
<li>added ability to use input file and bypass hard coded raw.txt (Kevin Steven Hanson)</li>
<li>i called logger in my agruement before it was defined, my bad (Kevin Steven Hanson)</li>
<li>adding info statement to work with logger for -f argument (Kevin Steven Hanson)</li>
<li>Added the missing usage for the file input. (Buck72)</li>
<li>Add the flag for input file for REDI to use. (Buck72)</li>
<li>created input file path to hanlde -f file handle with a basic print statement for now (Kevin Steven Hanson)</li>
<li>add .eggs as correction for directory name to .gitignore (Christopher Barnes)</li>
<li>add .egg and virtualenvironment folder venv from instructions to .gitignore (Christopher Barnes)</li>
<li>Adding a new exception to watch for in redcapClient.py: ConnectionError (Nicholas Rejack)</li>
</ul>
Publication Data Enrichment at the University of Florida with the Web of Science
No full textThis talk will focus on a publications data enrichment project at the University of Florida. We will describe how the team has utilized web services from the Web of Science™ to automate processes and to add unique identifiers to existing publications. We will also explain modifications to VIVO’s core queries and templates that allow for adding important contextual links to VIVO, which enhance browsing and discovery. Data processing code, methods and lessons learned will be shared with attendees
research-subject-mapper 0.9.0
No full textTools to generate patient-to-research subject mapping files based on inputs from REDCap project
research-subject-mapper 0.10.2
No full textTools to generate patient-to-research subject mapping files based on inputs from REDCap project
v0.11.0
No full text<p>2014-08-25 v0.11.0</p>
<ul>
<li>Introduced Data Directories (see documentation for --datadir)</li>
<li>Resumable RED-I (see documentation for --resume)</li>
<li>Serialize Collection Date Summary</li>
<li>Included Debian 7.4 installation script (see scripts/install_deb_7_4.sh)</li>
<li>Updated settings: removed emr_log_file since it wasn't used</li>
<li>Removed dependency on Python3 (converted csv2xml.py)</li>
<li>Significantly sped up the data pre-processing step when getting EMR data.</li>
<li>Changed behavior of combining --emrdata and --dryrun; <strong>will</strong> get EMR data.</li>
<li>BUG: Fixed SQLite issue</li>
<li>BUG: event count 15 exceeds maximum of 74</li>
<li>BUG: Closed hanging SFTP connection in GetEmrData.py</li>
<li>Other minor bug fixes</li>
<li>Updated documentation and example configuration</li>
<li>Cleaned up comments in code</li>
<li>DEV: Added coverage and lint goals to Makefile</li>
<li>DEV: Added the generated files to the list of files to remove by make clean
</li>
</ul>
ctsit/redi-dropper-client: Edit User, Delete Files, Dashboard Enhancements
No full textredi-dropper-clien
research-subject-mapper 0.10.7
No full textTools to generate patient-to-research subject mapping files based on inputs from REDCap project
PCORowl
No full text<p>This is an applied ontology contains an OBO Foundry compliant representation of the DEMOGRAPHICS Table of the PCORnet CDM 3.1.</p>This work was fully supported through a PatientCentered Outcomes Research Institute (PCORI) Program Award (CDRN-1501-26692). The content is solely those of the ontology creators and do not necessarily represent the views of PCORI, its Board of Governors or Methodology Committee
